BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58210.3
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495927 jgi|Araly1|495927|fgenesh2_kg.8__1743__AT5G58210.2 651 0.0
> Ahg495927 jgi|Araly1|495927|fgenesh2_kg.8__1743__AT5G58210.2
Length=1476
Score = 651 bits (352), Expect = 0.0
Identities = 480/540 (89%), Gaps = 16/540 (3%)
Strand=Plus/Plus
Query 1105 GAGACTGATGAA-GAGAGG-AACTTGACGCACTTAGGCAATCAAGAGTCAAAAGCAGACC 1162
|||||||| ||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 945 GAGACTGA-GAAGGAG-GGAAACTTGACGCACTTAGGTAATCAAGAGTCAAAAGCAGACC 1002
Query 1163 ATCTTGAAGGAGCTGATGTTTCAGCAGATGTTGTGCCTACTGAGACCAGACAAATTTCAG 1222
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1003 ATCTTGAAGGAGCTGCTGTTTCAGCAGATTTTGTGCCTACTGAGACCAGACAAGTTTCAG 1062
Query 1223 AGACAGGAGCCGGTGAGGTGAAAGAGACGGAAACTGGTGAGGTGAAAGAAAGGTCAAGTT 1282
|| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1063 AGGCAGGAGCCGGTGAGGTGAAAGAGACGGAAGCTGGTGAGGTGAAAGAAACATCAAGTG 1122
Query 1283 CGTGGAGCAACATAATGTCATTTGCGAAAGAATTTGCGAACTTTTGGAGATGAGGGTAGA 1342
| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||
Sbjct 1123 CATGGAGCAACATAATGTCATTTGCAAAAGAATTTACGAACTTTTGGAGAAAAATGTAGA 1182
Query 1343 TATAGCCAGG-GAGCTTTAGACACGCTCAGGAAG-GGTAGGTAGAGGTGTGTAAAGTATA 1400
||||||| || |||||||||| |||||| ||| | ||||||||||||||||| ||||| |
Sbjct 1183 TATAGCC-GGAGAGCTTTAGATACGCTCTGGAGGAGGTAGGTAGAGGTGTGTGAAGTACA 1241
Query 1401 CCAGTAGAAGCTGTTTTGTTTTGAC-ATTTTGCGCAAAGGTTTGGAATCGACCAAGATGT 1459
| |||||| ||| ||||| |||||| |||||||| |||||||||| ||| |||||||||
Sbjct 1242 CTAGTAGA-GCTCTTTTGGTTTGACCATTTTGCGTAAAGGTTTGGTATCTCCCAAGATGT 1300
Query 1460 CTTAA-TCTAGACTATTATTGTCCTGCTGGCTATGAGTCTA--GATTAAAACACACAACA 1516
||||| |||| |||||||||||||||||||| ||||||||| |||||||||||| | ||
Sbjct 1301 CTTAAATCTATACTATTATTGTCCTGCTGGCAATGAGTCTATAGATTAAAACACA-A-CA 1358
Query 1517 GTTTTAGAGGCTTGTTTTGTGATCGACCATTTTGTACAAAGGTATAGAATCTCCCAAGAT 1576
||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1359 ATTTTAGAGGCTAGTTTTGTGATTGACCATTTTGTACAAACGTTTAGAATCTCCCAAGAT 1418
Query 1577 GTTTAACATGGTAATCTATACTATCGTTGTCCTACTCACAATGAGTCTAGATCAAAGCTC 1636
|||||||||||||||| |||| || ||| |||||||||||| | |||||||||||
Sbjct 1419 GTTTAACATGGTAATCAATACAATTATTGGAG--CTCACAATGAGTATGGATCAAAGCTC 1476
Score = 649 bits (351), Expect = 0.0
Identities = 458/506 (91%), Gaps = 21/506 (4%)
Strand=Plus/Plus
Query 160 TGACGTAGAAGTAGCATACTCTCGAGTGCAGTGATGATTCTGAAGCAGCTGAAACAATTT 219
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TGACGTACAAGTAGCATACTCTCGAGTGCAGTGATGATTCTGAAGCAGCTGAAACAATTT 212
Query 220 ACCTTGTCTGCTACTCGCAGAAATGCTGTTTTCAAAACTGATGTTAAACGGCTTGCAAGG 279
||||| |||||||| |||||||| || | ||||||||||||||||||||||
Sbjct 213 ACCTTTTCTGCTACACGCAGAAA---TG---T------TGATGTTAAACGGCTTGCAAGG 260
Query 280 TTCTATGGCTCTCCTGCTGTTTGCGAATCTTTAACAACATCTAAAA-TTCCCAAAAGACT 338
|||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||
Sbjct 261 TTCTATGGCTCTCCTGCTGTTTGCGAATCTTTAACAACCTCTAAAGCTTAC-AAAAGACT 319
Query 339 CTCAAAAGATGATCGGCGAGCTTTGGTGGAGTCCTTTGTCAACGAATACAGAGC-AACTA 397
|||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 320 GTCAAGAGATGATCGGCGAGCTTTGGTGGAGTCTTTTGTCAACGAATACAGAGCGAA-TA 378
Query 398 ATGCTGGTAGATTCCCTTCATTG-GATGCTACTCACAAGCAAGTGGGAGGCTCTTATTAC 456
||||||||||||||||||||||| | | |||||| |||| ||||||||||| |||||||
Sbjct 379 ATGCTGGTAGATTCCCTTCATTGAGTT-CTACTCGCAAGGAAGTGGGAGGCGGTTATTAC 437
Query 457 ATTGTCAGGGACATCTTTCAAGAGCTGAAACTCAAACCAAAAGCACATATGCCAATCGTA 516
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 GTTGTCAGGGAAATCTTTCAAGAGCTGAAACTCAAACCAAAAGCACCTATGCCAATCGTT 497
Query 517 GCTAAAGCCCTCTCAGAAGTCTCTTCTTCTGTACCAGGTGATGCTTCCTCACACTCCTCT 576
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 498 GCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATGTGATGCTTCCTCACACTTTTCT 557
Query 577 CCAGCACCTGTGCCAACCGTTGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCA 636
