BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58130.1
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495917 jgi|Araly1|495917|fgenesh2_kg.8__1733__AT5G58130.1 2885 0.0
> Ahg495917 jgi|Araly1|495917|fgenesh2_kg.8__1733__AT5G58130.1
Length=2269
Score = 2885 bits (1562), Expect = 0.0
Identities = 2110/2355 (90%), Gaps = 115/2355 (5%)
Strand=Plus/Plus
Query 3 AAAACTGAATCCAACTGAAGCAAGCAGCAATGGAGG-AAAAA--AGCAGCGGCGGCGGCG 59
|||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 AAAACTGAATCCAACT---G-AAGCAGCAATGGAGGAAAAAAGCAGCAGCGGCGGCGGCG 56
Query 60 TTAGGCTTCACGTCGGCGGATTAGGAGAAAGCGTCGGGAGAGATGATCTTCTCAAGATAT 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 57 TTAGGCTTCACGTCGGCGGATTGGGAGAAAGCGTCGGGAGAGATGATCTTCTCAAGATCT 116
Query 120 TCTCTCCGATGGGTACCGTCGATGCCGTCGAATTCGTCAGGACCAAAGGTCGTTCCTTTG 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTTCTCCGATGGGTACCGTCGATGCCGTCGAATTCGTCAGGACCAAAGGTCGTTCCTTTG 176
Query 180 CCTACATCGATTTCTCTCCATCTTCCACCAATTCACTCACCAAGCTCTTCTCTACATATA 239
|||||||||| |||||||| || || |||||||| ||||||||||||||||| || ||||
Sbjct 177 CCTACATCGACTTCTCTCCCTCCTCTACCAATTCCCTCACCAAGCTCTTCTCCACGTATA 236
Query 240 ATGGATGTGTCTGGAAAGGAGGGAGGCTGA-GACTGGAGAAAGCAAAAGAGCATTATCTA 298
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 237 ATGGATGTGTGTGGAAAGGAGGGAGGCT-ACGACTGGAGAAAGCAAAAGAGCATTATCTG 295
Query 299 GCTCGCTTAAAGCGAGAGTGGGAGGCAGCGTCTTCTACCTCTGATAACACCATTAAAGCT 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GCTCGCTTGAAGCGAGAGTGGGAGGCAGCGTCTTCTACCTCTGATAACACCATTAAAGCT 355
Query 359 CCCTCCGATTCACCACCTGCCACTCACCTTAACATCTTCTTTCCCAGACTCAGAAAGGTG 418
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 CCCTCCGATTCAACACCTTCCACCCACCTTAACATCTTCTTTCCCAGACTCAGAAAGGTG 415
Query 419 AAACCTATGCCACTTAGTGGAACTGGTAAACATAAGTATAGCTTTCAGCGTGTTCCAGTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 AAACCTATGCCACTTAGTGGAACTGGTAAACATAAGTATAGCTTTCAGCGTGTTCCACTG 475
Query 479 TCGTCTTCTCTTCCAAGGAGCTTTTGTGATTGTGAAGAGCACTCTAACAGCTCTCTCACT 538
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TCGTCTTCTCTTCCAAAGAGCTTTTGTGATTGTGAAGAGCACTCTAACAACTCTCTCACT 535
Query 539 CCTCGGGAAATACATCTTCATGATCTGGAAGCGGTTAATGTGGGAAGACAA-GAAGCCGA 597
|||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |||
Sbjct 536 CCTCGGGAAACACATCTTCATGATCTGGAAGCGCTTAATGTGGGAAGA-AATGAAGACGA 594
Query 598 GGTGAATGTTATGAACTCGGTGATGAATAAGCTCTTTGAGAAAAAC-A-ATGT-GGA-CC 653
||||||||||||||| |||||||||||||||||||||||||||||| | || | | |
Sbjct 595 GGTGAATGTTATGAATTCGGTGATGAATAAGCTCTTTGAGAAAAACAACAT-TCCAATCA 653
Query 654 CCGAAGAAGACAATGAGATTGAAGCAGACCAAGATAACCTCATCATCAATGTGGCATCTA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CCGAAGAAGACAATGAGATTGAAGCAGACCAAGATAACCTCATCATCAATGTGGCATCTA 713
Query 714 GTGGCAATGATATGGACTCAGCGCTGGATATGTTGTCTAGAAAACGGAAATCAATTCTCA 773
|||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 714 GTGGGAACGATATGGACTCAGAGCTGGATAAGTTGTCTAGAAAACGGAAATCAATTCTCA 773
Query 774 ACaaaaaaaCACCAAGTGAAGAAGGATATAGTGAAGGACGAAAAGGGAACCTTACTCATC 833
|| ||| | ||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 774 ACGAAACAGCACCAAGTGGAGAAGGATATAGTGAAGGACGAAAAGGGAACCACATTCATC 833
