BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58180.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950519 jgi|Araly1|950519|scaffold_802406.1 942 0.0
Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1 545 1e-154
Ahg950520 jgi|Araly1|950520|scaffold_802407.1 422 3e-117
> Ahg950519 jgi|Araly1|950519|scaffold_802406.1
Length=644
Score = 942 bits (510), Expect = 0.0
Identities = 586/623 (94%), Gaps = 4/623 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGCGAACCCGTTATC 60
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 24 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACTCCCGAACCAGTTATC 83
Query 61 CTGGCCAACGTTTCCGACCTCTCACAATTCGGAAAATTCTCTTTTTATCGCTCTAACTTC 120
||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 84 CTGGCCAACGTCTCCGACCTCTCACAATTCGGAAAATTCAATTTCTATCGCTCTAACTTG 143
Query 121 GAAGAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAA-GAACCCCTCCAGGTCAGCG 179
|||||||||||||||||||||||| ||||||| |||| || |||||||||| |||||| |
Sbjct 144 GAAGAGTTCATTGTATTCATTGCCAGTACTGTCGCCA-AACGAACCCCTCCTGGTCAGTG 202
Query 180 CCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGCGC 239
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 203 CCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATCCCCTCTGCGC 262
Query 240 CGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAGGT 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 263 CGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCCCTTCTCAACCAGGT 322
Query 300 ATTAGATGTATACCAGAAGGATTATGGTGACACATGGAGGTTTGAAAACTCTAGTCAGCC 359
|||||||| |||| |||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 323 ATTAGATGCGTACCGGAAGGATTTTGGTGACACATGGAGGTCTGCAAACTCTAGTCAGCC 382
Query 360 GTGGCCATACTTAAAAGAAGCTTCAGACAA-ATTTCGGGACCCGGCAGAAGCTGATAAGC 418
|||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||
Sbjct 383 GTGGCCATACTTAAAAGAGGCTTTAGA-AATATTTCAGGACCCGGCAGAAGCTGATAAGC 441
Query 419 TGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAACCATTGATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAACCATTGATG 501
Query 479 GTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGAGTTAAGCC 538
||||||| | ||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 502 GTGTCCTTGACCGAGGTGAGAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCA 561
Query 539 TGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACACTTCTCT 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 562 TGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCTTGTTGTACACTTCTCT 621
Query 599 AAGCTGTAATGCAACTCTTGAAT 621
|||||| ||||||||||||||||
Sbjct 622 AAGCTGCAATGCAACTCTTGAAT 644
> Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1
Length=941
Score = 545 bits (295), Expect = 1e-154
Identities = 513/616 (83%), Gaps = 24/616 (4%)
Strand=Plus/Plus
Query 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGC-GAACCCGTTAT 59
||||||||||| |||||||| ||||||||||||| ||||||| | | || ||||| ||
Sbjct 125 ATGAAGATCACCGCCTTGCTGGTTCTCAAGTGCGCTCCCGAAGC-TTCTGATCCCGTCAT 183
Query 60 CCTGGCCAACGTTTCCGACCTCTCACAATTCGGAAAATTCTCTTTTTATCGCTCTAACTT 119
||| ||||||| ||||||| |||| || ||||| | | ||| | || |||| | |
Sbjct 184 CCTCGCCAACGCTTCCGACGTCTCTCACTTCGG-----T-TATTTCCAGCGATCTAGCGT 237
Query 120 CGAA-GAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAAGAACCCCTCCAGGTCAGC 178
| || |||||| | || || | | || ||||| ||||| |||||||||| ||||
Sbjct 238 C-AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCCAGCCGAACCCCTCCTTCCCAGC 296
