BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58310.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495943 jgi|Araly1|495943|fgenesh2_kg.8__1759__AT5G58310.1 1502 0.0
> Ahg495943 jgi|Araly1|495943|fgenesh2_kg.8__1759__AT5G58310.1
Length=973
Score = 1502 bits (813), Expect = 0.0
Identities = 924/977 (95%), Gaps = 10/977 (1%)
Strand=Plus/Plus
Query 16 AAATATCACACTAACTACAAAAGATAGTGCAAGGAATGTGATGTACGAGAAGAGGATTAA 75
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||
Sbjct 1 AAATATCACACTAACTACAAAAGATAGTGCAAGGAATATGATGTATGAGAAGAAGATTAG 60
Query 76 AGATGAGTGAGCATCATTTTGTGTTTGTGCATGGTGCAGGGCATGGAGGATGGTGTTGGT 135
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 61 AGATGACTGAGCATCATTTTGTGTTTGTGCATGGAGCAGGTCATGGAGGATGGTGTTGGT 120
Query 136 ACAAGCTGGCTAATTCACTGAGGGATAATGGACATAAGGCTACATGTATAGACCTCAAGG 195
||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 121 ACAAGCTCGCCAATTCACTGAGGGAGAATGGACATAAGGCTACATGTATCGACCTCAAGG 180
Query 196 GTGCTGGTATCAACCCAACTGATCCAAACACTGTCTCTTCTTTGGATGACTACGACGAGC 255
| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GCGCTGGGATCAACCAAACTGATCCAAATACTGTCTCTTCTTTGGATGACTACGACGAGC 240
Query 256 CTCTCTATGCCTTCCTCTCCCAACTTCCCAACGATCAAAAGGTCATTCTTGTGAGCCACA 315
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CTCTCTATGCCTTCCTCTCCCAACTTCCCATCGATCAAAAGGTCATTCTTGTGAGCCACA 300
Query 316 GCGTTGGAGGAGGGAGCATGACGGCTGCCATGTGCCTCTTTCCTTCCAAAGTTTCCTTGG 375
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGTTGGAGGAGGGAGCATGACTGCTGCCATGTGCCTCTTTCCTTCCAAAGTTTCCTTGG 360
Query 376 CGGTTTACGTCGCAGCAGCCATGGTCAAACCTGGTACCTTGATTCCTGAAAGACTCAAAA 435
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 CGGTTTTCGTCGCAGCTGCCATGGTCAAACCTGGTACCTTGATTCCCGAAAGACTCAAAA 420
Query 436 ATGTAATGAAGATATGTTCAGGATTGATAGAGGAGGAAACTGAGAAGATATGGGACTTTA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 ATGTAATGAAGATATGTTCAGGATTGATAGAGGAGGAAACTGAGAAGATATGGGACTATA 480
Query 496 CTTTCGGAAATGGACCACAAAATCTCCCAACAAGCATCATGATGAAACCTGAGTATGTTC 555
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTTTGGAAACGGACCAGAAAATCTCCCAACAAGCATCATGATGAAACCTGAGTATGTTC 540
Query 556 GGGACAAGTTTTACAACGAGAGCCCCATGGAGGATTACACACTGGCAACCACACTTCTGC 615
|||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 541 GGGACAAGTTTTACAACGAGAGTCCCATGGAGGATTACACACTGGCTACAACGCTTCTGC 600
Query 616 GTCCGGCCCCTGTCATGGCATTCATAGGCATAATGGATATTCCGGGAGCTCCAGAGACTG 675
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 601 GTCCGGCCCCTGTCATGGCATTCGTAGGCATAATGGATATTCCGAAAGCTCCAGAGGCTG 660
Query 676 ACAAAATCCCAAGAGTGTACGTGAAGACAGGCAAGGACCATTTGTTCGAACCAGTTCTTC 735
|||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 ACAAAACCCCAAGGGTGTACGTGAAGACAGGGAAGGACCATTTGTTCGAACCAGTTCTTC 720
Query 736 AAGAGGTAATGTTGGCCCTGTGGCCTCCTGCTCACACCTTCCTTCTTCCGGACAGTGACC 795
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 721 AAGAGGTAATGTTGGCCCTGTGGCCTCCTGCTCAGACCTTCCTTCTTCCGGACAGTGATC 780
Query 796 ACTCTGCTTTTTTCTCCCAACCTCAAGAACTCTATCAATTCCTCCTTCAAGCAGCCTCAT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTCTGCTTTTTTCTCCCAACCTCAAGAACTCTATCAATTCCTCCTTCAAGCAGCCTCAT 840
Query 856 CTCTTTCTCCCTGATA--T-TT-AT--GTCTCTCTGGAACTCTTTTAAATCCATCTTTTG 909
||||||||||||||| | || || ||||||||||||||||| ||||||||||||||
Sbjct 841 CTCTTTCTCCCTGATTCCTCTTTATATGTCTCTCTGGAACTCTTCCAAATCCATCTTTTG 900
Query 910 GATACTTACTTAGCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACAGAAA 969
||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 901 GATACTTG----GCTTGCATAAAACTGAATCATATTCATATATATTATGAGATACATAGA 956
Query 970 AAGGAGCCTACAATAAT 986
|||||||||||||||||
Sbjct 957 AAGGAGCCTACAATAAT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5