BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58200.2 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg917537 jgi|Araly1|917537|Al_scaffold_0008_2288 1254 0.0 > Ahg917537 jgi|Araly1|917537|Al_scaffold_0008_2288 Length=891 Score = 1254 bits (679), Expect = 0.0 Identities = 776/822 (94%), Gaps = 9/822 (1%) Strand=Plus/Plus Query 171 CAGGTGATTTTGGTGAAGAAAACGTCCCACTGGTTCAAAGTGTTGCCGCTCTTACTTTCC 230 |||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||| Sbjct 77 CAGGTGATTTTGGTGAGGAAAACGTCCCGCTTGTTCAAAGCGTTGCCGCTCTTACTTTCC 136 Query 231 CTAAAGCAGTCATATTGGGGAATCATGATGCCTGGTTCACCCAAGATTTTCCAAGGAAAG 290 |||||||||| |||||||| |||||||||||||||||||||| || ||||||| | | Sbjct 137 CTAAAGCAGTTATATTGGGAAATCATGATGCCTGGTTCACCCTTGACTTTCCAA-G---G 192 Query 291 aaaaacaaaaacaaaaCGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACATAG 350 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 193 --AAACAAAAACAGAACGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACGTAG 250 Query 351 GATATCAACGCATGGACTTCCCATCTTTTAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 410 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 251 GATATCAACGCATGGACTTCCCCTCTTTAAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 310 Query 411 CACA-TGGTGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 469 || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 CA-ATTGGGGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 369 Query 470 GATATGGAAGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 529 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 GATATGGATGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 429 Query 530 GTGGCTATAATTCTCGCTCACAATGGGCCAACAGGTCTTGGTTGGCAAGCAGAGGATATA 589 |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 430 GTGGCTATAATTCTTGCTCATAATGGGCCAACAGGTCTTGGTTCTCAAGCAGAGGATATA 489 Query 590 TGTGGAAAAGACTGGGGGGCTGAAGGCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 649 |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 490 TGTGGAAAAGACTGGGTGGATGAAGCCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 549 Query 650 ATACGACAGTTGAAGGAGACGACTAAGTTGTCGATTCCTTTAGTTGTGTTTGGGCACATG 709 ||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||| Sbjct 550 ATACGACAGTTGAAGGAGACGACGAAGTTGTCGGTTCCTTTAGTAGTGTTTGGACACATG 609 Query 710 CATAAGGAGCTGCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATAGTGACAAC 769 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 610 CATAAGGAGCTTCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATGGTGATAAC 669 Query 770 CAGACTGTGTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGAAAAGAGGA 829 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 670 CAGACTGTTTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGGAAAGAGGA 729 Query 830 GCAGCAGAGTCTGAGAGTGGTGGCACAACAAGAGCTTTCACATTGGTGGAGATTTTAGAT 889 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 730 GCAGCAGAGTCTGAGAGTGGTGGCACAACCAGAGCTTTCACATTGGTAGAGATTTTAGAT 789 Query 890 GGGAAAATCAAGAAAATAGCAGAAATTTGGGTACATGTAAATGGAAGTATGGCTAAGATT 949 ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| Sbjct 790 GGGAAAATCAAGAAAATTGCAGAAATTTGGGTACATGTTAATGGAAGTAGGGCTAAGATT 849 Query 950 GTGGAGGAAAATACTTTGTTTGAAGATGTAACCT-GATTTGA 990 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 850 GTGGAGGAAAATACATTGTTTGAAGATGTAACCTTGATTTGA 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5