BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58270.1
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495937 jgi|Araly1|495937|fgenesh2_kg.8__1753__AT5G58270.1 3814 0.0
Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1 1397 0.0
> Ahg495937 jgi|Araly1|495937|fgenesh2_kg.8__1753__AT5G58270.1
Length=2340
Score = 3814 bits (2065), Expect = 0.0
Identities = 2251/2342 (96%), Gaps = 8/2342 (0%)
Strand=Plus/Plus
Query 4 GTGAAACTTTCGGAGAAGAAGGGATGTCGAGAGGATCTCGATTCGTTAGGGCTCCTGGGC 63
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GTGAAACTTTCGGACAAGAAGGGATGTCGAGAGGATCTCGACTCGTTAGGGCTCCTGGGC 60
Query 64 TCTTACTCTGTCGCGTTAATCTTCAACCTCAACCCAAAATCCCATCTTTTTCCTACAGTC 123
||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTACTATGTCGCGCTAATCTTCACCCTCAACCCAAAATCCCATCTTTTTCCTACAGTC 120
Query 124 TTCGCTCTGATTATCGTCTTCATAATGGTTTCTCCAATTACATCAGACGTAACTCAATTC 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGCTCTGATTATCGTCCTCATAATGGTTTCTCCAATTACATCAGACGTAACTCAATTC 180
Query 184 GAACATCTCCGGTTATCAATGCCTTCCTCTCAGATAACTCACCATCCCCGTCACCATCAC 243
|||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 181 GAACATCTCCCGTTATCAATGCCTTCCTCTCCGATCACTCACCATCCCCATCACCATCAC 240
Query 244 CATCCCCAATTCGTTTTGTTCAACGGAGTTCAATGCTTAATGGTCGTCTCTTCTCGACTT 303
|||||||||||||||| |||||||||||||| |||||||||| ||||| || |||||||
Sbjct 241 CATCCCCAATTCGTTTCGTTCAACGGAGTTCCGTGCTTAATGGGCGTCTTTTTTCGACTT 300
Query 304 CTACTCCCAATCCAGACCAAACCA-CCACCAAGACTAAGGAAATCAAGACAACCTCGTCG 362
||||||| ||||| |||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 301 CTACTCCAAATCCCGACC-AAGCAGCCACCAAGTCTAAGGAAATCAAGACAACCTCGTCG 359
Query 363 GATTCAGACTCAGCTATGGCTGACATGAAGATTCTCCGTACGCTTGCTGGCTATTTGTGG 422
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GATTCAGACTCGGCTATGGCTGACATGAAGATTCTCCGCACGCTTGCTGGCTATTTGTGG 419
Query 423 ATGAGAGACAATCCAGAATTCCGTTTCAGGGTCATCGCTGCTTTGGGTTTTCTCGTGGGT 482
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 420 ATGAGAGACAATCCAGAATTCCGTTTGAGGGTCATCGCTGCTTTGGGTTTTCTAGTGGGT 479
Query 483 GCTAAGGTCTTGAATGTCCAAGTCCCTTTCCTCTTCAAATTAGCTGTTGATTGGCTTGCT 542
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTAAGGTTTTGAATGTCCAAGTCCCTTTCCTCTTCAAATTAGCTGTTGATTGGCTTGCT 539
Query 543 TCAGCTACCGGTACTGGAGCCTCACTTACCACCTTCGCTGCTACAAACCCAACTCTTCTT 602
||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 540 TCAGCCACCGGTACAGGAGCCTCTCTGACCACCTTCGCTGCTACAAACCCTACTCTTCTT 599
Query 603 ACTGTTTTTGCTACTCCTGCTGCTGTTCTCATTGGATACGGGATTGCTCGGACGGGTTCT 662
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct 600 ACTGTTTTTGCTACTCCTGCTGCTGTCCTCATTGGATATGGCATTGCTCGGACGGGATCT 659
Query 663 TCTGCTTTTAATGAACTTCGTACTGCTGTGTTCTCTAAGGTAGCTCTCCGAACAATACGA 722
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TCTGCTTTTAATGAACTTCGTACTGCTGTGTTCTCTAAGGTGGCTCTCCGAACAATACGA 719
Query 723 TCTGTTTCTAGAAAGGTGTTCTCACATTTACATGATCTTGACCTTCGTTACCACCTAAGT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTGTTTCTAGAAAGGTGTTCTCACATTTACATGATCTTGACCTTCGTTACCACCTAAGT 779
