BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58170.1
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950518 jgi|Araly1|950518|scaffold_802405.1 3241 0.0
Ahg950506 jgi|Araly1|950506|scaffold_802393.1 3097 0.0
> Ahg950518 jgi|Araly1|950518|scaffold_802405.1
Length=2306
Score = 3241 bits (1755), Expect = 0.0
Identities = 2096/2263 (93%), Gaps = 14/2263 (1%)
Strand=Plus/Plus
Query 152 ACAGAGATGCTGAGGTTTATCATATTTTTCTCCCTTTTTATACACTTATGTGTTGCAGCC 211
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 15 ACAGAGATGCTGAGGTTTATCATCTTTTTCTCCCTTTTTATACACTTATGTGTTGCGGCC 74
Query 212 CCCCAGACTCCTGCTG-CTGCCGCGGCGGTTCCTGCTAAGAAATGGCTCACCCTTAATGG 270
||| |||||||||| | ||||||| || |||||| | |||||||||||||||||||| ||
Sbjct 75 CCCAAGACTCCTGC-GTCTGCCGCTGCTGTTCCTACCAAGAAATGGCTCACCCTTAACGG 133
Query 271 ACAAGAGCCTGCCGTTGTGGCCAGAGGGGGCTTCTCGGGTCTTTTCCCTGAGTCAAGCGC 330
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 134 GCAAGAGCCTGCAGTTGTGGCCAGAGGCGGCTTCTCGGGTCTTTTCCCTGAGTCAAGCGC 193
Query 331 CTCTGCAAACGACTTGGCTATTGGCACCAGCTCGCCTGGCCTCACAATGTTGTGCAACCT 390
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 194 CCCTGCAAACGACATGGCTATTAGCACCAGCTCGCCTGGCCTCACAATGTTGTGCAACCT 253
Query 391 TCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCATACTTGACAATGCAAC 450
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 TCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTTGACAATGCAAC 313
Query 451 CACCATATCTTCAG-TCTTCCCTAAAGCCCAGAAGACCTACAAGGTCAACGGTCAGGACC 509
|||||| || || | ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 314 CACCATCTCCTC-GCTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAATGGTCAGGACC 372
Query 510 TCAAGGGATGGTTTGTCCTTGATTACGATGCCGACACCATCTTCAACAATGTCACTTTGG 569
||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 373 TCAAGGGCTGGTTTGTCCTTGATTATGATGCCGACACCATCTTCTCCAATGTCTCTTTGG 432
Query 570 TCCAGAACATCTTCTCTCGGCCTAGCATCTTCGACGGCCAAATGTCGGTTTCCGCAGTGG 629
|||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 433 TCCAGAACATCTTCTCACGGCCCAGCATCTTTGACGGCCAAATGCCGGTTTCCGCAGTGG 492
Query 630 AGGACGTCCTTGGAACCAAGCCTCCCAAGTTTTGGTTGAGCGTTCAGTACGATGCCTTCT 689
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 493 AGGACGTCCTCGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTACGATGCCTTCT 552
Query 690 ACATGGAACACAAGCTGAGCCCAGCCGAGTACCTGAGAAGCTTGCAATTCCGCGGCATTA 749
|||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 553 ACATGGAACACAAGCTGAGCGCAGCCGAATACCTGAGAAGCTTGCGATTCCGCGGCATTA 612
Query 750 ATGTCATCTCATCTCCAGAGATTGGTTTCTTGAAGAGCATCGGGATGGACGCGGGCAGGG 809
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||
Sbjct 613 ATGTCATCTCATCTCCAGAGATCGGTTTCTTGAAGAGCATTGGGATGGACGCAGGAAGGG 672
Query 810 CCAAGACAAAGCTCATATTCGAGTTCAAAGA-CCCAGAGGC-AGTTGAGCCCACCACCAA 867
