BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58350.1
Length=2552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495950 jgi|Araly1|495950|fgenesh2_kg.8__1766__AT5G58350.1 3875 0.0
Ahg917423 jgi|Araly1|917423|Al_scaffold_0008_2174 676 0.0
> Ahg495950 jgi|Araly1|495950|fgenesh2_kg.8__1766__AT5G58350.1
Length=2487
Score = 3875 bits (2098), Expect = 0.0
Identities = 2388/2522 (95%), Gaps = 43/2522 (2%)
Strand=Plus/Plus
Query 1 AGGAACTGGCCGCCAACAAAAACAAAACAATT-TTCAACGGTGATGTCACTATCACTCTA 59
|||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1 AGGAACTGGCTGCCAACAAAAAAAAAACAATTGTTCAGCGGTGATGTCACTATCACTCTA 60
Query 60 TTCTCTACAACTTCTTGTCATGTTCCCCACTTCTGTTCTGACTTTTCCCCTTTTCTTTGT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCTACAACTTCTTGTCATGTTCCCCACTTCTGTTCTGACTTTTCCCCTTTTCTTTGT 120
Query 120 CGTTTTATTTTTGTTAACCTCAATCTATTTATTTTGGATTGCTTGTGTTCACCAAACTAA 179
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CATTTTATTTTTGTTAACCTCAATC----TATTTTGGATTGCTTGTGTTCACCAAACTAA 176
Query 180 TAATTGGTTCAATTGAAAATTGTGCAGTTTCCTCAAGAAACAAAACTCTTTCCTGAATAT 239
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 177 TAATTGGTTCAATTGAAAAATGTGCAGTTTCCTCAAGAAACAAAACTCTTTCCTCTATAT 236
Query 240 CGCATTTCCCAGTATCCACACTTTCTTAACTCTTATCCTCTTTGCAATTGTGTTTGTGGT 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGCATTTCCTAGTATCCACACTTTCTTAACTCTTATCCTCTTTGCAATTGTGTTTGTGGT 296
Query 300 TCACAAAATAAACAAGGGCATCTTTTGAGCATATTTAGCCATGTGTTTTCAATGTGGTAC 359
||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 297 TCACAAAATAAACCAGGGCATCTTTTGAGCATATTTTGCTATGT-TTTTCAATGTGGTAC 355
Query 360 ACGTTTGATGAtttttttttcatttttGTGGTTTGAGTATCTTGTATTGGCAAGTAAGAT 419
|||||||||| | | ||| | | || |||||||||||||| |
Sbjct 356 ACGTTTGATG-----------A------T--TTT---T-T-TT-TATTGGCAAGTAAGTT 390
Query 420 TTGTCAAACTTTCGATTTTTAG-ATT--TACAATTG-GGTCAATAAAAATAAATATATGA 475
|||||||||||| ||||||| | ||| ||||| || |||||||||||||||| |||||
Sbjct 391 TTGTCAAACTTTGGATTTTTTGAATTACTACAA-TGCGGTCAATAAAAATAAAAATATGG 449
Query 476 TTTTCTATAATATATGTGATGCAAGCAAGGTTAAGGCAAATTGTCTTTATTCTTTTTATC 535
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 450 TTTTCTATAATATATGTGATGCAAGCAAGGTTAAGGC-AATTGTCTTTATTCATTTTATC 508
Query 536 CCAAATGGGTGATTGACGCCAACGACTGTTCAACATATTTTCTGCTGACGCTTCTTTAAT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 CCAAATGGGTGATTGACGCCAACGACTGTTCAACATATTTTCTGCTGACGCTTCTTTAAT 568
Query 596 GAAGTAGCACGAAG-AAGTAAACAGGACGACTTTTGGCCACCGGAAAATTTCTCTGTTAT 654
||||||||| |||| ||||||| ||||||||||||||||||| | || | |||||||| |
Sbjct 569 GAAGTAGCAAGAAGAAAGTAAATAGGACGACTTTTGGCCACCAG-AAGTATCTCTGTTTT 627
Query 655 AAAAACGAAAGTCTGTGTCCTCTTAAACATTTTTGGGATCATCAATCGGTTTTTGGTCAA 714
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 628 AAGAACGAAAGTCTGTGTCCTCTTAAACATTTCTGGGATCATCAATTGGTTTTTGGTCAA 687
Query 715 CCATGAATATGAATCAAGTTGCAGAGTATGTGGAAACTGATCCAACTGGTCGCTATGGAC 774
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 688 CCATGAATATGAATCAAGTTGCAGAGTATGTCGAAACTGATCCAACTGGTCGCTATGGAC 747
