BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58370.2
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917558 jgi|Araly1|917558|Al_scaffold_0008_2309 2139 0.0
> Ahg917558 jgi|Araly1|917558|Al_scaffold_0008_2309
Length=1404
Score = 2139 bits (1158), Expect = 0.0
Identities = 1328/1409 (94%), Gaps = 16/1409 (1%)
Strand=Plus/Plus
Query 242 ATGTCTTTAGATACTTCTTTAGGTCTTAAGCTCAAGAAAAGGCTGAAGCTTTCATCGTTT 301
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 1 ATGTCTTTAGATACTTCTTTAGGTCATAAGCTCAAGATAAGGCTGAAGCTTTCATCACTT 60
Query 302 AGCTCCAATTCTTCTTATAAAGGAAAGAGTAGATCCATTACTCAACGCAGTGATGATGAC 361
||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCTAATTCTTCTTCTAAAGGAAGGAGTAGATCCATTACTCAACGCAGTGATGATGAC 120
Query 362 ACTAACTCTC----G----G-AAGACTACGGTTTCGTCTATGAAGAAGAAGAGGGTCTAC 412
|||||||||| | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ACTAACTCTCGGAAGACTAGTAAGACTACGGTTTCGTATATGAAGAAGAAGAGGGTCTAC 180
Query 413 CCCAATAAGGCTAAGCATAATAACCATGTGAATGAAATCCCTCGCACGATGTGGGTTGCT 472
|| ||||||||| ||| ||||||||||||| |||||||| ||||| ||||||| |||
Sbjct 181 CCTAATAAGGCTGAGC---ATAACCATGTGAACGAAATCCCACGCACCATGTGGGCTGCC 237
Query 473 TCAAAGAGAAACCAAGGGTCTACTTCTAGTTTTAAGACCGCTAATGATGCTGCAACTAGT 532
||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 238 TCAAAGAGAAACCAACGGTCTACTTCTAGTTTTAAGACCTCTACTGATGCTGCAACAAGT 297
Query 533 GTGTTTAAAACAAAGTCACGGAGTGG-GGTTGATGTTACTCGAAAGAGCTACAGGAAGAG 591
||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||||||
Sbjct 298 GTGTTTAAAACAAAGTCACCGAG-GGTAGATGATGCTACTCGAAAGAGCTACAGGAAGAG 356
Query 592 AGATGAATTGGATAGTAATGTAGATGTGAGTCC-CAGGGAAAGTTCTGATGTGCCGTCTT 650
|||||| ||||||| ||||| ||||||||| || ||| |||| || ||||||| |||||
Sbjct 357 AGATGATTTGGATAATAATGCAGATGTGAG-CCGAAGGAAAAGCTCAGATGTGCAGTCTT 415
Query 651 TTAAGGCTAGAAAACAGGTGTTTTCAGAGAAGAGAGTTGTGGGAGATGGTTCAGATGTTC 710
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 416 TTAAGGCTAGAAAACAAGCGTTTTCAGAGAAGAGAGTTGTGGGAGATGGTTCAGATATTC 475
Query 711 AGGAGGATAAACCAAGGAAGAGAAAGAGGATACGACTTGATCCTTATGATACCTCAAATA 770
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 476 AGGAGGATAAACCAAGGAAGAGAAAGAGGATACGACTGGATCCCTATGATACCTCAAATA 535
Query 771 AAAGAATTGTTGATGATGTCCTTCTTGATGATGGCCTTAGAGTAAAGAACATAAAAGATG 830
||||||| | ||| |||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 536 AAAGAATAGATGACGATGTCGTTCTTGATGAAGGCCTTAGAGTCAAGAACATAAAAGATG 595
Query 831 CAGTTAAAAGTGTAGAAATGTCGAAAAATGCACAGTTTCGTGCAATTCAGCCTAGTCATT 890
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAGTGAAAAGCGTAGAAATGTCGAAAAATGCACAGTTTCGTGCAATTCAGCCTAGTCATT 655