|||||||||||||||| |||||||||||||| ||| ||||| | ||||||||||||| ||
Sbjct 673 CCAAGACAAAGCTCATTTTCGAGTTCAAAGAGCCC-GAGGCGA-TTGAGCCCACCACAAA 730
Query 868 CAAGAAGTACAGTGAGA-TTCAGCAGAACCTCGCAGCCATCAAGGCCTTTGCTTCAGGCG 926
|||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 CAAGAAGTACAGCGA-ACTTCAGCAGAACCTCGCAGCAATCAAGGCCTTTGCTTCAGGCG 789
Query 927 TTCTTGTGCCCAAAGACTACATTTGGCCCATTGACTCAGCTAAGTACCTTAAGCCCGCCA 986
||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 790 TTCTTGTCCCCAAAGACTACATCTGGCCCCTTGACTCAGCTAACTACCTTAAGCCCGCCA 849
Query 987 CCACTTTTGTGGCTGATGCCCACAAAGCCGGTCTAGAGGTCTATGCTTCAGGGTTTGCCA 1046
|||| ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 850 CCACCTTTGTGGCTGATGCCCACAAAGCTGGTCTAGAGGTGTATGCTTCTGGATTTGCCA 909
Query 1047 ATGACTTGCGCACCAGCTTTAACTACAGCTATGATCCCTCCGCTGAGTATCTCCAGTTTG 1106
| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 910 ACGACATGCGCACCAGCTTCAACTACAGCTATGATCCCTCTGCTGAGTATCTCCAGTTTG 969
Query 1107 TGGACAATGGCCAGTTTTCTGTTGATGGCGTCATTACTGATTTCCCGCCAACAGCATCAC 1166
|||||||||||||||| ||||||||||| || || || ||||||||||||||||||||||
Sbjct 970 TGGACAATGGCCAGTTCTCTGTTGATGGAGTTATCACCGATTTCCCGCCAACAGCATCAC 1029
Query 1167 AATCCATCACTTGCTTTTCTCACCAAAATGGCAATCTCCCCAAAGCAGGGCATGCGTTGG 1226
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1030 AATCCATCACGTGCCTTTCTCACCAAAAGGGCAATCTCCCCAAAGCAGGGCATGCATTGG 1089
Query 1227 TTATAACTCACAATGGAGCAAGCGGAGACTATCCAGGCTGCACTGATCTGGCTTACCAGA 1286
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1090 TTATAACTCACAATGGAGCAAGCGGGGACTATCCAGGCTGCACAGATCTGGCTTACCAGA 1149
Query 1287 AAGCAGTCGATGATGGAGCAGACGTGATCGACTGCTCTGTTCAGATGTCTAAAGACGGAA 1346
|||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1150 AAGCAGTCGACGAGGGAGCAGACGTGATCGATTGCTCTGTTCAGATGTCCAAAGACGGAA 1209
Query 1347 TCGCTTTCTGCCATGATGCTGCAGACCTTACAGCAAGTACCACCGCCATGACTATTTTCA 1406
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1210 TCGCTTTCTGCCATGATGCTGCAGACCTCACAGCAAGTACCACCGCCATGACTACTTTCA 1269
Query 1407 TGTCCCGAGCCACAAGCGTTCCTGAGATCCAGCCTACCAATGGCATTTTTTCTTTTGATC 1466
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1270 TGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGCATTTTCTCTTTTGATC 1329
Query 1467 TTACATGGGCTGAGATCCAGTCTGTGAAGCCACAAATAGAGAACCCCTTCACTGCCACGG 1526
| || ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 1330 TCACCTGGGCCGAGATCCAGTCTGTGAAGCCACAAATCGAGAGCCCCTTCACTGCCACAG 1389
Query 1527 GCTTCCAGAGAAATCCAGCAAACAAAAACGCTGGAAAGTTCATTACTCTTGCGGA-TTTC 1585
||||||||||||| ||||||||||| || || || |||||||| ||||| || || ||||
Sbjct 1390 GCTTCCAGAGAAACCCAGCAAACAAGAATGCCGGGAAGTTCATAACTCTCGCAGAATTTC 1449
Query 1586 CTTGACTTCAGCAAAGCAAAGGCTGTCACCGGAGTTATGATCAACATCGAGAATGCTGCT 1645
