BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58110.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495916 jgi|Araly1|495916|fgenesh2_kg.8__1732__AT5G58110.1 1170 0.0
> Ahg495916 jgi|Araly1|495916|fgenesh2_kg.8__1732__AT5G58110.1
Length=811
Score = 1170 bits (633), Expect = 0.0
Identities = 777/840 (93%), Gaps = 35/840 (4%)
Strand=Plus/Plus
Query 37 GAGACATCGGAGGAACCCTAAATTGAATgagaagaggagagtgagacgggagaga-a-ag 94
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1 GAGACATCGGAGGAACCCTAAATTGAATGAGAAGAGGAGAGTGAG--GGGAGAGACAGAG 58
Query 95 ccagagcgagcgatagagcaaagacatggagagagaggaggagaagacgaaagagGGCTC 154
|||| ||| || ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 59 AGAGAGAGAGAGAGAGAGCAAAGTCATGGAGAGAGAGGAGGAGAAGAAGAAAGAGGGCTC 118
Query 155 ATCGTATAGGTACTGGGTGAGAGAAGCCACCTCAGACGCAGCTCCTCCTCCTCTGCCCCA 214
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 ATCGTATAGATACTGGGTGAGAGAAGCCACCTCAGACGCAGCTCCTCCTCCTCTGCCACA 178
Query 215 AAAGCTCAGCAACAACGACGTCTCTCTCAATACTGCTCCTGCGTCCCTTGGCTCTCTCTG 274
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 179 GAAGCTCAGCAACAACGACGTCGCTCTCAATGCTGCTCCTGCGTCCCTTGGCTCTCTCTG 238
Query 275 GAATCGGGCTGGCACTTGGGAGGAGAAGAGTCTCACCAAATGGGCTACTGACCGATTAAA 334
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 239 GAATCGGGCTGGCACTTGGGAGGAGAAAAGTCTAACCAAATGGGCCACTGACCGATTAAA 298
Query 335 GGAGCTGTTGGGATCAGTGGGTTCATTGCAGTTCTCTTCTGGAAAAGCTGAGATTATAGA 394
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 GGAGCTGTTGGGATCAGTGGGTTCATTGCAATTCTCTTCTGGAAAAGCTGAGATTATAGA 358
Query 395 TGTTAACAGATGTGTTGGAGATGCTTTCTTAGTCACAGTTCGGAACAAGAAAAGAGTTGG 454
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTTAACAGATGCGTTGGAGATGCTTTCTTAGTCACAGTTCGGAACAAGAAAAGAGTTGG 418
Query 455 CTATACTTACGAGCTTTCCCTTAAAGTTGAGGGAGAGTGGTCATTTGAAGAGAATATGAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTATACTTACGAGCTTTCCCTTAAAGTTGAGGGAGAGTGGTCATTTGAAGAGAATATGAA 478
Query 515 GAAGGTGAAGGGGAGCCTCGAGATTCCAGAGTTTTCATTCGGCGAGCTTGATGATCTTGA 574
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 GAAGGTCAAGGGGAGCCTCGAGATTCCAGAGTTCTCATTCGGCGAGCTTGATGATCTTGA 538
Query 575 GGTGGATGTGAAGCTCAGCGAAGACAAGGAGCTTTCCCAGCAGCTGAAGCAGCGGATTAA 634
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GGTGGATGTGAAGCTCAGTGAAGACAAGGATCTTTCCCAGCAGCTGAAGCAGCGGATTAG 598
Query 635 GTTGGATATGAAGCAGTTCTTGGAGCCTATACGCCTCAAACTCGGCCTGTTCGAACAGGA 694
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 599 GTTGGATATGAAGCAGTTCTTGGAGCCTATACGCCTCAAACTCGGCCAGTTTGAACAGGA 658
Query 695 ACTCAAAGATAGATAAGGATTTGTTCCCTATATTTTTCCAATTTCAGCCATTTTCAGTTA 754
||||||||||||||| || | || | | | ||||||||||||||
Sbjct 659 ACTCAAAGATAGATA-GG----G------AT-T----C-A------GCCATTTTCAGTTA 695
Query 755 GCAGTAACAAGAACTTCGTAAAACATTGCATCTTACGCTTTTCTGTATCCA--TGCTTGT 812
| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 696 G---TAACAAGAACTTGGTAAAACATTGCATCTTACGCTTTTCTGTATCCACATGCTTGT 752
Query 813 TGACTGTCAAAGTTC-AGTTGATCAATCAGATTTT-ATCTAATGAGATATACTTTTATAG 870
||||||||||||||| | || |||||||||||||| ||||||||||| || |||||||||
Sbjct 753 TGACTGTCAAAGTTCTA-TTCATCAATCAGATTTTTATCTAATGAGAAATCCTTTTATAG 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5