Query 783 CGAGAAACAGGCGGCTTGAACAGGATTATTGATCGTGGTAGCCGTGCAATAAATTTTATC 842
||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 780 CGAGAAACAGGTGCCTTGAACAGAATTATTGATCGTGGTAGCCGTGCGATAAATTTTATC 839
Query 843 CTCTCAGCTATGGTTTTCAATGTTGTTCCTACCATATTGGAGATATCTATGGTATCAGGT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCTCAGCTATGGTTTTCAATGTTGTTCCTACCATATTGGAGATATCTATGGTATCAGGT 899
Query 903 ATACTGGCATACAAGTTTGGAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCA 962
||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 900 ATACTAGCATACAAGTTCGGAGCTGCTTTTGCCTGGATTACTTCCCTCTCTGTTGGATCA 959
Query 963 TATATCGTTTTCACATTAGCTGTGACACAGTGGCGAACCAAGTTTAGAAAGGCTATGAAC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATATCGTTTTCACATTAGCTGTGACACAGTGGCGAACCAAGTTTAGAAAGGCTATGAAC 1019
Query 1023 AAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGACTGTC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAGCTGATAATGATGCTAGCACAAGGGCCATTGATTCTCTGATAAATTATGAGACTGTC 1079
Query 1083 AAATATTTTAACAATGAAGGTTATGAGGCTGAAAAGTATGACCAGTTCCTGAAAAAATAT 1142
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 AAATATTTTAACAATGAAGGTTATGAAGCTGAAAAGTATGACCAGTTCCTGAAAAAATAT 1139
Query 1143 GAAGATGCTGCCCTGCAAACTCAAAGAAGTCTTGCTTTCTTAAACTTTGGACAAAGTATC 1202
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1140 GAAGATGCTGCCCTGCAAACTCAAAGAAGTCTTGCTTTTTTAAACTTTGGACAAAGTATC 1199
Query 1203 ATATTTAGTACAGCTTTATCAACAGCAATGGTGTTGTGCTCTCAGGGTATCATGAATGGC 1262
||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 ATATTTAGTACAGCTCTGTCAACAGCAATGGTGTTGTGCTCTCAGGGCATCATGAATGGC 1259
Query 1263 CAGATGACAGTCGGTGATTTGGTTATGGTGAATGGACTTCTCTTTCAGCTGTCTCTTCCT 1322
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 CAGATGACAGTCGGTGACTTGGTTATGGTGAATGGACTTCTCTTTCAGTTGTCTCTTCCT 1319
Query 1323 CTAAATTTTTTGGGTAGTGTTTACCGTGAAACAATTCAGAGCCTTGTGGACATGAAATCA 1382
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 CTAAACTTTTTGGGTAGTGTTTACCGTGAAACCATTCAGAGCCTTGTGGACATGAAATCA 1379
Query 1383 ATGTTCCAGTTGCTAGAGGAGAAATCTGACATCACAAATACA-AGTGACGCAAAGCCTCT 1441
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1380 ATGTTCCAGTTGCTAGAGGAGAAATCTGACATCACAAATACAGA-TGACGCAAAGCCTCT 1438
Query 1442 TGTACTGAAAGGTGGAAACATTGAGTTTGAAAATGTACACTTCAGTTACCTTCCAGAGAG 1501
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGTACTGAAAGGTGGAAGCATTGAGTTTGAAAATGTACACTTCAGTTACCTTCCAGAGAG 1498
Query 1502 AAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGG 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGG 1558
Query 1562 TACTAGCGGGAGCGGCAAGTCAACAATTCTTAGGATGCTATTCAGATTCTTCGACACAGA 1621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1559 TACTAGCGGGAGCGGCAAGTCAACAATTCTTAGAATGCTATTCAGATTCTTCGACACAGA 1618
Query 1622 TTCCGGAAATATAAGGATTGACGGGCAAGATATAAAGGAAGTGAGACTAGATAGCCTCCG 1681
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTCCGGAAATGTAAGGATTGACGGGCAAGATATAAAGGAAGTGAGACTAGATAGCCTCCG 1678
Query 1682 AAGCTCCATAGGAGTTGTGCCGCAAGATACTGTTCTCTTCAATGACACAATATTTCACAA 1741
