BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58190.2
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332107 jgi|Araly1|332107|fgenesh1_pm.C_scaffold_8001450 1910 0.0
> Ahg332107 jgi|Araly1|332107|fgenesh1_pm.C_scaffold_8001450
Length=1650
Score = 1910 bits (1034), Expect = 0.0
Identities = 1194/1271 (94%), Gaps = 11/1271 (1%)
Strand=Plus/Plus
Query 379 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTTAACCC 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 390 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTCAACCC 449
Query 439 TTATCCTTCTGTAATGTTGGAGGGACAAATTCCAGTCTCCCCAGCTTATTACCCACAACC 498
|||||||||| ||||| ||||||| |||||||||||||| ||||||||||| || | |||
Sbjct 450 TTATCCTTCTATAATGCTGGAGGGCCAAATTCCAGTCTCTCCAGCTTATTA-CC-C-ACC 506
Query 499 TTTTGGTGCACCTTCTGCAATGCATTATTTACCCTCAGATATTGACCCAACATCTGCTGC 558
|| ||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||
Sbjct 507 TTATGGTGCACCTTCTGCTATGCATTATATACCCTCAGATATTGACCCAACA--T-CTGC 563
Query 559 TTATATGATTCCTTACGGGCAATATGGTGGAGGGAATTATTCCGGAAATCAAGGGGACAT 618
|||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 564 TTATATGATTCCTTTTGGGCAATATGGTGGAGCCAATTATTCCGGGAATCAAGGGGACAC 623
Query 619 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATACGACCA 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 624 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATATGACCA 683
Query 679 TAATGCTTCACAGGTAGCGTTGCATGGGAGCGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 738
|| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 684 TACTGCTTCACAGGTACCGTTGCATGGGAGTGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 743
Query 739 TTATTATCATGTAGGATCTTACCAGAATCCTAGCTCTACCCCCTCATATTATGGAGTTGA 798
||| |||||||||||||||||||||| ||| | ||||| | ||||||||||||||| |||
Sbjct 744 TTACTATCATGTAGGATCTTACCAGAGTCCCAACTCTATCTCCTCATATTATGGAGCTGA 803
Query 799 TAATCGAGTCAGATTAACCCCTGACATAGGTAAAAGACGAGAGAAGGATCAGGGCTCTAT 858
|||||||| |||||||||||| ||| |||||||| | ||||||||||| ||||||||| |
Sbjct 804 TAATCGAGCCAGATTAACCCCCGACCTAGGTAAACGGCGAGAGAAGGAGCAGGGCTCTGT 863
Query 859 ATCTA-GCACCAGTGATCTGTATGGTAATCGAGGACCACGGGCATCAAGCAGGGTAAAGA 917
||||| | |||| ||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 864 ATCTATG-ACCAATGATCTGTATGGTAACCGAGGACCAAGGGCATCCAGCAGGGTAAAGA 922
Query 918 GCAAGAACAGCTCCAAACCTTGCTCTACTATTGGTGATTCAGCAAGCGATTCAAGTACAG 977
|||| |||||||| |||| ||||||||||| |||||||||| | || ||||||||||| |
Sbjct 923 GCAAAAACAGCTCTAAACTTTGCTCTACTACTGGTGATTCAACGAGTGATTCAAGTACCG 982
Query 978 CTGGACCAAATCCCAGTTTGTACAACCATCCAGAATTTGTGACAGATTATAAGAATGCCA 1037
|||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||
Sbjct 983 CTGGACCAAATCCCAGTTTGTACAACAACCCAGAATTTGTGATAGATTACAAGAATGCCA 1042
Query 1038 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1102
Query 1098 TCTGGGCCAGTACACCGCATGGCAACAAAAAATTAGACACTGCTTATCGGGATGCTGAGA 1157
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1103 TCTGGGCTAGCACACCGCATGGCAACAAAAAATTAGATACTGCTTATCGGGATGCTGAGA 1162
Query 1158 AGATGGGAGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1217
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGATGGGTGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1222
Query 1218 GTGGGGTGTCAGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1277
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GTGGGGTGTCGGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1282
Query 1278 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1342
Query 1338 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTAACGCACAGCCGAG 1397
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1343 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTTACGCACAGCCGAG 1402
Query 1398 ATTCTCAGGAGGTGAAGCTACGCCAGGGGATTGAGATGCTTAGAATTTTCAAAGAATACG 1457
||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
Sbjct 1403 ATTCTCAGGAGGTGAAGCTGCGTCAAGGGATTGAGATGCTTAGAATTTTCAAAGAATATG 1462
Query 1458 AGGCACACACATCAATCCTTGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1517
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AGGCACACACATCAATCCTCGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1522
Query 1518 TGGGAGAAGATGGAACAAGGAAAAAAGCTGGGGAAGAAGAGACCTCCGTGGAGCAATTAT 1577
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 1523 TGGGAGAAGATGGAACAAGGAAAGAAGCTAGGGAAGAAGAGACCTCCGTGGAGCAGTTAT 1582
Query 1578 CAGAGCGCCTTCAAGCTGTCAAAGTAGAAGATGGGAAGGAGGAGGaaaaaaaaGAGTTAA 1637
||||||| ||||||||||||| |||||||||||| |||||||| |||| || |||||||
Sbjct 1583 CAGAGCGTCTTCAAGCTGTCACAGTAGAAGATGGCAAGGAGGA--AAAAGAA-GAGTTAA 1639
Query 1638 TAGCTGATTGA 1648
|||||||||||
Sbjct 1640 TAGCTGATTGA 1650
Score = 435 bits (235), Expect = 7e-121
Identities = 297/325 (91%), Gaps = 11/325 (3%)
Strand=Plus/Plus
Query 62 atggatcccgcttcttcttcttcctcAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCCG---CTTCTTCTTCCTCAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 57
Query 122 AGACCAGTGATGGCTGATAATGGCGTCCAACAGCAGGTTTCTCACGACGATGGAAGGAAC 181
|||||||||||||| ||||||||||||| | | |||||||||||||| || | |||||||
Sbjct 58 AGACCAGTGATGGCCGATAATGGCGTCC-A-A-CAGGTTTCTCACGAAGACGAAAGGAAC 114
Query 182 ATTGTTTCTTCGTCTTATAGTTCTTC--C-GTGGTTCCTTCTCCTGATCCCGCTCCTTAT 238
||||||||||| |||||| |||||| | | |||||||||||||||||||||||||||
Sbjct 115 ATTGTTTCTTCTTCTTATTCTTCTTCTTCAATTGTTCCTTCTCCTGATCCCGCTCCTTAT 174
Query 239 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATATCGCAAATTCT 298
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 175 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATGTCGCACATTCT 234
Query 299 GGCTATGCACAAGGCATCAATACTTGGGATGGATATCCACGATATGCTACTACTACCCCT 358
|| || |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 235 GGTTACGCACAAGGCATCAATAGTTGGGATGGTTATCCACGATATGCTGCTACTACCCCT 294
Query 359 GAAG-CCATGCATGTGCCACCGGTT 382
|||| || ||||||| |||||||||
Sbjct 295 GAAGGCC-TGCATGTCCCACCGGTT 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5