Query 775 GTTTTGCAGAAATTCTTGGAAGGGGAGCGATGAAGACAGTGTACAAAGCAATCGACGAGA 834
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 748 GTTTTGCAGAAATTCTTGGAAGGGGAGCGATGAAGACAGTATACAAAGCAATCGATGAGA 807
Query 835 AGCTGGGAATAGAAGTAGCATGGAGCCAGGTGAAGCTTAAGGAGGTTCTGCGTTCCTCTG 894
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 808 AGCTGGGAATAGAAGTAGCATGGAGCCAAGTGAAGCTTAAAGAGGTTCTGCGTTCATCTG 867
Query 895 TTGATCTACAGAGGCTTTACTCCGAGGTTCATCTCCTCAGCACTCTCAACCACAAATCCA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 868 TTGATCTACAGAGGCTTTACTCCGAGGTTCATCTCCTCAGCACTCTCAACCACAAATCTA 927
Query 955 TCATTCGTTTCTACACTTCCTGGATCGATGTTCATAACCACACTCTCAACTTCATCACCG 1014
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 928 TCATTCGTTTCTACACTTCCTGGATTGATGTTCATAACCATACTCTCAACTTCATCACCG 987
Query 1015 AGTTGTTCACTTCAGGGACCCTCCGACAATACAAAAATAAGTACTTGCGGATAGATATCC 1074
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AGTTGTTCACTTCTGGGACCCTCCGACAATACAAAAATAAGTACTTGCGGATAGATATCC 1047
Query 1075 GAGCAATCAAGTCCTGGGCTCGGCAAATCTTGGAAGGGCTAGTTTATCTCCAC-GAGCAC 1133
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1048 GAGCAATCAAGTCCTGGGCTCGGCAAATCTTGGAAGGGCTTGTTTATCTCCACGGA-CAC 1106
Query 1134 GACCCTCCTGTTATCCATAGAGACCTTAAGTGTGATAATATCTTTGTGAATGGGCATCTT 1193
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1107 GACCCTCCTGTTATCCATAGAGACCTCAAGTGTGATAATATCTTTGTTAATGGGCATCTT 1166
Query 1194 GGACAAGTCAAAATTGGTGATCTTGGTCTTGCAAGAATGCTGCGGGACTGCCACTCGGCC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1167 GGACAAGTCAAAATTGGTGATCTTGGTCTTGCAAGAATGCTGCGGGACTGCCATTCTGCG 1226
Query 1254 CATAGCATCATTGGCACTCCTGAGTTCATGGCACCAGAATTATATGAGGAGAACTATAAT 1313
||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1227 CATAGTGTCATCGGCACTCCGGAGTTCATGGCTCCAGAATTATATGAGGAGAACTATAAT 1286
Query 1314 GAACTCATTGACGTATATTCCTTTGGTATGTGCTTTTTGGAGATGATCACCTCTGAGTTC 1373
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1287 GAGCTCATTGACGTTTATTCCTTTGGTATGTGCTTTTTGGAGATGATCACTTCTGAGTTC 1346
Query 1374 CCGTATAGTGAGTGCAACCATCCGGCACAGATTTACAAGAAAGTTGTTGGGGGAAAGCTA 1433
|||||||||||||||||| ||||||| || ||||||||||||||||| | ||||||||||
Sbjct 1347 CCGTATAGTGAGTGCAACAATCCGGCGCAAATTTACAAGAAAGTTGTCGCGGGAAAGCTA 1406
Query 1434 CCAGGAGCATTTTACAGAGTTGGAGACATCGAGGCACAGAGGTTCATCGGGAAATGCCTC 1493
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1407 CCAGGAGCCTTTTACAGAGTTGGAGACATTGAGGCACAGAGGTTCATCGGAAAATGTCTC 1466
Query 1494 GTGTCTGCCTCAAAGAGAGTATCAGCAAAAGAACTATTGCAAGATCCATTTCTTGCCTCC 1553
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1467 GTGTCTGCCTCAAAGAGAGTATCAGCAAACGAACTATTGCAAGATCCATTTCTTGCCTCA 1526
Query 1554 GATGAGTCCTGGATGGTATACACGAGCGGTGCTGGGAATCCAAAGCCCTTCTTGAACGAG 1613
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1527 GATGAGTCCTGGATGGTGTACGCGAGTGGTGCTGGGAATCCAAAGCCCTTCTTGAACGAG 1586
Query 1614 AATGAAATGGACACACTGAAGTTGGAAGATGATGAGTTAAGGAC-CGAGATGTCCATCGC 1672
|||||||||||| ||||||||||||||||||||||||||| ||| | | |||||||||||
Sbjct 1587 AATGAAATGGACTCACTGAAGTTGGAAGATGATGAGTTAAAGACAC-AAATGTCCATCGC 1645