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1679 AAGCTCCATAGGAGTTGTGCCCCAAGATACTGTGCTCTTCAATGACACAATATTTCACAA 1738
Query 1742 CATACATTATGGACGTCTCTCAGCTACAGAAGAAGAGGTGTATGAGGCTGCTCGGCGTGC 1801
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1739 CATACATTATGGACGTCTCTCAGCTACAAAAGAAGAGGTGTACGAGGCTGCTCGGCGTGC 1798
Query 1802 TGCAATTCATGAAACAATCAGTAATTTCCCTGATAAATATTCCACGATCGTTGGGGAAAG 1861
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TGCAATTCATGAAACGATCAGTAATTTCCCTGATAAATATTCCACGATCGTTGGGGAAAG 1858
Query 1862 GGGGCTCAAGTTGAGTGGTGGAGAGAAACAAAGAGTGGCACTTGCTCGGACATTTTTGAA 1921
||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1859 GGGCCTCAAGTTAAGTGGTGGAGAGAAACAAAGAGTGGCACTTGCTCGGGCTTTTTTGAA 1918
Query 1922 ATCCCCTGCGATTCTGTTGTGTGATGAGGCAACGAGTGCGCTGGACAGCACAACAGAGGC 1981
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1919 ATCCCCTGCGATTCTGTTGTGTGATGAGGCAACCAGTGCGCTAGACAGCACAACAGAGGC 1978
Query 1982 AGAGATACTGAACGCACTCAAGGCACTAGCGAGTAACAGGACATCTATCTTCATTGCCCA 2041
||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1979 AGAGATACTGAACGCACTCAAGGCACTGGCTAGTAACAGGACATCCATCTTTATTGCCCA 2038
Query 2042 CAGGCTGACCACTGCGATGCAATGTGACGAGATCGTAGTACTGGAAAACGGGAAGGTGGT 2101
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2039 CAGGCTGACCACTGCGATGCAATGTGACGAGATCGTTGTACTGGAAAACGGGAAGGTGGT 2098
Query 2102 GGAACAAGGCCCCCACGACGAGCTATTGGGAAAATCAGGGAGATATGCGCAGCTATGGAC 2161
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2099 GGAACAAGGCCCCCACGACGAGCTATTGGGGAAATCAGGGAGATATGCGCAGCTATGGAC 2158
Query 2162 ACAACAAAACAGCAGCGTGGATATGCTTGATGCAGCTATCAAATTGGAATAGTGAAC--C 2219
||||||||||||||| ||||||||||||||||||||| |||||||||| |||| || |
Sbjct 2159 ACAACAAAACAGCAGTGTGGATATGCTTGATGCAGCTGTCAAATTGGAGTAGTAAAAATC 2218
Query 2220 TCAGAGCCAAATGTGTAAAATTTATATTTATCTCATTGATTTTC-TATGGAGCTTATATA 2278
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2219 TCAGAGCCAAATGTGTAAAATTTATATTTATCTCATTGATTTTTGTATGGAGCTTATATA 2278
Query 2279 GTTAA-TAGAGTCCCAAAGAACACAAAACAAAGGGAATAATAAATAGTGGTGAATGATAT 2337
||||| ||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 2279 GTTAAATAGGGTCCCAAATAACACAAAACATAGGGAATAATAAATAATGGTGAATGATTT 2338
Query 2338 AA 2339
||
Sbjct 2339 AA 2340
> Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1
Length=2107
Score = 1397 bits (756), Expect = 0.0
Identities = 1479/1820 (81%), Gaps = 81/1820 (4%)
Strand=Plus/Plus
Query 390 AAGATTCTCCGTACGCTTGCTGGCTATTTGTGGATGAGAGACAATCCAGAATTCCGTTTC 449
||||| ||||| ||| || | ||||| | ||||||| |||||| |||||| |||| |||
Sbjct 268 AAGATCCTCCGCACGATTTCAAGCTATCTATGGATGAAAGACAACCCAGAACTCCGATTC 327
Query 450 AGGGTCATCGCTGCTTT-GGGTTTTCTCGTGGGTGCTAAGGTCTTGAATGTCCAAGTCCC 508
|| |||||||||||||| | | | ||| | || |||||| |||||||||| ||| | ||
Sbjct 328 AGAGTCATCGCTGCTTTAGCG-TGTCTATTAGGAGCTAAGTTCTTGAATGTTCAATTTCC 386
Query 509 TTTCCTCTTCAAATTAGCTGTTGATTGGCT-TGCTTCAGCTACCGGTACTGGAGCCTCAC 567
||||||||||||| ||||| | |||| || | ||||| | | | | | |||
Sbjct 387 TTTCCTCTTCAAAGTAGCTATCGATTTACTCT-CTTCA--T--C--T--T----CATCA- 432
Query 568 TTACCACCTTCGCTGCTACAAA-CCCAACTCTTCTTACTGTTTTTGCTACTCCTGCTGCT 626
