BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58190.2 Length=1834 Score E Sequences producing significant alignments: (Bits) Value Ahg332107 jgi|Araly1|332107|fgenesh1_pm.C_scaffold_8001450 1910 0.0 > Ahg332107 jgi|Araly1|332107|fgenesh1_pm.C_scaffold_8001450 Length=1650 Score = 1910 bits (1034), Expect = 0.0 Identities = 1194/1271 (94%), Gaps = 11/1271 (1%) Strand=Plus/Plus Query 379 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTTAACCC 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 390 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTCAACCC 449 Query 439 TTATCCTTCTGTAATGTTGGAGGGACAAATTCCAGTCTCCCCAGCTTATTACCCACAACC 498 |||||||||| ||||| ||||||| |||||||||||||| ||||||||||| || | ||| Sbjct 450 TTATCCTTCTATAATGCTGGAGGGCCAAATTCCAGTCTCTCCAGCTTATTA-CC-C-ACC 506 Query 499 TTTTGGTGCACCTTCTGCAATGCATTATTTACCCTCAGATATTGACCCAACATCTGCTGC 558 || ||||||||||||||| ||||||||| ||||||||||||||||||||||| | |||| Sbjct 507 TTATGGTGCACCTTCTGCTATGCATTATATACCCTCAGATATTGACCCAACA--T-CTGC 563 Query 559 TTATATGATTCCTTACGGGCAATATGGTGGAGGGAATTATTCCGGAAATCAAGGGGACAT 618 |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| Sbjct 564 TTATATGATTCCTTTTGGGCAATATGGTGGAGCCAATTATTCCGGGAATCAAGGGGACAC 623 Query 619 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATACGACCA 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 624 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATATGACCA 683 Query 679 TAATGCTTCACAGGTAGCGTTGCATGGGAGCGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 738 || ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 684 TACTGCTTCACAGGTACCGTTGCATGGGAGTGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 743 Query 739 TTATTATCATGTAGGATCTTACCAGAATCCTAGCTCTACCCCCTCATATTATGGAGTTGA 798 ||| |||||||||||||||||||||| ||| | ||||| | ||||||||||||||| ||| Sbjct 744 TTACTATCATGTAGGATCTTACCAGAGTCCCAACTCTATCTCCTCATATTATGGAGCTGA 803 Query 799 TAATCGAGTCAGATTAACCCCTGACATAGGTAAAAGACGAGAGAAGGATCAGGGCTCTAT 858 |||||||| |||||||||||| ||| |||||||| | ||||||||||| ||||||||| | Sbjct 804 TAATCGAGCCAGATTAACCCCCGACCTAGGTAAACGGCGAGAGAAGGAGCAGGGCTCTGT 863 Query 859 ATCTA-GCACCAGTGATCTGTATGGTAATCGAGGACCACGGGCATCAAGCAGGGTAAAGA 917 ||||| | |||| ||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 864 ATCTATG-ACCAATGATCTGTATGGTAACCGAGGACCAAGGGCATCCAGCAGGGTAAAGA 922 Query 918 GCAAGAACAGCTCCAAACCTTGCTCTACTATTGGTGATTCAGCAAGCGATTCAAGTACAG 977 |||| |||||||| |||| ||||||||||| |||||||||| | || ||||||||||| | Sbjct 923 GCAAAAACAGCTCTAAACTTTGCTCTACTACTGGTGATTCAACGAGTGATTCAAGTACCG 982 Query 978 CTGGACCAAATCCCAGTTTGTACAACCATCCAGAATTTGTGACAGATTATAAGAATGCCA 1037 |||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| Sbjct 983 CTGGACCAAATCCCAGTTTGTACAACAACCCAGAATTTGTGATAGATTACAAGAATGCCA 1042 Query 1038 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1043 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1102 Query 1098 TCTGGGCCAGTACACCGCATGGCAACAAAAAATTAGACACTGCTTATCGGGATGCTGAGA 1157 ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1103 TCTGGGCTAGCACACCGCATGGCAACAAAAAATTAGATACTGCTTATCGGGATGCTGAGA 1162 Query 1158 AGATGGGAGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1217 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 AGATGGGTGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1222 Query 1218 GTGGGGTGTCAGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1277 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1223 GTGGGGTGTCGGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1282 Query 1278 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1283 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1342 Query 1338 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTAACGCACAGCCGAG 1397 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1343 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTTACGCACAGCCGAG 1402 Query 1398 ATTCTCAGGAGGTGAAGCTACGCCAGGGGATTGAGATGCTTAGAATTTTCAAAGAATACG 1457 ||||||||||||||||||| || || |||||||||||||||||||||||||||||||| | Sbjct 1403 ATTCTCAGGAGGTGAAGCTGCGTCAAGGGATTGAGATGCTTAGAATTTTCAAAGAATATG 1462 Query 1458 AGGCACACACATCAATCCTTGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1517 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1463 AGGCACACACATCAATCCTCGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1522 Query 1518 TGGGAGAAGATGGAACAAGGAAAAAAGCTGGGGAAGAAGAGACCTCCGTGGAGCAATTAT 1577 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| Sbjct 1523 TGGGAGAAGATGGAACAAGGAAAGAAGCTAGGGAAGAAGAGACCTCCGTGGAGCAGTTAT 1582 Query 1578 CAGAGCGCCTTCAAGCTGTCAAAGTAGAAGATGGGAAGGAGGAGGaaaaaaaaGAGTTAA 1637 ||||||| ||||||||||||| |||||||||||| |||||||| |||| || ||||||| Sbjct 1583 CAGAGCGTCTTCAAGCTGTCACAGTAGAAGATGGCAAGGAGGA--AAAAGAA-GAGTTAA 1639 Query 1638 TAGCTGATTGA 1648 ||||||||||| Sbjct 1640 TAGCTGATTGA 1650 Score = 435 bits (235), Expect = 7e-121 Identities = 297/325 (91%), Gaps = 11/325 (3%) Strand=Plus/Plus Query 62 atggatcccgcttcttcttcttcctcAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 121 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCCCG---CTTCTTCTTCCTCAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 57 Query 122 AGACCAGTGATGGCTGATAATGGCGTCCAACAGCAGGTTTCTCACGACGATGGAAGGAAC 181 |||||||||||||| ||||||||||||| | | |||||||||||||| || | ||||||| Sbjct 58 AGACCAGTGATGGCCGATAATGGCGTCC-A-A-CAGGTTTCTCACGAAGACGAAAGGAAC 114 Query 182 ATTGTTTCTTCGTCTTATAGTTCTTC--C-GTGGTTCCTTCTCCTGATCCCGCTCCTTAT 238 ||||||||||| |||||| |||||| | | ||||||||||||||||||||||||||| Sbjct 115 ATTGTTTCTTCTTCTTATTCTTCTTCTTCAATTGTTCCTTCTCCTGATCCCGCTCCTTAT 174 Query 239 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATATCGCAAATTCT 298 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 175 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATGTCGCACATTCT 234 Query 299 GGCTATGCACAAGGCATCAATACTTGGGATGGATATCCACGATATGCTACTACTACCCCT 358 || || |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| Sbjct 235 GGTTACGCACAAGGCATCAATAGTTGGGATGGTTATCCACGATATGCTGCTACTACCCCT 294 Query 359 GAAG-CCATGCATGTGCCACCGGTT 382 |||| || ||||||| ||||||||| Sbjct 295 GAAGGCC-TGCATGTCCCACCGGTT 318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68867162960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5