Query 891 CGATCCTCTCCTATGTGGAAGAAAATCTGTTGGGGCGTAGACGTTTAATTGAGCTAAAGA 950
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGATCCTTTCCTATGTGGAAGAAAATCTGTTGGGGCGTAGACGTTTAATTGAGCTAAAGA 715
Query 951 GGGCCGGCTATAACACAGAGCTTCCTGCTCCATTAGATAATATTCCTCAGTCAACCAGCA 1010
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 AGGCCGGCTACAACACAGAGCTTCCTGCTCCATTAGATAATATTCCACAGTCAACCAGCA 775
Query 1011 CAGAGAGAGAACGTATAGAAGAAAGTGTATTTAGGAATAAATTGGAATTCTTTGCTGCTG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CAGAGAGAGAACGTATAGAAGAAAGTGTATTTAGGAATAAATTGGAATTCTTTGCTGCTG 835
Query 1071 CAAATGTTTCATCTTCATTTCCACCTCCTGATGTACCTGAGATTGCATTTGCAGGAAGGT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAAATGTTTCATCTTCATTTCCACCTCCTGATGTACCTGAGATTGCATTTGCAGGAAGGT 895
Query 1131 CAAATGTTGGCAAATCGTCTCTGCTAAATGCTCTTACCAGACAGTGGGGTGTTGTAAGAA 1190
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 896 CAAATGTTGGGAAATCGTCTCTGCTAAATGCTCTGACCAGACAGTGGGGTGTTGTAAGAA 955
Query 1191 CATCTGACAAACCAGGACTGACCCAGACCATCAATTTCTTTGGTCTTGGTCCGAAGGTTC 1250
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 956 CATCTGACAAACCAGGACTGACCCAGACCATCAATTTCTTCGGTCTTGGTCCGAAGGTTC 1015
Query 1251 GCCTTGTTGATTTGCCAGGCTACGGCTTTGCCTTTGCAAAAGATGAAGTTAAGGAAGCAT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCCTTGTTGATTTGCCAGGCTACGGCTTTGCCTTTGCAAAAGATGAAGTTAAGGAAGCAT 1075
Query 1311 GGGAAGATCTTGTAAAGGAATATGTCTCGACAAGAACCAGTCTTAAACGGGTATGCCTCC 1370
||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 1076 GGGAAGATCTTGTAAAGGAATATGTTTCGACAAGAACTAGTCTTAAAAGGGTATGCCTCC 1135
Query 1371 TTGTTGACACCAAATGGGGTATGAAGCCAAGAGACCAGGAACTGATTAATCTGATGGAGA 1430
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1136 TTGTTGACACCAAATGGGGTATGAAGCCAAGAGACCAGGAACTTATTAATCTAATGGAGA 1195
Query 1431 GATCGAATACAAAGTATCAGATAGTCTTAACCAAGACGGATGTGGTTTTCCCAATTGATG 1490
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1196 GATCGAATACAAAGTATCAGATAGTCTTAACCAAGACAGATGTGGTTTTTCCAATGGATG 1255
Query 1491 TGGCACGTCGAGCAATGCAAATCGAAGAGAAGTTGAAGGCAAACAGATCAATTGTCCAGC 1550
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGGCACGTCGGGCAATGCAAATCGAAGAGAAGTTGAAGGCAAACAGATCAATTGTCCAGC 1315
Query 1551 CTCTGATGATGGTGAGCTCAAGATCAGGAGCAGGTATAGGAAGTTTAAGAACTGCCCTTG 1610
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1316 CTCTGATGATGGTGAGCTCAAGATCAGGAGCAGGCATAGGAAGCTTAAGAACTGCCCTTG 1375
Query 1611 CTAAAATTGCTAGGTTTGCAAAGTTTTAG 1639
|||||||||| | |||||||||||| |||
Sbjct 1376 CTAAAATTGCAAAGTTTGCAAAGTTCTAG 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5