| || |||||| | |||| | | ||||||| ||| ||| ||||||||| || ||
Sbjct 433 --A-CA--ATCGCTGATTCAAATCTTTA-TCTTCTTGCTGCTTTCGCTACTCCTTCTTCT 486
Query 627 GTTCTCATTGGATACGGGATTGCTCGGA-CGGGTTCTTCTGCTTTTAATGAACTTCGTAC 685
||||||||||| || || ||||||| || | || |||||||||||||| || |||||||
Sbjct 487 GTTCTCATTGGTTATGGCATTGCTC-GATCTGGATCTTCTGCTTTTAACGAGCTTCGTAG 545
Query 686 TGCTGTGTTCTCTAAGGTAGCTCTCCGAACAATACGATCTGTTTCTAG-AAAGGTGTTCT 744
|||||| |||||||| ||||||||||| ||||||||||| |||||| | ||| ||| |||
Sbjct 546 TGCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTTCTCGTAAA-GTGCTCT 604
Query 745 CACATTTACATGATCTTGACCTTCGTTACCACCT-AAGTCGAGAAACAGGCGGC-TTGAA 802
| |||||||| |||||||| ||||||||||| | || |||||||||||| || |||||
Sbjct 605 CGCATTTACACGATCTTGATCTTCGTTACCATTTGAA-TCGAGAAACAGG-AGCTTTGAA 662
Query 803 CAGGATTATTGATCGTGGTAGCCGTGCAATAAATTTTATCCTCTCAGCTATGGTTTTCAA 862
|| || ||||||||||| ||||| || || || |||||||||||||||||||||||
Sbjct 663 TAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAGCTATGGTTTTCAA 722
Query 863 TGTTGTTCCTACCATATTGGAGATATCTATGGT-ATCAGGTATACTGGCATACAAGTTTG 921
||||||||| || || ||||||||||||||||| | |||||||| | |||||||| ||||
Sbjct 723 TGTTGTTCCAACGATCTTGGAGATATCTATGGTCA-CAGGTATATTAGCATACAATTTTG 781
Query 922 GAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAG 981
|| ||| |||||| | ||| |||||||| |||||||||||||| || | ||||||||| |
Sbjct 782 GACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTGCTTTCACATTGG 841
Query 982 CTGTGACACAGTGGCGAACCAAGTTTAGAA-AGGCTATGAACAAAGCTGATAATGATGCT 1040
||||||||| ||| |||| ||||||||| || ||||||| ||||||||||||||||||
Sbjct 842 TTGTGACACAATGGAGAACTAAGTTTAGATTAG-CTATGAATAAAGCTGATAATGATGCT 900
Query 1041 AGCACAAGGGCCATTGATTCTCTGATAAATTATGAGACTGTCAAATATTTTAACAATGAA 1100
|||||||| || ||||||||||| ||||| || |||||||| || ||||| || || |||
Sbjct 901 AGCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATTTCAATAACGAA 960
Query 1101 GGTTATGA-GGCTGAAAAGTATGACCAGTTCCT-GAAAAAATATGAAGATGCTGCCCTGC 1158
| ||| || || |||| ||| || | || || |||| | |||||||||||||| |||
Sbjct 961 GATTACGAAGGGAGAAA-GTACGATGATTTACTCGAAAGA-TATGAAGATGCTGCATTGC 1018
Query 1159 AAACTCA-AAGAAGTCTTGC-TTTCTTAAACTTTGGACAAAGTATCATATTTAGTACAGC 1216
|||||| || ||||||||| ||| ||| | |||||||| ||| | ||||||||||||||
Sbjct 1019 GAACTCAGAA-AAGTCTTGCCTTT-TTAGATTTTGGACAGAGTTTTATATTTAGTACAGC 1076
Query 1217 TTTATCAACAGCAATGGTGTTGTGCTCTCA-GGGTATCATGAATGGCCAGATGACAGTCG 1275
||| |||||| ||||||||||||| ||||| ||| || |||||||| |||||||||| |
Sbjct 1077 TTTGTCAACATCAATGGTGTTGTGTTCTCAAGGG-ATTATGAATGGAGAGATGACAGTTG 1135
Query 1276 GTGATTTGGTTATGGTGAATGGACTTCTCTTTCAGCTGTCTCTTCCTCTAAATTTT-TTG 1334
|||||||||| ||||||||||| ||||||||||| ||||||||||||| | ||| |||
Sbjct 1136 GTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTTG 1195
Query 1335 GGTAGTGTTTACCGTGAAACAATTCAGAGCCTTGTGGACATGAAATCAATGTTCCAGTTG 1394
| | |||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 1196 G-TGGTGTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCCAGTTG 1254
Query 1395 CTAGAGGAGAAATCTGACATC--ACA-AA---TACAAGTGACGCAAAGC--C-TCTT--- 1442
