BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58260.1
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495935 jgi|Araly1|495935|fgenesh2_kg.8__1751__AT5G58260.1 1175 0.0
> Ahg495935 jgi|Araly1|495935|fgenesh2_kg.8__1751__AT5G58260.1
Length=828
Score = 1175 bits (636), Expect = 0.0
Identities = 768/832 (92%), Gaps = 7/832 (1%)
Strand=Plus/Plus
Query 1 ATTGTTAGTAAAGAAATGGGAAGCCGTGCAATATGTATACAACGTGTGGCACCACCGTGT 60
||||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1 ATTGTTAGTGAAGAAATGGGAAGCCGTGCCGTATGTATACAACGTGTGGCGCCGCCGTGT 60
Query 61 TTTGAAGCCTCGCAAGTGAAGAAGATCAAAACAGTTGGTTCCTTTTTGGTGAATACTAGG 120
|||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 61 TTTGAAGCTTCGCAAGTGAAGAAGATCAAAACTGTTGGTCCCTTTTTTGTGAATACTAGG 120
Query 121 AGTAAGAGAAGAAGAAGCACTGGTGTGAA-ATGTAGCAGCATAGCTGACTACATCGGAGG 179
||||||||||||||||||| ||| || || ||||||||||||||||||||| ||||||||
Sbjct 121 AGTAAGAGAAGAAGAAGCAATGGCGT-AAGATGTAGCAGCATAGCTGACTATATCGGAGG 179
Query 180 TGACTTGGTGAAGCCGGACATCGGACAATGGCTTCAAGACGTGGAAGAACACAAGGCAAT 239
|||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 180 TGACCTGGTGAAGCCGGACATCGGACAATGGCTTCAAGATGTGGAAGAGCACAAGGCAAT 239
Query 240 CGCCATTTACGCTCCTCATGAGGGTGGTTACGAAGGTCGTTATCTTAACCGTCTCAAAAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCCATTTACGCTCCTCATGAGGGTGGTTACGAAGGTCGTTATCTTAACCGTCTCAAAAT 299
Query 300 GCAGGGCTACTACTTTCTTGACATCTCTGCTCGTGGCCTTGGTGACCCTGAGACTACCCT 359
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 300 GCAAGGCTACTACTTTCTTGACATCTCTGCTCGGGGCCTGGGTGACCCTGAGACTACTCT 359
Query 360 TCTCAAGAACTACCCTGTTTGCCCTGCTCATCTTGGGAAACAACCTATAGCAAGATGGTA 419
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 CCTCAAGAACTACCCTGTTTGCCCTGCTCATCTTGGCAAACAACCTATAGCAAGATGGTA 419
Query 420 TTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGT 479
||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 420 CTATCCACCAGAGGTTGATTACAGGCTCTCTGCTCTTCCCCCTAGTGCCAAAGGTCTTGT 479
Query 480 TGTATGGGTCCTCGAAGCAAAGGTCCTCTCAAAATCGGAGCTTCAATTTCTCGCTTTACT 539
||||||||||||||||||||||||||||| || | || || |||||||||||||| ||
Sbjct 480 CGTATGGGTCCTCGAAGCAAAGGTCCTCTCCAAGGCTGAACTCCAATTTCTCGCTTTGCT 539
Query 540 TCCCTCTCTTCGTCCTAACGTCAGGGTTATTGCTGAATGTGGCAACTGGAGAAAGTTCGT 599
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 540 TCCCTCTCTTCGTCCTAATGTCCGGGTTATTGCTGAATGTGGCAACTGGAGAAAGTTTGT 599
Query 600 GTGGAAGCCTCTAGCAGAAATTGCAAATCTAGCTGCACAAGAGTAACTTAATGGCACAAG 659
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 600 GTGGAAGCCTCTAGCAGAAATTGCAAATTTAGCTGCACAAGAGTAACCTAATGGCACCAG 659
Query 660 TGGAGCT-ACCAGTGTATAGTTTTTCATGAATGCATCTCCCGCAAGTGTAGCAATACTCA 718
| || || ||| |||||||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct 660 TAGAACTTACC-GTGTATAGTTTT-CATGAATACATCTTCTGCAAGTGTAGCAATACTCA 717
Query 719 TCCCATAGTAAAAGTTAAAATCTGTATTTGTAACTTGGTAGTATATTCCCATGGAGTAGT 778
|| |||| ||||| || |||| | | ||||| |||||||| ||||||||||||||||| |
Sbjct 718 TCACATATTAAAATTTGAAATATATGTTTGTTACTTGGTAATATATTCCCATGGAGTAAT 777
Query 779 TAAAGATAATTTCTGACTCTGCTTTGTCACAAATAAAAGTA-TGTATAATCA 829
||| || ||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 778 TAAGGACAATTTCTGACTCTGCTTTGTCACAAATGAAAGTACT-TATAATCA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31222669023
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5