|||||||||||||||| ||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 558 CCAGCACCTGTGCCAATCGT--A-GCTAAACCCCTCTCAGAAGTCCCTCCTTCTGTACCA 614
Query 637 GCTGATGCTTCCTCACACTTGTCTCC 662
| |||||||||||||||||| |||||
Sbjct 615 GATGATGCTTCCTCACACTTCTCTCC 640
Score = 396 bits (214), Expect = 3e-109
Identities = 273/300 (91%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 747 AGCACCTGTGCCAATCGTAGAAGC-AGAAGCCCTCTCAGTAGTCTCTCCTTCTGTACCA- 804
||||||| |||||||||| || | |||||||||||| |||||||||||||||||||
Sbjct 479 AGCACCTATGCCAATCGT---TGCTA-AAGCCCTCTCAGAAGTCTCTCCTTCTGTACCAT 534
Query 805 GCTGATACTTCCTCACACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGCTAAAACCCTC 864
| |||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 535 G-TGATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGT---AGCTAAACCCCTC 590
Query 865 TCAGAAGTCTCTCCCTCTGTACCAGATGATGCTTCCTCACACTTCTCTCCTGTGGTTGTT 924
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCAGAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCCTGTGGTTGTT 650
Query 925 GAACCTGAGTTTCAAGCTGGCAGTGTGGATATTGAGATAGGAAGTGAGCAGAGGCCGGAT 984
||||||||| |||||||||||||| ||| |||||||| || || ||||||||||| ||||
Sbjct 651 GAACCTGAGATTCAAGCTGGCAGTCTGGGTATTGAGACAGTAAATGAGCAGAGGCAGGAT 710
Query 985 ATAATAGATACTTCTCACTCTAATTCTGATGATGAAAGTAATTTCCAGGGCAACAACCTT 1044
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 711 ATAATAGATACTTCTCACTCTATTTCTGATGATGAAAGTAATCTCCAGGGCAACAACCTT 770
Score = 206 bits (111), Expect = 6e-52
Identities = 151/169 (89%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 579 AGCACCTGTGCCAACCGTTGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCA-G 637
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 479 AGCACCTATGCCAATCGTT---GCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATG 535
Query 638 CTGATGCTTCCTCACACTTGTCTCCATCACCTGTGCCAATCGTAGAAGCTAAAGCCCTCT 697
|||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||
Sbjct 536 -TGATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGTAG---CTAAACCCCTCT 591
Query 698 CAGAAGTCTCTCCTTCCGTACCAGCTGATACTTCCTCGCACTTCTCTCC 746
|||||||| ||||||| ||||||| |||| ||||||| |||||||||||
Sbjct 592 CAGAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCC 640
Score = 185 bits (100), Expect = 7e-46
Identities = 146/167 (87%), Gaps = 8/167 (5%)
Strand=Plus/Plus
Query 665 CACCTGTGCCAATCGTAGAAGCTAAAGCCCTCTCAGAAGTCTCTCCTTCCGTACCA-GCT 723
||||| |||||||||| ||||||||||||||||||||||||||||| |||||| | |
Sbjct 481 CACCTATGCCAATCGT---TGCTAAAGCCCTCTCAGAAGTCTCTCCTTCTGTACCATG-T 536
Query 724 GATACTTCCTCGCACTTCTCTCCAGCACCTGTGCCAATCGTAGAAGCAGAAGCCCTCTCA 783
||| ||||||| ||||| ||||||||||||||||||||||||| | || ||||||||
Sbjct 537 GATGCTTCCTCACACTTTTCTCCAGCACCTGTGCCAATCGTAGCT--A-AACCCCTCTCA 593
Query 784 GTAGTCTCTCCTTCTGTACCAGCTGATACTTCCTCACACTTCTCTCC 830
| |||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 594 GAAGTCCCTCCTTCTGTACCAGATGATGCTTCCTCACACTTCTCTCC 640
Score = 171 bits (92), Expect = 2e-41
Identities = 113/122 (93%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 38 GAACCCTACTTGTTGTTCTTCCTTCTTAATCGCTCTCCGGTCGGCGCCGTGTTTTTCGCG 97
||||||||||||||| ||||||||| |||||||||||||| |||||||| |||| |||
Sbjct 1 GAACCCTACTTGTTG---TTCCTTCTTCATCGCTCTCCGGTCTGCGCCGTG-TTTT-GCG 55
Query 98 TCTCTCTCAAACTCCAATTCTCTATTTTCCGACCAACAGAGAGTAGCGACTGGTTATTTT 157
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 56 TCTCTCTCAAACTCCGATTCTCTATTTTCCGACCAACAGAGAGTAGCGACTGGTTCTTTT 115
Query 158 CT 159
||
Sbjct 116 CT 117
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 1108 ACTGATGAAGAGAGG-AACTTGACGCACTTAGGCAATCAAGAGTCAAAAGCAGACCATCT 1166
||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 ACTGAGGAAGAG-GGAAACTTGACGCACTTAGGTAATCAAGAGTCAAAAGCAGACCATCT 829
Query 1167 TGAAGGAGCTG 1177
|||||||||||
Sbjct 830 TGAAGGAGCTG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5