BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58200.2
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917537 jgi|Araly1|917537|Al_scaffold_0008_2288 1254 0.0
> Ahg917537 jgi|Araly1|917537|Al_scaffold_0008_2288
Length=891
Score = 1254 bits (679), Expect = 0.0
Identities = 776/822 (94%), Gaps = 9/822 (1%)
Strand=Plus/Plus
Query 171 CAGGTGATTTTGGTGAAGAAAACGTCCCACTGGTTCAAAGTGTTGCCGCTCTTACTTTCC 230
|||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 77 CAGGTGATTTTGGTGAGGAAAACGTCCCGCTTGTTCAAAGCGTTGCCGCTCTTACTTTCC 136
Query 231 CTAAAGCAGTCATATTGGGGAATCATGATGCCTGGTTCACCCAAGATTTTCCAAGGAAAG 290
|||||||||| |||||||| |||||||||||||||||||||| || ||||||| | |
Sbjct 137 CTAAAGCAGTTATATTGGGAAATCATGATGCCTGGTTCACCCTTGACTTTCCAA-G---G 192
Query 291 aaaaacaaaaacaaaaCGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACATAG 350
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 193 --AAACAAAAACAGAACGGTGTTCAAATGCAACTCGATATCCTTGGTGACGAGCACGTAG 250
Query 351 GATATCAACGCATGGACTTCCCATCTTTTAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 410
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 251 GATATCAACGCATGGACTTCCCCTCTTTAAAGCTCAGTATTGTTGGTGGTCGACCCTTTT 310
Query 411 CACA-TGGTGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 469
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CA-ATTGGGGGGGATCGATTGTTTCGGAAAAATCTGCTTGTCCAGAGGTATGGAGTTCAT 369
Query 470 GATATGGAAGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 529
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GATATGGATGCCAGTGCTGGGAGTATTTGTCGAGCTGCACATGGAACACCGGAAGATCAC 429
Query 530 GTGGCTATAATTCTCGCTCACAATGGGCCAACAGGTCTTGGTTGGCAAGCAGAGGATATA 589
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 430 GTGGCTATAATTCTTGCTCATAATGGGCCAACAGGTCTTGGTTCTCAAGCAGAGGATATA 489
Query 590 TGTGGAAAAGACTGGGGGGCTGAAGGCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 649
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 490 TGTGGAAAAGACTGGGTGGATGAAGCCGGTGACCATGGTGATCCAGATCTAGAGCAGGCG 549
Query 650 ATACGACAGTTGAAGGAGACGACTAAGTTGTCGATTCCTTTAGTTGTGTTTGGGCACATG 709
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||
Sbjct 550 ATACGACAGTTGAAGGAGACGACGAAGTTGTCGGTTCCTTTAGTAGTGTTTGGACACATG 609
Query 710 CATAAGGAGCTGCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATAGTGACAAC 769
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 610 CATAAGGAGCTTCAACGGGGGAAAGGAAATCGGAAAATGGTAGTGCAAGATGGTGATAAC 669
Query 770 CAGACTGTGTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGAAAAGAGGA 829
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 670 CAGACTGTTTATGTGAACGGTGCAATAGTTCCAAGGGTTAAAGAGGCAAAGGAAAGAGGA 729
Query 830 GCAGCAGAGTCTGAGAGTGGTGGCACAACAAGAGCTTTCACATTGGTGGAGATTTTAGAT 889
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 730 GCAGCAGAGTCTGAGAGTGGTGGCACAACCAGAGCTTTCACATTGGTAGAGATTTTAGAT 789
Query 890 GGGAAAATCAAGAAAATAGCAGAAATTTGGGTACATGTAAATGGAAGTATGGCTAAGATT 949
||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 790 GGGAAAATCAAGAAAATTGCAGAAATTTGGGTACATGTTAATGGAAGTAGGGCTAAGATT 849
Query 950 GTGGAGGAAAATACTTTGTTTGAAGATGTAACCT-GATTTGA 990
|||||||||||||| ||||||||||||||||||| |||||||
Sbjct 850 GTGGAGGAAAATACATTGTTTGAAGATGTAACCTTGATTTGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5