BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G58375.1

Length=610
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495954 jgi|Araly1|495954|fgenesh2_kg.8__1770__AT5G58375.1         689    0.0  


> Ahg495954 jgi|Araly1|495954|fgenesh2_kg.8__1770__AT5G58375.1
Length=530

 Score =  689 bits (373),  Expect = 0.0
 Identities = 426/451 (94%), Gaps = 6/451 (1%)
 Strand=Plus/Plus

Query  55   AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCGTTAAGGCT  114
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  38   AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCATTAAGGCT  97

Query  115  TATCCTCATATTCCTTTCAGCGACTCTCGCTGGCTTCTTCGTCCTCCAGAAGCTCAACTC  174
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  98   TATCCTCATATTCCTTTCGGCGACTCTCGCTGGGTTCTTCGTCCTCCAGAAGCTCAACTC  157

Query  175  TACCTCTGACGATCCTCTCGATGATTCCTTCACCGACGCTGAACACGCCGACGACGATTC  234
            ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct  158  TACCTCTGACGATCCTCTCGACGATTCCTTCACCGACGCTGAACCCGCCGACGACGACTC  217

Query  235  AGTCTCTGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA  294
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  AGTCTCCGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA  277

Query  295  CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTGTTCAAATGCCAAACGCTCTTCTTG  354
            ||||||||||||||||||||||||||||||||||| |||   | ||||||||||||||||
Sbjct  278  CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTCTTCTGTTTCCAAACGCTCTTCTTG  337

Query  355  AGTTTTGTTACTCTCT--ATCTGTCTCTCTATTGTCTGTAACTGTTTAATTGAACTGCAA  412
            ||||||||||||||||  ||||||||||  ||||||||||||||| |||||||| |||||
Sbjct  338  AGTTTTGTTACTCTCTCTATCTGTCTCT--ATTGTCTGTAACTGTGTAATTGAATTGCAA  395

Query  413  TCGACGGCACCAAATTTACATATTGTCTCTGTACTATATACTATAGATCTTGTCTTCACT  472
            | |||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||
Sbjct  396  TGGACGGCACCAAATTCACATATTGTCTCTGTACTCTA--CTATAGATCTTGTCTTCACT  453

Query  473  ACTAAATCTCAATAAAGTCGAAGCCTTTATC  503
            ||||||||||||||||||| ||| |||||||
Sbjct  454  ACTAAATCTCAATAAAGTCCAAGTCTTTATC  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22301906445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5