|||||||||| ||| || ||| | | || ||||| | || ||||| | ||||
Sbjct 1255 CTAGAGGAGAGATCCGATATCGGAGATAAAGATACAAAT-AC--AAAGCTTCCTCTTCTT 1311
Query 1443 GTACTGAAAGGTGGAAACATTGAGTTT-GAAAATGTACACTTCAGTTACCTTCCAGAGAG 1501
|| ||||||||||||| ||| ||||| || ||||||||||| ||||| || || |||||
Sbjct 1312 GTTCTGAAAGGTGGAAGTATT-AGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGAG 1370
Query 1502 AAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGG 1561
|| || |||||||| ||||| |||| |||||||| || ||||||||||| || |||||
Sbjct 1371 GAAGATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGG 1430
Query 1562 TACTAGCGGGAGCGGCAAGTCAACAATTCTTAGGATGCTATTCAGATTCTTCGACACAGA 1621
|| |||||| ||||| || || || |||||||| ||| |||| |||||||| ||||||||
Sbjct 1431 TAGTAGCGGAAGCGGAAAATCGACGATTCTTAGAATGATATTTAGATTCTTTGACACAGA 1490
Query 1622 TTCCGGAAATATAAGGATTGACGGGCAAGATATAAAGGAAGTGAGACTAGATAGCCTCCG 1681
|||||||||| ||| |||||| || || |||||||||||||||||| |||| || || ||
Sbjct 1491 TTCCGGAAATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTTCG 1550
Query 1682 AAGCTCCATAGGAGTTGTGCCGCAAGATACTGTTCTCTTCAATGACACAATATTTCACAA 1741
||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1551 AAGCTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAA 1610
Query 1742 CATACATTATGGACGTCTCTCAGCTACAGAAGAAGAGGTGTATGAGGCTGCTCGGCGTGC 1801
||| || |||||| ||| ||||| ||||| ||||||||||| || || |||||||| ||
Sbjct 1611 CATTCACTATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAAGCAGCTCGGCGAGC 1670
Query 1802 TGCAATTCATGAAACAATCA-GTAATTTCCCTGATAAATATTCCAC-GATCGTTGGG-GA 1858
|| ||||| || || |||| | |||| ||| ||||||||| || | || |||| ||
Sbjct 1671 AGCGATTCACGATACGATCATGAAATT-CCCGGATAAATATAGGACCG--CGGTGGGAGA 1727
Query 1859 AAGGGGGCTCAAGTTGAGTGGTGGAGAGAAACAAAGAGTGGCACTTGCTCG-GACATTTT 1917
||| ||| | | | ||||||||||||||||||||||||||||||| ||||| | | |||
Sbjct 1728 AAGAGGGTTGATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCC-TTTC 1786
Query 1918 TGAAATCCCCTGCGATTCTGTTGTGTGATGAGGCAACGAGTGCGCTGGACAGCACAACAG 1977
||||||| ||||| || ||||||||||| || |||||||||||||| ||||| | |||||
Sbjct 1787 TGAAATCACCTGCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAG 1846
Query 1978 AGGCAGAGATACTGAACGCACTCA-AGGCACTAGCGAGTAACAGGACAT-CTATCTTCAT 2035
||||||||||| |||| | |||| | | ||||||||||||| || | | |||||||
Sbjct 1847 AGGCAGAGATAATGAAAACGCTCAGAT-CGTTAGCGAGTAACAGAACTTGCG-TCTTCAT 1904
Query 2036 TGCCCACAGGCTGACCACTGCGATGCAATGTGACGAGATCGTAGTACTGGA-AAACGGGA 2094
||| || |||||||||||||||||||||||||| || || ||||| |||| ||| ||||
Sbjct 1905 TGCACATAGGCTGACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAA-GGGA 1963
Query 2095 AGGTGGTGGAACAAGGCCCCCACGACGAGCTATTGGGAAAATCAGGGAGATATGCGCAGC 2154
| || |||||| |||| | ||| | | | | ||||| ||||| |||||||| || ||
Sbjct 1964 AAGTAGTGGAAAAAGGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGC-CAAT 2022
Query 2155 TA-TGGACACAACAAAACAG 2173
| |||||||||||||||||
Sbjct 2023 TTGTGGACACAACAAAACAG 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89016902565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5