BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58250.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950526 jgi|Araly1|950526|scaffold_802413.1 1055 0.0
> Ahg950526 jgi|Araly1|950526|scaffold_802413.1
Length=673
Score = 1055 bits (571), Expect = 0.0
Identities = 646/681 (95%), Gaps = 9/681 (1%)
Strand=Plus/Plus
Query 61 TCAACAGACTCTAATCAGCAGCAAATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 120
|||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAAAGACTCTAAT---CAGC-AATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 56
Query 121 CCGCCTACCGCCGCCGCTTGCCGTACGAAACCCTTTCTCATCTCCTCTTCCTTTCCCAAG 180
|||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||||||
Sbjct 57 CCGCCTACCGCCGCCGCTTGCCGTCCAAAACCCTTTCTCGTCTCCTCCTCCCTTCCCAAG 116
Query 181 CAGACAAAGAAACTCCATCTCTCTTCGCCTTCTCTGTCTCTACCATCATCACATTTCTCC 240
|||||||||||||||||||| | | |||| |||||||||||||| |||||||||||||||
Sbjct 117 CAGACAAAGAAACTCCATCTTTGTCCGCCGTCTCTGTCTCTACCTTCATCACATTTCTCC 176
Query 241 TCCTCTTTCAAAACCGCAGCTACCTCCATCGAGCAACAGTCTTCTGTTAACAAGGGAGAG 300
|||||||||||||||||||| |||||| ||||||||||| || | |||||||||||||
Sbjct 177 TCCTCTTTCAAAACCGCAGCCACCTCCGTCGAGCAACAG---TCGGATAACAAGGGAGAG 233
Query 301 AGCACCAAGTACCATTTCCTGGTAGCAAACGCTAAATTCATGCTTGACGAAGAGGAGCAC 360
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 234 AGCATCAAGTACCATTTCCTGGTAGCAAACGCAAAATTCATGCTTGACGAAGAGGAACAC 293
Query 361 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACT-TCGGTGAGCGTGAATTAGTGCAAGA 419
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 294 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACTAT-GGTGAGCGTGACTTAGTGCAAGA 352
Query 420 CTTCTGGCTTGTCATTGAGCCTAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 479
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTTTTGGCTTGTGATTGAGCCCAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 412
Query 480 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCACCTGGATCACGTTTATGAAGTT 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 413 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCTCCTGGATCACGTTTATGAAGTT 472
Query 540 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACCTCTCTTGATGAAGCTTTGGC 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACATCTCTTGATGAAGCTTTGGC 532
Query 600 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 592
Query 660 GTATGAACCTGGATGGTGGGATACCTTCTTGCCTAAAGTAACCCAAGAATCTGCAGTATA 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 593 GTATGAACCTGGATGGTGGGATACCTTCTTGCCCAAAGTAACCCAAGAATCTGCAGTATA 652
Query 720 GAACTTTGCTTTTTGTCTTGT 740
||||||||| |||||||||||
Sbjct 653 GAACTTTGCCTTTTGTCTTGT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5