|||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1450 -TTGACTTCAGCAAAGCAAAGGCAGTCGCCGGAGTTCTGATCAACATCGAGAATGCTGCT 1508
Query 1646 TACCTAGCCTCAAAGAAGGGCCTAGGAGTCGTAGACGCAGTTAAGTCGGCTCTGGCCAAG 1705
|| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1509 TATTTAGCCTCAAAGAAAGGCTTAGGAGTCGTAGACGCAGTTAAGTCGGCTCTGGCCAAA 1568
Query 1706 TCCACACTCGACAAGCAATCAACTCAGAAAGTTTTGATTCAGTCAGATGACAGTTCGGTC 1765
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1569 TCCACACTCGACAAGCAATCAACTCAGAAAGTTTTGATTCAGTCAGATGACACTTCAGTT 1628
Query 1766 CTGGCCAGTTTTGAGGCTGTCCCTCCGTACACGAGAGTCTTGAGCATTGACAAGGAAATC 1825
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1629 CTGGCCAGTTTTGAGGCTGTACCTCCGTACACCAGAGTCTTGAGCATTGAAAAGGAAATC 1688
Query 1826 GGAGGTGCTCCCAAGCCATCAGTCGATGAAATCAAGAAGTACGCAGAAGCTGTCAATCTC 1885
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1689 GGAGGTGCTCCCAAGCCATCGGTTGATGAAATCAAGAAGTACGCAGATGCTGTCAATCTC 1748
Query 1886 TTGAGAACTTCCCTAGTCACTGTCTCCCAAAGTTTTACCACAGGGAAGACTAACGTTGTG 1945
||||||||||||| ||||| ||||||||||| ||| ||||||| || |||||||| ||
Sbjct 1749 ATGAGAACTTCCCTCGTCACCGTCTCCCAAAGCTTTGCCACAGGAAAAACTAACGTGGTA 1808
Query 1946 GAGGAAATGCACAAAGGGAATATCTCTGTTTATGTTTCAGTGCTAAGAAACGAGTACATC 2005
|||||||||||||||| ||||||||||||||| || || || ||||||||||||||||||
Sbjct 1809 GAGGAAATGCACAAAGCGAATATCTCTGTTTACGTCTCGGTCCTAAGAAACGAGTACATC 1868
Query 2006 TCCGTAGCGTTCGACTACTTCTCTGACCCTACAATAGAGCTTGCCACATTCATTTCAGGG 2065
||| |||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||
Sbjct 1869 TCCATAGCGTTCGACTACTTCTCTGATCCTACGGTAGAGCTTGCAACATTCATTGCAGGG 1928
Query 2066 AGTGGCGTTGATGGAGTCATCACGGAGTTCCCTGCCACCGCTACCAGATACTTAAAGAGT 2125
|||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 1929 AGTGGCGTCGATGGAGTAATCACAGAGTTCCCTGCCACCGCAACCAGATACTTAAGGAGT 1988
Query 2126 CCATGCTCAGATTTGAACAAAGAACAGCCCTATGCAATCTTACCAGCAGAAGCCGGTGGT 2185
|||||||||||||| |||||||| ||||||||||| |||||||| || ||||| || | |
Sbjct 1989 CCATGCTCAGATTTAAACAAAGACCAGCCCTATGCCATCTTACCTGCGGAAGCTGGCGCT 2048
Query 2186 CTAGTCGTC-GTGGCAGACAAGGAAGCACAACCACCAGCTAGTGCCCCAAACCCGCCTCT 2244
||| || || || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2049 CTACTC-TCTGTTGCAGACAAGGAAGCACAACCACCAGCTAGTGCGCCAAACCCACCTCT 2107
Query 2245 TGAGGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAACTTGGCTGCCTCCAA 2304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TGATGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAACTTGGCTGCCTCCAA 2167
Query 2305 TGCAACTGGAGGAGCTCAGTCACATCCTCCTCCTGCTTCAGGAACCGTTGCCAACGCTGC 2364
||||||||||||||||||| ||||||| |||||| ||||||| |||||| ||| | ||||
Sbjct 2168 TGCAACTGGAGGAGCTCAGCCACATCCCCCTCCTCCTTCAGGCACCGTTTCCATCACTGC 2227
Query 2365 AAATCTCGGTCTTTCCTTGCTGGCAATGTTGGCCTTAGGAGTC 2407
|||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2228 TAATCTCGGCCTTTCCTTGCTGGCAATGTTGGCCTTGGGAGTC 2270
