BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58340.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917551 jgi|Araly1|917551|Al_scaffold_0008_2302 1892 0.0
Ahg358051 jgi|Araly1|358051|fgenesh1_pg.C_scaffold_8001838 765 0.0
Ahg950538 jgi|Araly1|950538|scaffold_802425.1 758 0.0
Ahg950402 jgi|Araly1|950402|scaffold_802289.1 392 4e-108
> Ahg917551 jgi|Araly1|917551|Al_scaffold_0008_2302
Length=1344
Score = 1892 bits (1024), Expect = 0.0
Identities = 1245/1352 (92%), Gaps = 13/1352 (1%)
Strand=Plus/Plus
Query 113 ATGGAGGTCATTGATCAATGGGTTGCTGAATTTTTCCTCCTTCGACAACACAATCCTAGG 172
||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1 ATGGAAGTCATTGATCAATGGGTTGCTGAATTTATCCTCCGTCGACAACATAATCCTAGG 60
Query 173 GCTT-CCCCTATTAATCTGATTTCGGCGCTAAAATTAGGAGATTCCTCCGACTGCATAAA 231
| || |||||||||||||||||||||| || |||| || |||||||| |||||||||||
Sbjct 61 G-TTGCCCCTATTAATCTGATTTCGGCTCTGCAATTGGGTGATTCCTCTGACTGCATAAA 119
Query 232 GCTCAAGATATCTTCCGTCTTGCGTGACATCTCCAATTCATTGATCCGAGGTACGATTGA 291
|||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 120 CCTCAAGGTATCTTCTGTCTTGCGGGATATCTCCAATTCATTGATCCGAGGTACGATCGA 179
Query 292 TGAGGGAATGCTCGATCTTCTCGAGATTCTTGAGAAGCTTCTCTTGCAGCAACATTCGCT 351
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAGGGAATGCTTGACCTTCTTGAGATTCTTGAGAAGCTTCTCTTGCAGCAACATTCGCT 239
Query 352 ACTCATGGATTCTCACAAGTCTGCTTATTGCTGGACGGCTACTGAGTGTACGCTTAGATT 411
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 240 ACTCATGGAGTCTCACAAGTCTGCTTATTCCTGGACGGCTGCTGAGTGTACGCTTAGATT 299
Query 412 TATGTGGCCAATGTTTGCTTCGGATGGTTTGTTCACCGATGCGCTTGAGAGGATATGGAC 471
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 300 TATGTGGCCAATGTTTGCTTCGGATGGTTTGTTCACCGAGGCTCTTGAGAGGATATGGAC 359
Query 472 GAAGAGGATTGGGATTTTGAAGGAGAGTGGTAGCGATTTGGTGACTTGTGACTTGTTGAA 531
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 360 GAAGAGGATTGGGATTTTGAAGGAGAGTGGTAGCAATTTGGTGACTCATGACTTGTTGAA 419
Query 532 ATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATCAGCGAATTCGTG 590
||||||| |||||| || ||||||||| || || |||||||||||||||||||||||||
Sbjct 420 GTGGGAGACTGATTTTAACAAGGCCCTT-GAGGAACCTGAGCTCTATCAGCGAATTCGTG 478
Query 591 AGACTAACATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCAAAGAACAGTGGG 650
||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 479 AGAGTAACATCAGGTACACTGCCATTTCCTTTCTTACTCAGCTTCTCAAAGAACAATGGG 538
Query 651 CATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAAAGAAGGTTTCTTAAGCGCAAGG 710
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 CATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAACGAAGGTTTCTTAAGCGCAAGA 598
Query 711 CTGTGAACGTAGAGGGTGATGTTGTTGACAACAGAGGGGATCAAAGTGATGTTGATGAAA 770
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 CTGTGAACGTAGAGGGTGATGTTGTTGACAACAGAGGGGATCAAAGTGCTGTTGATGAAA 658
Query 771 GCACGAGACGTTTTGG-GAGTGATACTATTGATATCGCCAACGAGGC-GCGTGGTGAAAG 828
||||||| || ||||| |||||| || ||||| | |||||| || |||| | | | |
Sbjct 659 GCACGAGGCG-TTTGGAGAGTGACACCGTTGATGTTATCAACGA-GCAGCGT-G-G-AGG 713
Query 829 GGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATGGTGAAGGAATGGAATGTCT 888
||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 714 GGAGGACAGGAATGGGATTAATAGAGAGAACGCTAATGATGGTGAAAGAATGGAATGTCC 773
Query 889 GGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGGAGCACACAGTGAGTGCACA 948
|||||||||||||||||||||| |||||||||||||||||| |||||| || |||||||
Sbjct 774 AGAGAATGATGGGATTGATAATGGGAATGCAGCAGACGAGGATCACACAATGGGTGCACA 833
Query 949 AGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAATGGCTGCTCGAGAGCTGAA 1008
||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 834 AGAACAGGAACATGAGCCAAGTCTTGATAAGGGAGACAAAACGGTTGCTCGAGAGCTGAA 893
Query 1009 GGAATATTTAG-TAGAGATTCAAGGACACATCGACCCTTCCACTAGGCAAGGGGAAGAAC 1067
||| ||||| | ||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 894 GGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCCATTAGGCGAGGGGAAGAAC 952
Query 1068 CTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCGCCTACTCGGGTGAATAGGA 1127
