BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G58240.1

Length=818
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332111 jgi|Araly1|332111|fgenesh1_pm.C_scaffold_8001454           817    0.0  


> Ahg332111 jgi|Araly1|332111|fgenesh1_pm.C_scaffold_8001454
Length=567

 Score =  817 bits (442),  Expect = 0.0
 Identities = 466/478 (97%), Gaps = 0/478 (0%)
 Strand=Plus/Plus

Query  106  GTCTACTTGTTCTTCGTACGCATTTGGGCCGTACAAAATCGATCCCCGTGAAGTGTTCTA  165
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  90   GTCTACTTGTTCTTCGTACGCATTTGGGCCTTACAAAATCGATCCTCGTGAAGTGTTCTA  149

Query  166  CGCAACGCCTCTCTCTTATGCCATGGTTAATCTCCGTCCGCTTCTTCCTGCACATGTTCT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  150  CGCAACGCCTCTCTCTTATGCCATGGTTAATCTCCGTCCGCTTCTTCCTGGTCATGTTCT  209

Query  226  TGTCTGCCCGAGACGCCTTGTGCCACGATTTACTGATCTTACAGCTGATGAGACCAGTGA  285
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  TGTCTGCCCGAGGCGCCTTGTGCCACGATTTACTGATCTTACAGCTGATGAGACCAGTGA  269

Query  286  CCTGTGGCTTACTGCTCAGAAGGTTGGCTCTAAGCTTGAGACCTTCCATAATGCGTCTTC  345
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  TCTGTGGCTTACTGCTCAGAAGGTTGGCTCTAAGCTTGAGACCTTCCATAATGCGTCTTC  329

Query  346  TCTCACATTAGCCATCCAAGATGGCCCTCAAGCGGGACAGACTGTTCCCCATGTACACAT  405
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  330  TCTCACATTAGCTATCCAAGATGGCCCTCAAGCGGGACAGACTGTTCCCCATGTACACAT  389

Query  406  TCATATCTTGCCTCGTAAAGGTGGTGACTTTGAGAAGAATGATGAAATCTATGATGCTCT  465
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  TCACATCTTGCCTCGTAAAGGTGGTGACTTTGAGAAGAATGATGAAATCTATGATGCTCT  449

Query  466  TGATGAGAAGGAGAAGGAACTGAAGCAGAAGCTTGATCTAGATAAAGACCGGGTTGATAG  525
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  TGATGACAAGGAGAAGGAACTGAAGCAGAAGCTTGATCTAGATAAAGACCGGGTTGATAG  509

Query  526  GAGCATTCAGGAGATGGCTGACGAGGCTTCCCAATACAGATCTCTTTTCGATTGCTAG  583
            | ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  510  GGGCATTCAGGAGATGGCTGACGAGGCTTCCAAATACAGATCTCTTTTTGATTGCTAG  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30231473181


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5