> Ahg950506 jgi|Araly1|950506|scaffold_802393.1
Length=2305
Score = 3097 bits (1677), Expect = 0.0
Identities = 2078/2273 (91%), Gaps = 21/2273 (1%)
Strand=Plus/Plus
Query 142 GATCAATCATACAGAGATGCTGAGGTTTATCATAT-TTTTCTCCCTTTT-TATACACTTA 199
||||||||| | |||||||||||||||| |||| | ||||||||||||| | ||||||
Sbjct 6 GATCAATCACA-AGAGATGCTGAGGTTTTTCAT-TCTTTTCTCCCTTTTCT-TACACTCC 62
Query 200 TGTGTTGCAGCCCCCCAGACTCCTGCTGCTGCCGCGGCGGTTCCTGCTAAGAAATGGCTC 259
|||||||| || ||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 63 TGTGTTGCGGCACCCAAGACTCCTGCTGCTGCCGCGGCTGTTCCTGCCAAGAAATGGCTT 122
Query 260 ACCCTTAATGGACAAGAGCCTGCCGTTGTGGCCAGAGGGGGCTTCTCGGGTCTTTTCCCT 319
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 ACCCTTAACGGACAAGAGCCTGCCGTTGTGGCCAGAGGCGGCTTCTCGGGTCTTTTCCCT 182
Query 320 GAGTCAAGCGCCTCTGCAAACGACTTGGCTATTGGCACCAGCTCGCCTGGCCTCACAATG 379
|||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 183 GAGTCAAGCGCCCCTGCAAACGACATGGCTGTTAGCACCAGCTCGCCTGGCCTCACAATG 242
Query 380 TTGTGCAACCTTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCATACTT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 243 TTGTGCAACCTTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTT 302
Query 440 GACAATGCAACCACCATATCTTCAG-TCTTCCCTAAAGCCCAGAAGACCTACAAGGTCAA 498
||||||||||||||||| || || | ||||||| ||||||||||||||||||||||||||
Sbjct 303 GACAATGCAACCACCATCTCCTC-GCTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAA 361
Query 499 CGGTCAGGACCTCAAGGGATGGTTTGTCCTTGATTACGATGCCGACACCATCTTCAACAA 558
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CGGTCAGGACCTCAAGGGCTGGTTTGTCCTTGATTACGATGCCGACACCATCTTCTCCAA 421
Query 559 TGTCACTTTGGTCCAGAACATCTTCTCTCGGCCTAGCATCTTCGACGGCCAAATGTCGGT 618
|||| || ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 422 TGTCTCTCTGGTCCAAAACATCTTCTCTCGGCCCAGCATCTTCGACGGCCAAATGCCGGT 481
Query 619 TTCCGCAGTGGAGGACGTCCTTGGAACCAAGCCTCCCAAGTTTTGGTTGAGCGTTCAGTA 678
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 482 TTCCGCAGTGGAGGACGTCCTCGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTA 541
Query 679 CGATGCCTTCTACATGGAACACAAGCTGAGCCCAGCCGAGTACCTGAGAAGCTTGCAATT 738
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 542 CGATGCCTTCTACATGGAACACAAGCTGAGCGCAGCCGAGTACCTGAGAAGCTTGCGATT 601
Query 739 CCGCGGCATTAATGTCATCTCATCTCCAGAGATTGGTTTCTTGAAGAGCATCGGGATGGA 798
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 602 CCGCGGCATTAATGTCATTTCATCTCCAGAGATAGGTTTCTTGAAGAGCATTGGGATGGA 661
Query 799 CGCGGGCAGGGCCAAGACAAAGCTCATATTCGAGTTCAAAGA-CCCAGAGGCAGTTGAGC 857
||| ||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 662 CGCAGGCAGGGCCAAAACAAAGCTCATATTCGAGTTCAAAGAGCCC-GAGGCAATTGAGC 720
Query 858 CCACCACCAACAAGAAGTACAGTGAGATTCAGCAGAACCTCGCAGCCATCAAGGCCTTTG 917