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 953 CTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAGCCTACTCGGGTGAATAGGA 1012
Query 1128 CTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAATGTAAATGAGAAAGGTTCGG 1187
|||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 1013 CTGGAACACGCGGTCAAGACCATAATGAAGCAACGGATAATGTAAATGAGAAAGGTTCAG 1072
Query 1188 ATAGTCAGGAAACATGGTCTAGCAGAGTTCGGCCTCGTCGACCAACCCCTGTAACTCTGA 1247
||||||||| ||||||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct 1073 ATAGTCAGGGAACATGGTCTAGCAGAGTTCGGCCTCGTCTACCAAGCCCAGTTCCTCTGA 1132
Query 1248 GTGTATCTCCATTAAAGAAAGGCGGATTGGCGAAACCACATGTCAGGAGACCAAAGAAAT 1307
||||||||| || ||||| ||||||||||||||||| | ||||||||| ||||||||||
Sbjct 1133 ATGTATCTCCGTTGAAGAAGGGCGGATTGGCGAAACCCCCTGTCAGGAGGCCAAAGAAAT 1192
Query 1308 TCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAGTATGGTAAATCAT 1367
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAGTATGGTAAATCAT 1252
Query 1368 GGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAGGTGGATTTGA 1427
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 1253 GGAAAGATATAAAGAATGGAAACCCTGCACTATTCGCGGAGAGGACAGAGGTGGATTTGA 1312
Query 1428 AAGATAAATGGAGGAACTTAGTCGGTGGGTAG 1459
| |||||||||||||||||||| |||||||||
Sbjct 1313 AGGATAAATGGAGGAACTTAGTTGGTGGGTAG 1344
> Ahg358051 jgi|Araly1|358051|fgenesh1_pg.C_scaffold_8001838
Length=651
Score = 765 bits (414), Expect = 0.0
Identities = 508/553 (92%), Gaps = 7/553 (1%)
Strand=Plus/Plus
Query 810 ACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATG 869
||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |||||
Sbjct 32 ACGAGTCGCGTGGTGAAAGGGAGGACGTTAATGGGATTGATAGAGAGAACGCTACTGATG 91
Query 870 GTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGG 929
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 92 GTGATGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGAGGAGG 151
Query 930 AGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAA 989
|||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 152 AGCACACAATGAGTGCACAAGAACAGGAACATGAGCAAAGTCTTGATAAGGGAGACAAAA 211
Query 990 TGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGATTCAAGGACACATCGACCCTTCC 1048
||| ||||||||||||| |||| ||||| || |||||||||| |||||||||||||||||
Sbjct 212 TGGTTGCTCGAGAGCTGGAGGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCC 270
Query 1049 ACTAGGCAAGGGGAAGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCG 1108
| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 271 ATTAGGCGAGGGGAAGAACCTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAG 330
Query 1109 CCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAAT 1168
||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||
Sbjct 331 CCTACTCGGGTGAATAGGACTGGAACACGCGGTCAAGACCATAATGAAGCAACAGATAAT 390
Query 1169 GTAAATGAGAAAGGTTCGGATAGTCAG-GAAACATGGTCTAGCAGAGTTCGGCCTCGTCG 1227
||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||
Sbjct 391 GTAAATGAGAAAGGTTCTGATAGTCAGAGAA-CGTGGTCTGGCAGAGTTCGGCCTCGTCT 449
Query 1228 ACCAACCCCTGTAACTCTGAGTGTATCTCCATTAAAGAAAGG-CGGATTGGCGAAACCAC 1286
|||||||||||||||||||| |||||||||||| ||||| || ||||||||| ||||| |
Sbjct 450 ACCAACCCCTGTAACTCTGAATGTATCTCCATTGAAGAA-GGACGGATTGGCAAAACCCC 508
Query 1287 ATGTCAGGAGACCAAAGAAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1346
||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 509 ATGTCAGAAGGCCAAAGAAATTCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAG 568
Query 1347 TAAAA-GAGTATG 1358
||||| |||||||
Sbjct 569 TAAAAAGAGTATG 581
> Ahg950538 jgi|Araly1|950538|scaffold_802425.1
Length=1384
Score = 758 bits (410), Expect = 0.0
Identities = 501/545 (92%), Gaps = 6/545 (1%)
Strand=Plus/Plus
Query 810 ACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATG 869
||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |||||
Sbjct 556 ACGAGTCGCGTGGTGAAAGGGAGGACGTTAATGGGATTGATAGAGAGAACGCTACTGATG 615
Query 870 GTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGG 929
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 616 GTGATGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGAGGAGG 675
