BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58280.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917545 jgi|Araly1|917545|Al_scaffold_0008_2296 1214 0.0
> Ahg917545 jgi|Araly1|917545|Al_scaffold_0008_2296
Length=804
Score = 1214 bits (657), Expect = 0.0
Identities = 768/819 (94%), Gaps = 18/819 (2%)
Strand=Plus/Plus
Query 7 ATGGCCTATGAGGAAGCTCGCAAGCTCCGTCTTCAAGAGAATCACAAGCGATTTCAATC- 65
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 ATGGCTTATGAGGAAGCTCGCAAGCTCCGTCTTCAAGAGAATCACAAGCGATTTC-AGCT 59
Query 66 CAATTTTGTAGCTTTACCACAATTTCAGCTTCTTCAGCAGCGTAATCACAAACCCATCGA 125
|||||||| ||||||||| |||||||||||||||||||||||||| | || |||||||||
Sbjct 60 CAATTTTGCAGCTTTACCTCAATTTCAGCTTCTTCAGCAGCGTAACCCCAGACCCATCGA 119
Query 126 TAAAGCCCTCTTAGCTACTGCTGAACCAAGACGCTCTTCCCGTGTTCGTACCGTAATTTC 185
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 120 TAAAGCCCTCTTTGCTACTGCTGAACCAAGGCGCTCTTCTCGTGTTCGTACCGTAATTTC 179
Query 186 TTCCTATCGCGATGATGTCGTCGTAGACACTGGTCGTACTTCGAATCTGAGGAGATCGCG 245
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TTCCTATCGCGATGATGTCGCCGTAGACACTGGTCGTACTTCGAATCTGAGGAGATCACG 239
Query 246 ACATAGCTCTACATGGGCGACCTACATTTCTCGACCTCTCCATGAGTGCAAGTTTGCATC 305
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 240 GCATAGCTCTACATGGGCTACCTACATTTCTCGTCCTCTACATGAGTGCAAGTTTGCATC 299
Query 306 TTATGAAGAAAAGGTTGGAGCATTCAAGGCTGCAGAGAAGTTCCAGAGGAGCCTTAAATC 365
||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 300 TTACGAAGAAAAGGTTGGAGCACTCAATGCTGCAGAGAAGTTCCAGAGCCGCCTTAAATC 359
Query 366 TCCACATCCTTACTTTGTGAAATCTATGGTTCGCTCCCATGTTTACAGTTGCTTTTGGCT 425
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCACATCCTTCCTTTGTGAAATCTATGGTTCGCTCCCATGTTTACAGTTGCTTTTGGCT 419
Query 426 GGGGCTTCCTTCAAGATTCTGTGCAGACAATTTTCCTGAGGAAACTATGGAAATAGAACT 485
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 420 GGGGCTTCCTTCAAGATTCTGTGTGGACAATTTTCCTGAGGAAACTATGGAAATAGTACT 479
Query 486 AGAGGATGAAGAAGGCGAAGTGTATGAAGCAGTGTACATTGGTAGAAGA-GCTGGACTCA 544
|||||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||||
Sbjct 480 AGAGGATGAAGAAGGCGAAGAGTATGAAGCAGTGTACATTGGGAGAAGAAG-TGGGCTCA 538
Query 545 GTGGTGGTTGGAAAAGGTTTGCTCTTGATCATAAATTGGATGATGGTGATGCTCTACTCT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGGTGGTTGGAAAAGGTTTGCTCTTGATCATAAATTGGATGATGGTGATGCTCTACTCT 598
Query 605 TTGAATTGGTTGAACCAAAGAAGTTCAAGATCTATGTGTTTAAAGGAAATGAGAACGCTA 664
|| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TTCAATTGGTTGAACCAAAGAGGTTTAAGATCTATGTGTTTAAAGGAAATGAGAACGCTA 658
Query 665 ATCTTACAAGCGCCAG-AAAGAGAGGCAGAGCAACGACGCCAAGTgaagaagaagaagaa 723
||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||
Sbjct 659 ATCTTACAAGCGC-AGGAAAGAGAGGCAGAGC---GAC---AAGTGAAGAAGAAGAAGAA 711
Query 724 gaagaagaTAAGGATGTTGAAGAATCAGGTGATGAGGAACACAGCTCAAGAGCCACTAAG 783
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 712 GA------TAAGGATGTTGAAGAATCAGGTGACGAGGAACACAGCTCAAGAGCCACTAAG 765
Query 784 AGATCATCCGTAAGGTTACTAAGGAAGAGGAAAGCATAA 822
|||||||||| ||||||||||||||||||||||||||||
Sbjct 766 AGATCATCCGCAAGGTTACTAAGGAAGAGGAAAGCATAA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5