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 721 CCACCACAAACAAGAAGTACAGCGAGCTTCAGCAGAACCTCGCAGCCATCAAGGCCTTTG 780
Query 918 CTTCAGGCGTTCTTGTGCCCAAAGACTACATTTGGCC-CATTGACTCAGCTAAGTACCTT 976
|||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 781 CTTCAGGCGTTCTTGTCCCCAAAGACTACATTTGGCCTC-TTGACTCAGCTAAGTACCTT 839
Query 977 AAGCCCGCCACCACTTTTGTGGCTGATGCCCACAAAGCCGGTCTAGAGGTCTATGCTTCA 1036
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AAGCCTGCCACCACTTTTGTGGCTGATGCCCATAAAGCCGGTCTAGAGGTCTATGCTTCT 899
Query 1037 GGGTTTGCCAATGACTTGCGCACCAGCTTTAACTACAGCTATGATCCCTCCGCTGAGTAT 1096
||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||| ||||||||
Sbjct 900 GGGTTTGCCAACGACATGCGCACTAGCTTCAACTACAGCTACGATCCCTCCACTGAGTAT 959
Query 1097 CTCCAGTTTGTGGACAATGGCCAGTTTTCTGTTGATGGCGTCATTACTGA-TTTCCCGCC 1155
||||||||||||||||||||| |||| ||||||||||||||||| || || ||||| ||
Sbjct 960 CTCCAGTTTGTGGACAATGGCGAGTTCTCTGTTGATGGCGTCATCACCGACTTTCCA-CC 1018
Query 1156 AACAGCATCACAATCCATCACTTGCTTTTCTCACCAAAATGGCAATCTCCCCAAAGCAGG 1215
||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1019 AACAGCATCACAAGCCATCACTTGCTTTTCTCACCAAAAGGGCAATCTCCCAAAAGCAGG 1078
Query 1216 GCATGCGTTGGTTATAACTCACAATGGAGCAAGCGGAGACTATCCAGGCTGCACTGATCT 1275
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 GCATGCATTAGTTATAACTCACAATGGAGCAAGCGGGGACTATCCAGGCTGCACTGATCT 1138
Query 1276 GGCTTACCAGAAAGCAGTCGATGATGGAGCAGACGTGATCGACTGCTCTGTTCAGATGTC 1335
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGCTTACCAGAAAGCAATCGACGATGGAGCAGACGTGATCGACTGCTCTGTTCAGATGTC 1198
Query 1336 TAAAGACGGAATCGCTTTCTGCCATGATGCTGCAGACCTTACAGCAAGTACCACCGCCAT 1395
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1199 TAAAGATGGAATCGCTTTCTGCCATGATGCTGCAGACCTCACAGCAAGCACCACTGCCAT 1258
Query 1396 GACTATTTTCATGTCCCGAGCCACAAGCGTTCCTGAGATCCAGCCTACCAATGGCATTTT 1455
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1259 GACTACTTTCATGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGCATTTT 1318
Query 1456 TTCTTTTGATCTTACATGGGCTGAGATCCAGTCTGTGAAGCCACAAATAGAGAACCCCTT 1515
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1319 CTCTTTTGATCTTACATGGGCCGAGATACAGTCTGTGAAGCCACAAATCGAGAACCCCTT 1378
Query 1516 CACTGCCACGGGCTTCCAGAGAAATCCAGCAAACAAAAACGCTGGAAAGTTCATTACTCT 1575
|||| |||||||||||| |||||||||||||||||| |||||||| ||||||| |||||
Sbjct 1379 CACTTCCACGGGCTTCCTGAGAAATCCAGCAAACAAGAACGCTGGGAAGTTCACGACTCT 1438
Query 1576 TGCGGATTTCCTTGA-CTTCAGCAAAGCAAAGGCTGTCACCGGAGTTATGATCAACATCG 1634
|||||| |||||||| || |||||||| |||||| ||||| |||||| | |||||||| |
Sbjct 1439 TGCGGACTTCCTTGAGCT-CAGCAAAGAAAAGGCAGTCACTGGAGTTTTAATCAACATTG 1497
Query 1635 AGAATGCTGCTTACCTAGCCTCAAAGAAGGGCCTAGGAGTCGTAGACGCAGTTAAGTCGG 1694
||||||||||||| ||||||| ||||| ||||||||| ||||||||||||| ||||| |