Query 1673 TGGGAAGCTGGGCGCTGAAGATAACAAAATCGATCTGGAAGTACAAATCGCATATGATAA 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 TGGGAAGCTGGGCGCTGAAGATAACAAAATCGATCTGGAAGTACAAATCGCATATGATAA 1705
Query 1733 TGGTCTGGCCAATAATGTATTCTTTCCCTTTGACATCATGAATGATACTTCCATTGATGT 1792
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1706 TGGTCTGGCAAATAATGTGTTCTTCCCCTTTGACATCATGAATGATACTTCCATTGATGT 1765
Query 1793 TGCAAAGGAGATGGTAAAAGAACTCGAAATTATAGATTGGGAGCCAGTCGAGATTGCTAA 1852
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1766 TGCAAAGGAGATGGTAAAAGAACTCGAGATTATAGATTGGGAGCCAGTCGAGATTGCTAA 1825
Query 1853 AATGATTGATGGAGCGATTTCTTCTTTGGTGTCTGATTGGAAGTATGAGGAAGATGATGA 1912
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1826 AATGATTGATGGAGCGATTTCTTCTTTGGTGCCTGGTTGGAAGTATGAGGAAGATGATGA 1885
Query 1913 AACCCCTCATGATCATCATCGTCATCGTACCGATTCTTTTCACTCTTCTTCCTCGCACGC 1972
|| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 1886 AAGCCCTCATGATCATCATCGTCATCGTACCGATCCTTTCCACTCTTCTTCCTCGCACTC 1945
Query 1973 GTCATCTTCCCAAGCTTCACTCTCGAACTATATGGCTCGAGGCCTTCAAGATTGGGTACA 2032
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1946 GTCATCTTCCCAAGCTTCACTCTCTAACTATATGGCACGAGGCCTTCAAGATTGGGTACA 2005
Query 2033 AGATGATTTACACGATGAGACGTATTCTCAGAGTTCTTCCCATTCAGGGTCTTACTCCAA 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 AGATGATTTACACGATGAGACGTATTCTCAGAGTTCTTCCCATTCAGGGTCTTACTCCAA 2065
Query 2093 CCTCAACTACATAGCTGTTGATGAGTACAGCTCCCAATCTCCTGTTATGAGCAGAACTCA 2152
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 2066 CCTCAACTACATAGCTGTTGATGAGCACAGCTCCCAATCTCCTGCTATGAGCAGAACTCA 2125
Query 2153 CAACATGACGAGGTTTTGCCCCGAAGAAAGCTCTCATCTACAGTCAGGACAAGCCAACGC 2212
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2126 CAACTTGACGAGGTTTTGCCCCGAAGAAAGCTCTCATCAACAGTCAGGACAAGCCAACGC 2185
Query 2213 GTATGCAGCTTCCAGTTCAACTAACAGAAGCTTGGCTTCAGACAACCGCACACTTACAAG 2272
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2186 GTATGCAGCTTCCAGTTCAATTAACAGATGCTTGGCTTCAGACAACCGCACACTTACAAG 2245
Query 2273 GAACCGATCACTTGTAGACGTGCAGAGACAGTTACTGCACCGGTCGCCAGGGGAAGAGGC 2332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 GAACCGATCACTTGTAGACGTGCAGAGACAGTTACTGCACCGGTCGCCAGGGGAAGAGGC 2305
Query 2333 TAGAAAAAGAAGATTGTTCAAAACTGTTGGAGACGTAGAAACAGTTGGGTTTCAGTCACC 2392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2306 TAGAAAAAGAAGATTGTTCAAAACTGTTGGAGACGTAGAAACAGTTGGGTTTCAGTCGCC 2365
Query 2393 TTATGCGGTTTCACGGAAGCCACCAAGCTCAAGGCGCTAGCTTCTCCAGTATTTTAATTA 2452
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 TTATGCGGTTTCACGTAAGCCACCAAGCTCAAGGCGCTAGCTTCTCCAGTATTTTAATTA 2425
Query 2453 CTGTAATATATAAGTATACTGTAAAAAACAAGTTTGCTGGTTCAAAAATGTAAAAAGTAC 2512
|||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
Sbjct 2426 CTGTAATATATAAGTATACTGTGAGAAAGAAGTTTGCTGGTTCAAAAATGTAAAAAGTTC 2485
Query 2513 AT 2514
||
Sbjct 2486 AT 2487
> Ahg917423 jgi|Araly1|917423|Al_scaffold_0008_2174
Length=819
Score = 676 bits (366), Expect = 0.0
Identities = 438/472 (93%), Gaps = 7/472 (1%)
Strand=Plus/Plus