Query 179 GCCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGCG 238
|||| || ||| ||||||||||||| || || ||||||||||| | ||||||||| ||||
Sbjct 297 GCCAGTCTGTCCAACACGAAGAGTACAAGGTTCACGCTTACAATAGAAATGGCCTTTGCG 356
Query 239 CCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAGG 298
| || || |||||||| || |||||||| ||||||||||| |||||||||||||||||||
Sbjct 357 CGGTGGGGTTCATGGATGATCATTATCCTGTTCGAAGTGCTTTTTCTCTTCTCAATCAGG 416
Query 299 TATTAGATGTA-TACCAGAAGGA-TTATGGTGACACATGGAGGTTTG----A-AA-ACTC 350
| |||||| | |||||||| || || |||||| ||||||||| || | || ||||
Sbjct 417 TCCTAGATG-AGTACCAGAA-GAGTTTTGGTGAGGCATGGAGGTCTGCAAAAGAAGACTC 474
Query 351 TAGTCAGCCGTGGCCATACTTAAAAGAAGCTTCAGACAAATTTCGGGACCCGGCAGAAGC 410
|||||||| ||||||||||||| |||||||| | ||||||||| |||||| ||||| ||
Sbjct 475 CAGTCAGCCTTGGCCATACTTAACAGAAGCTTTAAACAAATTTCAGGACCCAGCAGAGGC 534
Query 411 TGATAAGCTGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAAC 470
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 TGATAAGCTGTTGAAAATTCAGAGGGAGTTGGATGAGACCAAGATTATCCTTCATAAAAC 594
Query 471 CATTGATGGTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGA 530
||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 595 CATTGATAGTGTTCTAGCCCGTGGTGAGAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGA 654
Query 531 GTTAAGCCTGGCATCGA-AGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTA 589
|| ||| ||||||| | ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 655 TTTGAGCATGGCATC-ACAGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTA 713
Query 590 C-ACTTCTCTAAGCTG 604
| | |||| | |||||
Sbjct 714 CTA-TTCTGTGAGCTG 728
> Ahg950520 jgi|Araly1|950520|scaffold_802407.1
Length=475
Score = 422 bits (228), Expect = 3e-117
Identities = 280/304 (92%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGCGAACCCGTTATC 60
||||||||||||||||||||||||||||| ||||||||| |||||| | |||| ||||||
Sbjct 21 ATGAAGATCACTGCCTTGCTCGTTCTCAAATGCGATCCCAAAACACCCAAACCAGTTATC 80
Query 61 CTGGCCAACGTTTCCGACCTCTCACAATTCGGAAA-ATTCTCTTTTTATCGCTCTAACTT 119
||||||||||||||| |||||| ||||||| |||| || | |||| ||||||||||||||
Sbjct 81 CTGGCCAACGTTTCCAACCTCTTACAATTC-GAAATATGCACTTTCTATCGCTCTAACTT 139
Query 120 CGAAGAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAA-GAACCCCTCCAGGTCAGC 178
||||||||||| |||||||||||||||||||| |||| || |||||||||| ||||||
Sbjct 140 GGAAGAGTTCATCGTATTCATTGCCCGTACTGTCGCCA-AACGAACCCCTCCTGGTCAGT 198
Query 179 GCCAA-TCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGC 237
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 G-CAACTCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGT 257
Query 238 GCCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 258 GCCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCGATCAG 317
Query 298 GTAT 301
|||
Sbjct 318 -TAT 320
Score = 207 bits (112), Expect = 8e-53
Identities = 141/155 (91%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 467 AAACCATTGATGGTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCT 526
|||| | ||||| |||||||| |||||||| ||||||||||||||||||||| ||| |
Sbjct 322 AAACTACTGATGATGTCCTAGGAAGAGGTGAAGAGCTGGACAGCTTAGTGGAGAGGAG-T 380
Query 527 -CAGAGTTAAGCCTGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGT 585
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 381 ACAAAGTTAAGCCTGGCATCTAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGT 440
Query 586 TGTACACTTCTCTAAGCTGTAATGCAACTCTTGAA 620
|||||| |||||||||||||||||||| |||||||
Sbjct 441 TGTACAATTCTCTAAGCTGTAATGCAATTCTTGAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5