Sbjct 1498 AGAATGCTGCTTATTTAGCCTCGAAGAAAGGCCTAGGAATCGTAGACGCAGTCAAGTCTG 1557
Query 1695 CTCTGGCCAAGTCCACACTCGACAAGCAATCAACTCAGAAAGTTTTGATTCAGTCAGATG 1754
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1558 CTCTGACCAATTCCACACTCGACAAGCAATCAACTCAGAAGGTTTTGATTCAGTCGGATG 1617
Query 1755 ACAGTTCGGTCCTGGCCAGTTTTGAGGCTGTCCCTCCGTACACGAGAGTCTTGAGCATTG 1814
||||||| || || | ||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 1618 ACAGTTCAGTTCTATCTAGTTTCGAGGCTGTCCCTCCTTACACTAGAGTCTTGAGTATCG 1677
Query 1815 ACAAGGAAATCGGAGGTGCTCCCAAGCCATCAGTCGATGAAATCAAGAAGTACGCAGAAG 1874
||||||| ||||||| |||||| |||||||| ||||| |||||||||||| ||||||| |
Sbjct 1678 ACAAGGAGATCGGAGATGCTCCTAAGCCATCCGTCGAAGAAATCAAGAAGCACGCAGATG 1737
Query 1875 CTGTCAATCTCTTGAGAACTTCCCTAGTCACTGTCTCCCAAAGTTTTACCACAGGGAAGA 1934
| ||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||| || |
Sbjct 1738 CCGTCAATCTCATGAGAACTTCCCTCGTCACCGTCTCCCAAAGCTTTGCCACAGGAAAAA 1797
Query 1935 CTAACGTTGTGGAGGAAATGCACAAAGGGAATATCTCTGTTTATGTTTCAGTGCTAAGAA 1994
||||||| || |||||||||||||||| ||||||||||||||| || || || |||||||
Sbjct 1798 CTAACGTGGTAGAGGAAATGCACAAAGCGAATATCTCTGTTTACGTCTCGGTCCTAAGAA 1857
Query 1995 ACGAGTACATCTCCGTAGCGTTCGACTACTTCTCTGACCCTACAATAGAGCTTGCCACAT 2054
| |||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 1858 ATGAGTACATCTCCATAGCGTTCGACTACTTCTCTGATCCTACGGTAGAGCTTGCAACAT 1917
Query 2055 TCATTTCAGGGAGTGGCGTTGATGGAGTCATCACGGAGTTCCCTGCCACCGCTACCAGAT 2114
||||| ||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct 1918 TCATTGCAGGGAGTGGCGTCGATGGAGTAATCACAGAGTTCCCTGCCACCGCAACCAGAT 1977
Query 2115 ACTTAAAGAGTCCATGCTCAGATTTGAACAAAGAACAGCCCTATGCAATCTTACCAGCAG 2174
|||||| |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 1978 ACTTAAGGAGTCCATGCTCAGATTTAAACAAAGACCAGCCCTATGCCATCTTACCTGCAG 2037
Query 2175 AAGCCGGTGGTCTAGTCGTC-GTGGCAGACAAGGAAGCACAACCACCAGCTAGTGCCCCA 2233
|||| || | |||| || || || |||||||||||||||||||||||||||||||| |||
Sbjct 2038 AAGCTGGCGCTCTACTC-TCCGTTGCAGACAAGGAAGCACAACCACCAGCTAGTGCGCCA 2096
Query 2234 AACCCGCCTCTTGAGGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAACTTG 2293
||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 2097 AACCCACCTCTTGATGCCAAAGACGTGATTGATCCGCCTCTGCCCCCGGTTGCAAACATG 2156
Query 2294 GC-TGCCTCCAATGCAACTGGAGGAGCTCAGTCACATCCTCCTCCTGCTTCAGGAACCGT 2352
|| | ||||||||| ||||||| || || | ||||| |||||||| ||||||| ||||
Sbjct 2157 GCCT-CCTCCAATGGGACTGGAGAAGGTCCGCCACATACTCCTCCTTCTTCAGGCACCGG 2215
Query 2353 TGCCAAC-GCTGCAAATCTCGGTCTTTCCTTGCTGGCAATGTTGGCCTTAGGA 2404
||||| | ||||| |||||| | |||||||||||||||||| |||| || |||
Sbjct 2216 TGCCA-CTGCTGCTAATCTCAGCCTTTCCTTGCTGGCAATGATGGCTTTGGGA 2267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98882276020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5