Query 1058 CTTGCGGATAGATATCCGAGCAATCAAGTCCTGGGCTCGGCAAATCTTGGAAGGGCTAGT 1117
|||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||| ||
Sbjct 1 CTTGCGGATAGATATCTGAGCAATCAAGTCATGGTCTCGGCAGATCTTGGAAGGGCTTGT 60
Query 1118 TTATCTCCACGAGCACGACCCTCCTGTTATCCATAGAGACCTTAAGTGTG---ATAATAT 1174
|||| | |||| ||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 61 TTATAT-CACGGGCATGACCCTCCTGTTATCCATAGAGACCTCAAGTGTGATAATAATAT 119
Query 1175 CTTTGTGAATGGGCATCTTGGACAAGTCAAAATTGGTGATCTTGGTCTTGCAAGAATGCT 1234
|||||| |||||||||||||||||||| |||||||| |||||||| ||||| || |||||
Sbjct 120 CTTTGTTAATGGGCATCTTGGACAAGTTAAAATTGGCGATCTTGGCCTTGCGAGGATGCT 179
Query 1235 GCGGGACTGCCACTCGGCCCATAGCATCATTGGCACTCCTGAGTTCATGGCACCAGAATT 1294
|||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 180 GCGGGACTGCGACTCGGCCCATAGCGTCA-T--CACTCCTGAGTTCATGGCACCAGAATT 236
Query 1295 ATATGAGGAGAACTATAATGAACTCATTGACGTATATTCCTTTGGTATGTGCTTTTTGGA 1354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 ATATGAGGAGAACTATAATGAACTCATTGACGTATACTCCTTTGGTATGTGCTTTTTGGA 296
Query 1355 GATGATCACCTCTGAGTTCCCGTATAGTGAGTGCAACCATCCGGCACAGATTTACAAGAA 1414
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 297 GATGATCACCTCTGAGTTCCCGTATAGTGAGTGCAACAATCCGGCACAGATTTACAAGGA 356
Query 1415 AGTTGTTGGGGGAAAGCTACCAGGAGCATTTTACAGAGTTGGAGACATCGAGGCACAGAG 1474
|||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 357 AGTTGTCGCGGGAAAGCTACTAGGAGCCTTTTACAGAGTTGGAGACATCGAGGCACAGAG 416
Query 1475 GTTCATCGGGAAATGCCTCGTGTCTGCCTCAAAGAGAGTATCAGCAAAAGAA 1526
||||||||||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 417 GTTCATCGGGAAACGCCTTGTGTTTGCCTCAAAGAGAGTATCAGCAAAAGAA 468
Score = 372 bits (201), Expect = 8e-102
Identities = 293/337 (87%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 1560 TCCTGGATGGTATACACGAGCGGTGCTGGGAATCCAAAGCCCTTCTTGAACGAGAATGAA 1619
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 TCCTGGATGGTATACGCGAGCGGTGCTGGGAATCCAAAGCACTTCTTGAACGAGAATGAA 528
Query 1620 ATGGACACACTGAAGTTGGAAGATGATGAGTT---AAGGACCGAGATGTCCATCGCTGGG 1676
|||| ||||||||||||||||||||||||||| ||||||| ||| | ||| | |
Sbjct 529 ATGGCCACACTGAAGTTGGAAGATGATGAGTTAGGAAGGACCCAGACGACCACCACACCA 588
Query 1677 AAGCTGGGCGCTGAAGATAACAAAATCGATCTGGA-AGTACAAATCGCATATGATAATGG 1735
|||||| |||||||||||||| |||| || | || ||||||||||||| |||| ||
Sbjct 589 AAGCTGAACGCTGAAGATAACACAATCTAT-TTGAGAGTACAAATCGCAGATGA-AA--A 644
Query 1736 TCTGGCCAATAATGTATTCTTTCCCTTTGACATCATGAATGATACTTCCATTGATGTTGC 1795
| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TATGGCAAATAACGTGTTCTTTCCCTTTGACATCATGAATGATACTTCCATTGATGTTGC 704
Query 1796 AAAGGAGATGGTAAAAGAACTCGAAATTATAGATTGGGAGCCAGTCGAGATTGCTAAAAT 1855
|||||||| ||||| ||||||||| || | ||||||||| | ||| |||||||||| |||
Sbjct 705 AAAGGAGACGGTAATAGAACTCGAGATCACAGATTGGGAACTAGTTGAGATTGCTAGAAT 764
Query 1856 GATTGATGGAGCGATTTCTTCTTTGGTGTCTGATTGG 1892
||||||||||| ||| ||||||||| |||||| ||||
Sbjct 765 GATTGATGGAGAGATCTCTTCTTTGCTGTCTGGTTGG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96215958870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5