Query 834 CAAGCAAGAATAGGCAAACAATCAGCCTAGAGGAAACTGGAAGACAGGAATCTTCACAGG 893
|||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 834 CAAGTAAGAAAAGGCAAACAATCAGCCTAGAGGAAAGTGGGAGACAGGAATCTTTACAGG 893
Query 894 CCATACGTGGAAAGAAGAAGCCTTCTGAAGTGGTACCAGATAAATCATCGGATGAACCGA 953
||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||
Sbjct 894 CCATACGTGAAAAGAAGAAGCCTTCTAAAGTGGTACCGGATAAATCATTGGATGAACCGA 953
Query 954 GCAGAACAAAAGATC-TTGAGCAGTCAATCGACAATATTTCCTGGTCCCAAAAGTCTTCC 1012
||||||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 954 GCAGAACAACAGA-CGTCAAGCAGTCGATCGACAATATTTCCTGGTCCCAAAAGTCTTCC 1012
Query 1013 TGGAAATCACTTATGGCAAATGGGAACAGCAATGATTTTAGTGTATCCAGTTTCTTGCCA 1072
||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1013 TGGAAATCACTAATGGCCAATGGAAACAGCAGTGATTTTAGTGTATCCAGTTTCTTGCCA 1072
Query 1073 GGTGTTGGCTCCAGTAAAGCAGTACAACCTGCACCACGCAACACTGATCTTGCTGGGCTT 1132
||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1073 GGTGTTGGCTCAAGTAAAGCAGTACAACCTGCACCACGCAACGCTGATCTTGCTGAGCTT 1132
Query 1133 CCTAGCCGAGAAAATTTGAA-GAAGAAGACGAAAAGAAAGCGTGTAACGTCTACAATCAT 1191
| |||||||||||||| ||| ||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1133 CGTAGCCGAGAAAATTCGAAGGAA-AAGACGAAAAGAAAGCGCGTAACTTCTACGATCAT 1191
Query 1192 GGCAGAGGATTTACCTGTATCAGATGACATAAAGAGGGATGATAGTGACACAATGGCAGA 1251
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 1192 GGCAGGGGATTTACCTGTGCCAGATGACATAAAGAGGGATGATAGTGACACTATGGTAGA 1251
Query 1252 TGACATAGAGAGGGATGATAGTGATGCTGTGGAATATTACACAGCTTGTGAATCTATGGC 1311
|||||| ||| || | | || ||| || | || || || |||
Sbjct 1252 TGACAT--AGA--GA-G---G-GA---TGT----TAGT-----GC---TG---CTGTGGA 1284
Query 1312 AGATGACACAGCTAGTGACTCTGTGGCTGAGAGGGATGATAGTGATGCTGTGGAAGATGA 1371
||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 1285 AGATGACGCAGCTAGTGACTCTATGGCTGAGAGCGATGATAGTGATGCTGTGGAATATGA 1344
Query 1372 CACAGCTATTGACTCTATGGCAGATGACCCAGCTAGTGACTCTGTGGCTGAGAGTGATG- 1430
||||||||||||||||||||| |||||| |||||||||||||| |||| ||| |||||
Sbjct 1345 CACAGCTATTGACTCTATGGCTGATGACACAGCTAGTGACTCTATGGC--AGA-TGATGC 1401
Query 1431 A--TGGGGATGCTGTGGAAAATGACACTGCTATTGACTCTATGGCCGATGACACAGTTAG 1488
| | | || ||||||| ||| | || | ||| || | |||| | | | |
Sbjct 1402 AGCTAGTGACGCTGTGG---CTGAGA--GCGA-TGA---TA--G-TGATG---CTG-T-G 1444
Query 1489 TAACTCTATGGCTGAGAGCGATGATGGTGA-TAATGTGGAAGATGACACAGCTATTGACT 1547
|| |||| | | ||| | || ||| | | ||| |||||||||||||| |||||
Sbjct 1445 GAA---TATGAC--ACAGC--T-AT--TGACT-CTATGGCAGATGACACAGCTAGTGACT 1493
Query 1548 CTATGTGC-GATGACACAGCTAATGACGATGTAGGTTCAGACGACTCAGGA-TCACTTGC 1605
|| || || ||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 1494 CTGTG-GCAGATGACACAGCAAATGACGATGTAGGTTCAGACGACTCA-GAGTCACTTGC 1551
Query 1606 AGATACTGTTAGTGACACAAGTGTTGAAGCTGTCCCCCTGGAATTTGTTGCAAACACAGA 1665
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1552 AGATACTGTTATTGACACAAGTGTTGACGCTGTACCCCTGGAATTTGTTGCAAACACCGA 1611
Query 1666 GGGCGATAGTGTGG-ACGGCAAGTCGAATGTGGAGAA-GCATGAAAATGTAGCAGAGGAT 1723
||||||||||| || ||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 1612 GGGCGATAGTG-GGAACGGCAAGTCGAATGTGGA-AACGCATGAAAATGGAGTAGAGGAT 1669
Query 1724 TTGAATGCAGAAAAGGAAAGCTTAGTCGTGAAGGAAAATGTTGTAGATGAAGAAGAGGC- 1782