Query 930 AGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAA 989
|||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 676 AGCACACAATGAGTGCACAAGAACAGGAACATGAGCAAAGTCTTGATAAGGGAGACAAAA 735
Query 990 TGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGATTCAAGGACACATCGACCCTTCC 1048
||| ||||||||||||| |||| ||||| || |||||||||| |||||||||||||||||
Sbjct 736 TGGTTGCTCGAGAGCTGGAGGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCC 794
Query 1049 ACTAGGCAAGGGGAAGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCG 1108
| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 795 ATTAGGCGAGGGGAAGAACCTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAG 854
Query 1109 CCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAAT 1168
||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||
Sbjct 855 CCTACTCGGGTGAATAGGACTGGAACACGCGGTCAAGACCATAATGAAGCAACAGATAAT 914
Query 1169 GTAAATGAGAAAGGTTCGGATAGTCAG-GAAACATGGTCTAGCAGAGTTCGGCCTCGTCG 1227
||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||
Sbjct 915 GTAAATGAGAAAGGTTCTGATAGTCAGAGAA-CGTGGTCTGGCAGAGTTCGGCCTCGTCT 973
Query 1228 ACCAACCCCTGTAACTCTGAGTGTATCTCCATTAAAGAAAGG-CGGATTGGCGAAACCAC 1286
|||||||||||||||||||| |||||||||||| ||||| || ||||||||| ||||| |
Sbjct 974 ACCAACCCCTGTAACTCTGAATGTATCTCCATTGAAGAA-GGACGGATTGGCAAAACCCC 1032
Query 1287 ATGTCAGGAGACCAAAGAAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1346
||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1033 ATGTCAGAAGGCCAAAGAAATTCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1092
Query 1347 TAAAA 1351
|||||
Sbjct 1093 TAAAA 1097
Score = 263 bits (142), Expect = 3e-69
Identities = 169/182 (93%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 520 TGACTTGTTGAAATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATC 578
|||||||||||| ||||||| |||||| |||||||| | | || || |||||||||||||
Sbjct 356 TGACTTGTTGAAGTGGGAGACTGATTTTAAGAAGGCTC-TCGAGGAACCTGAGCTCTATC 414
Query 579 AGCGAATTCGTGAGACTAACATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCA 638
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGCGAATTCGTGAGACTAATATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCA 474
Query 639 AAGAACAGTGGGCATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAAAGAAGGTTTC 698
|||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 475 AAGAGCAGTGGGCATTACTTGGGAGTTTCTCTCTTGAATCAGTTTCTCAAAGAAGGTTTC 534
Query 699 TT 700
||
Sbjct 535 TT 536
> Ahg950402 jgi|Araly1|950402|scaffold_802289.1
Length=902
Score = 392 bits (212), Expect = 4e-108
Identities = 260/283 (92%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 745 AGGGGATCAAAGTGATGTTGATGAAAGCACGAGACGTTTTGG-GAGTGATACTATTGATA 803
|||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 596 AGGGGATCAAAGTGCTGTTGATGAAAGCACAAGGCG-TTTGGAGAGTGATACTATTGATA 654
Query 804 TCGCCAACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTA 863
||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 655 TCGCCAACGAGTCGCGTGGTGAAAGGGAGGACGGTAATGGGATTAATAGAGAGAACGCTA 714
Query 864 ATGATGGTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAG 923
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 ATGATGGTGATGGAATGGACTGTCTCGAGAATGATGGGATTGATAATGTGAATGCAGCAG 774
Query 924 ACGAGGAGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAG 983
| |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 775 AGGAGGAGCACACAATGAGTGCACAAGAACTGGAACATGAGCCAAGTCTTGATAAGGGAG 834
Query 984 ACGAAATGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGA 1025
|| |||||| |||||||||||||||| | ||||| || |||||
Sbjct 835 ACAAAATGGTTGCTCGAGAGCTGAAGTATTATTT-GTTAGAGA 876
Score = 93.5 bits (50), Expect = 4e-18
Identities = 67/75 (89%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 531 AATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATCAGCGAATTCGT 589
||||||||| |||||| |||||||| | | || || ||||||||||||||||||||||||
Sbjct 525 AATGGGAGACTGATTTTAAGAAGGCTC-TCGAGGAACCTGAGCTCTATCAGCGAATTCGT 583
Query 590 GAGACTAACATCAGG 604
|||||||| ||||||
Sbjct 584 GAGACTAATATCAGG 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5