BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58220.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495929 jgi|Araly1|495929|fgenesh2_kg.8__1745__AT5G58220.1 1517 0.0
> Ahg495929 jgi|Araly1|495929|fgenesh2_kg.8__1745__AT5G58220.1
Length=980
Score = 1517 bits (821), Expect = 0.0
Identities = 929/982 (95%), Gaps = 4/982 (0%)
Strand=Plus/Plus
Query 17 AAAAATGGCGATGGAGATCGGAGAAGATGAATGGAAGGTTTGCTGTGGAAGCTCCGAATT 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGGCGATGGAGATCGGAGAAGACGAATGGAAGGTTTGCTGTGGAAGCTCCGAATT 60
Query 77 CGCGAAGCAGATGTCTACGTCTGGACCGTTAACTTCTCAAGAAGCAATATATACTGCAAG 136
|||||||| |||| | |||||| ||||||||||| |||||||||| | ||||| ||
Sbjct 61 CGCGAAGCTGATGGAGATGTCTGGTCCGTTAACTTCAGAAGAAGCAATCTGGACTGCCAG 120
Query 137 AGACATCTGGTTCAACCAAGTTAATGTGACAGATTGGCTTGAAGCTTTCTCTGCTCATCC 196
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACATCTGGTTCAACCTAGTTAATGTGACAGATTGGCTTGAAGCTTTCTCTGCTCATCC 180
Query 197 TCAGATTGGGAATACTCCTTCACCTTCTATCAACTCCGATTTTGCTCGTCGGAGCGTATC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGATTGGGAATACTCCTTCACCTTCTATCAACTCCGATTTTGCTCGTCGGAGCGTATC 240
Query 257 AGAACAGTCAACCGCCTTTGCCACAACTTCTGCTTCTGCTTTACAGGAGCTTGCCGAATG 316
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGAACAGTCAACGGCCTTTGCCACAACTTCTGCTTCTGCTTTACAGGAGCTTGCCGATTG 300
Query 317 GAATGTACTTTACAAA-AAGAAGTTTGGCTTTATCTTCATTATTTGCGCTTCTGGCAGGA 375
|||||||| |||||| || ||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 301 GAATGTACGCTACAAACAA-AAGTTTGGCTTTATCTTCATTATCTGCGCCTCTGGTAGGA 359
Query 376 CTCACGCTGAGATGCTCCATGCGTTAAAGGAAAGGTATGAAAATAGGCCAATAGTGGAGC 435
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 360 CTCATGCTGAGATGCTCCATGAGTTAAAGGAAAGGTATGAAAATAGGCCGATAGTGGAGC 419
Query 436 TTGAGATTGCTGCTATGGAACAAATGAAAATAACAGAGCTACGAATGGCAAAGCTGTTCT 495
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 420 TTGAGAATGCTGCTATGGAACAAATGAAAATAACAGAGCTACGAATTGCTAAGCTCTACT 479
Query 496 CCGATAAGGCTAAAGTTATATCAGAAACTGACAGCTCTAGCTCTCCTGTTTCAACAAAAC 555
|||||||||||| |||| |||| |||||||||||||||||||||||| |||| |||||||
Sbjct 480 CCGATAAGGCTAGAGTTGTATCTGAAACTGACAGCTCTAGCTCTCCTATTTCCACAAAAC 539
Query 556 CTCAAGATCGTCTGAGAATCATTGGAGGGCATTTGAATGTTGCAGCTGAAGCAAAAGCTC 615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 CTCAAGATCGTCTGAGAATCATTGGAGGGCATTTGAATGTTGCAGCTGAAGCAAAAACTC 599
Query 616 CCAAGAGAAGTAGGCCACCGATCACGACTCATGTCTTAGACGTCTCACGTGGTGCTCCAG 675
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAAGAGAAGTAGGCCACCAATCACGACTCATGTCTTAGACGTCTCACGTGGTGCTCCAG 659
Query 676 CTGCAGGTGTTGAAGTGCACTTAGAAGTGTGGAGTGGTACTACCGGTCCTTCCTTTGTTC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 CTGCAGGTGTTGAAGTGCACTTAGAAGTGTGGAGTGGTACTACCGGTCCTTCCTTTGGTC 719
Query 736 ATGGAGGTGGTGGGGTCTGGTCCAGTGTGGGCACATCAGCTACTGAT-AGAGATGGGCGC 794
||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 720 ATGGAGGTGGTGGTGTCTGGTCCAGTGTGGGCACTTCAGCTACTGATCA-AGATGGGCGC 778
Query 795 AGTGGGCCACTGATGGATTTGGTTGACGCTTTGAATCCAGGGACATATAGGATTAGCTTC 854
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 779 AGTGGGCCACTGATGGATTTGGTTGAGGCTTTGAATCCAGGGACATATAGAATAAGCTTC 838
Query 855 GACACTGCAAAGTATTCCCCAGGCTGCTTCTTTCCCTATGTTTCCATTGTATTTCAGGTT 914
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 AACACTGCAAAGTATTGCCCAGGCTGCTTCTTTCCCTATGTTTCGATTGTATTTCAGGTT 898
Query 915 ACAGAATCACAGAAATGGGAGCATTTCCATGTCCCACTGTTGCTTGCACCTTTTTCTTTC 974
|||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 899 ACAGAATCTCAGAAATGGGAGCATTTCCATGTCCCACTGTTGCTTTCACCATTTTCTTTC 958
Query 975 TCCACATACCGTGGGAGCTAGA 996
|||||||||||||||||||||
Sbjct 959 ACCACATACCGTGGGAGCTAGA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5