||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1670 ATGAATGCGGAAAAGGAAAGCTTAGTTGTGAAGGAAAATGTTGTAGACGAAGAACAGGCA 1729
Query 1783 GGGTAAAGGACCGCTGAAAGCTAGTAACAAGTCAACAGGAGGTTCTTCATGGCTTCAGAA 1842
||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1730 GGG-AAAGGACCGGTGAAAGCTTGTAACAAGTCAACAGGAGGTTCTTCATGGCTTCAGAA 1788
Query 1843 GGCTTCGTGGACTCAGCTGGTTAGCGACAAAAATACTTCTTCATTCAGTATAACTCAACT 1902
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GGCTTCATGGACTCAGCTGGTTAGCGACAAAAATACTTCTTCATTCAGTATAACTCAACT 1848
Query 1903 CTTCCCAGATTTAACTTCAGACAAGGGCGAAGCAGCTGGAGTGATCAACAATGTAGGAAA 1962
|||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||| ||
Sbjct 1849 CTTCCCAGATTTAAGTTCTGACAAGGGCGAACCAGCTGGAGTGATCAACAGTGTAG-AAC 1907
Query 1963 -CCAGTTCTCCAACTCTAACCAGACTGCAAGTGCAATGAAACAAACAGATTACGCATCTA 2021
||||| ||| | | || |||||||||||||||||| |||||||||||| ||| ||
Sbjct 1908 GCCAGT-CTC-A-C---AA---GACTGCAAGTGCAATGAAGCAAACAGATTACACATGTA 1958
Query 2022 GCAGCGGTGGTTTTGTGGCTGCGGGAGTCCCTGTG-GATAGTACCCCTGTGAGAAGTTTA 2080
|||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1959 GCAGTGGTGGTTTCGTGGCTGCGGGAGTCCCTGTGTG-TAGTACCCCTGTGAGAAGTTTA 2017
Query 2081 GATGAGAATCGGCAGCGTCTGAATGGTAAGAATGTGAGTGAAGGAGCTAAATTGGGTGCG 2140
|||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 2018 GATGAGAATCGGCAGCGTCTTAATGGTAAGAATTTGAGTGAAGGAGCTAGATTGGGTGCG 2077
Query 2141 AAGAAGAAGATAATTAAGAGAAAGGTTGGGTCGGGGGATACTTGCACATTTATGAGAAGC 2200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 AAGAAGA---TAATTAAGAGAAAGGTTGGGTCGGGGGATACTTGCACATTTATGAGAAGC 2134
Query 2201 TCGACTTCTTTGAAAGAGTGGGCAAAGGCTAAGAAGGCATTGAGTGAGCCCAGGAGAAAG 2260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2135 TCGACTTCTTTGAAAGAGTGGGCAAAGGCTAAGAAGGCATTGAGTGAGCCTAGGAGAAAG 2194
Query 2261 AAAAATAGCGAAGAATGAGTTA-AT---ACTA---TCAGAGGCTCTTCAAATTATGTATC 2313
|||||| | ||||| ||||||| || | || | ||||||||||||||||||||||
Sbjct 2195 AAAAATGGTGAAGACTGAGTTAGATTGTAATAAGATGAGAGGCTCTTCAAATTATGTATT 2254
Query 2314 CCTCCACAGTTTTTG 2328
|||| ||| ||||||
Sbjct 2255 CCTCTACAATTTTTG 2269
Score = 196 bits (106), Expect = 5e-49
Identities = 122/130 (94%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1290 ACACAGCTTGTGAATCTATGGCAGATGACACAGCTAGTGACTCTGTGGCTGAGAGGGATG 1349
|||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1371 ACACAGCTAGTGACTCTATGGCAGATGATGCAGCTAGTGACGCTGTGGCTGAGAGCGATG 1430
Query 1350 ATAGTGATGCTGTGGAAGATGACACAGCTATTGACTCTATGGCAGATGACCCAGCTAGTG 1409
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1431 ATAGTGATGCTGTGGAATATGACACAGCTATTGACTCTATGGCAGATGACACAGCTAGTG 1490
Query 1410 ACTCTGTGGC 1419
||||||||||
Sbjct 1491 ACTCTGTGGC 1500
Score = 121 bits (65), Expect = 3e-26
Identities = 76/81 (94%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 1259 GAGAGGGATGATAGTGATGCTGTGGAATATTACACAGCT-TGTGAATCTATGGCAGATGA 1317
||||| |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||
Sbjct 1421 GAGAGCGATGATAGTGATGCTGTGGAATATGACACAGCTAT-TGACTCTATGGCAGATGA 1479
Query 1318 CACAGCTAGTGACTCTGTGGC 1338
|||||||||||||||||||||
Sbjct 1480 CACAGCTAGTGACTCTGTGGC 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91149956285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5