BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58360.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332123 jgi|Araly1|332123|fgenesh1_pm.C_scaffold_8001466 1134 0.0
> Ahg332123 jgi|Araly1|332123|fgenesh1_pm.C_scaffold_8001466
Length=891
Score = 1134 bits (614), Expect = 0.0
Identities = 804/891 (90%), Gaps = 32/891 (4%)
Strand=Plus/Plus
Query 1 ATGAAACAGAAAATGGGGACTCACAAGTTCAGATTTTCAGACATGATGCCTCATTCATGG 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAATCAGAAAATGGGGACTCACAAGTTCAGATTTTCAGACATTATGCCTCATTCATGG 60
Query 61 CTCTATAAGCTCAAAGGGATGAGCAGAAGTAGCAGAAAACACCATCTTTCTTCTCCCAAA 120
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 61 ATCTATAAGCTCAAAGGGATGAGTAGAAGTAGCAGAAAACACCATCCTTCTTCTCCTAAA 120
Query 121 CATCTCTCCTCCGCTGATGCTTCTTCCTCAAGAAAGCTCCGGGACCCTCTTCGACGTCTT 180
|| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 121 CACCTCTCTTCCGCTGATGCTTCTTCCTCAAGAAAGCTCCGTGACCCTCATCGACGTCTT 180
Query 181 TCTTCGACTGCTCATCATCCTCAAGCTTCTAATTCACCTCCCAAATCTTCTTCTTTCAAG 240
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 181 TCTTCGACTGCTAATCATCCTCAAGTTTCTAATTCACCTCCAAAATCTTCTTCTTTCAAG 240
Query 241 AGAAAAATCAAACGTAAAACCGTTTACAAGCCTTCCTCAAGGCTCAAGCTCTCTACCTCT 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 241 AGAAAAATCAAACGTAAAACCATTTACAAGCCTTCCTCAAGGCTCAAGCTCTCTACATCT 300
Query 301 TCCTCTCTAAATCATCGCTCTAAGTCATCATCCTCTGCAAATGCAATCTCCGATTCCGCC 360
|| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct 301 TCTTCTCTAAATCATCGTTCTAAATCATCATCCTCTGCAAATTCAATCTCTGATTCCGTC 360
Query 361 GTTGGAAGCTTCTTAGATCGTGTATCATCTCCTTCTGACCAAAACTTTGTAC-ATGATCC 419
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 361 GTTGGAAGCTCCTTAGATCGTGTATCATCTCCTTCTGACCAAAAATTT-TACCATGATCC 419
Query 420 TGAACCGCATTCATCAATTGACATTAAGGACGAGCTCTCTGTGAGGAAGCTTGATGATGT 479
||||| ||||||| | |||||||||||||||| | |||||||| |||||||||||||||
Sbjct 420 TGAACTGCATTCA--A-TTGACATTAAGGACGACCGCTCTGTGAAGAAGCTTGATGATGT 476
Query 480 GCCTGAAGATCCTTCAGTT-TCACCAAACTTGAGTCCT-----G----AGACTGCAAAGG 529
|||||||||||||| || |||||||||||||||||| | ||||||||||||
Sbjct 477 ATCTGAAGATCCTTCA-TTCTCACCAAACTTGAGTCCTCTTCAGGTTGAGACTGCAAAGG 535
Query 530 AACCACCCTTTGAGATGATGACACAGCAGAAACTGAAGAAACCGAAAGCTCATTCGTCAG 589
||||||||||| ||||||| ||||||||| | |||||||||||||| |||| |||| |||
Sbjct 536 AACCACCCTTTAAGATGATTACACAGCAGGATCTGAAGAAACCGAATGCTCGTTCGACAG 595
Query 590 GGATAAAGATTCC--CA----CG---AAGATCGTGAGAAAGAAGAAAAAGG-AAAGAACG 639
|||||||||||| || | ||||||| ||||||||||| ||||| ||| | ||
Sbjct 596 GGATAAAGATTCGGTCAAATTCTCCCAAGATCGCGAGAAAGAAGACAAAGGGAAATA-CG 654
Query 640 TCCCAGGTATCGAAGAAAAAGGGGGTTGTAAAGAGCTTT-GCGATAGTTCTGTCTTCGGT 698
|| |||||||||||| |||||| ||||||||| ||| || |||||||||||||| ||
Sbjct 655 -CC--GGTATCGAAGAAGAAGGGGACTGTAAAGAG-TTTCGCCATAGTTCTGTCTTCAGT 710
Query 699 GGATCCTGAGAAAGATTTCAGAGAATCCATGGTTGAGATGATTATGGAGAACAAGATGAG 758
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 711 GGATCCTGAGAAAGATTTCAGAGAATCCATGGTTGAGATGATCATGGAAAACAAGATGAG 770
Query 759 GGAACAGAAAGATCTGGAAGATCTTCTAGCATGTTATCTTTCATTGAATTCGAGCGAGTA 818
|||||| ||||| |||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 771 GGAACAAAAAGACCTGGAAGATCTTCTCGCATGTTACCTTTCACTGAATTCGAGCGAGTA 830
Query 819 TCATGACGTTATCATCAAGGCTTTCGAGAATACATGGTTACATTTGACTCA 869
|||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 TCATGATGTTATCATCAAGGCTTTCGAGAAAACATGGTTACATTTGACTCA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5