BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G58375.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value Ahg495954 jgi|Araly1|495954|fgenesh2_kg.8__1770__AT5G58375.1 689 0.0 > Ahg495954 jgi|Araly1|495954|fgenesh2_kg.8__1770__AT5G58375.1 Length=530 Score = 689 bits (373), Expect = 0.0 Identities = 426/451 (94%), Gaps = 6/451 (1%) Strand=Plus/Plus Query 55 AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCGTTAAGGCT 114 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 38 AAAAACTGGAAAAAGCAAATCAAGAAAAGAGAAGAAGAAGCAGATGTGTCCATTAAGGCT 97 Query 115 TATCCTCATATTCCTTTCAGCGACTCTCGCTGGCTTCTTCGTCCTCCAGAAGCTCAACTC 174 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 98 TATCCTCATATTCCTTTCGGCGACTCTCGCTGGGTTCTTCGTCCTCCAGAAGCTCAACTC 157 Query 175 TACCTCTGACGATCCTCTCGATGATTCCTTCACCGACGCTGAACACGCCGACGACGATTC 234 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || Sbjct 158 TACCTCTGACGATCCTCTCGACGATTCCTTCACCGACGCTGAACCCGCCGACGACGACTC 217 Query 235 AGTCTCTGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA 294 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 AGTCTCCGGATTCTCCAAGGTGGGAATGGCAATGAAGTCTGGATTTTGGACATGCGTTGA 277 Query 295 CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTGTTCAAATGCCAAACGCTCTTCTTG 354 ||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| Sbjct 278 CATGGCAAGTGGTCGCTATCTCTGGAACAATCTCTCTTCTGTTTCCAAACGCTCTTCTTG 337 Query 355 AGTTTTGTTACTCTCT--ATCTGTCTCTCTATTGTCTGTAACTGTTTAATTGAACTGCAA 412 |||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||| Sbjct 338 AGTTTTGTTACTCTCTCTATCTGTCTCT--ATTGTCTGTAACTGTGTAATTGAATTGCAA 395 Query 413 TCGACGGCACCAAATTTACATATTGTCTCTGTACTATATACTATAGATCTTGTCTTCACT 472 | |||||||||||||| |||||||||||||||||| || |||||||||||||||||||| Sbjct 396 TGGACGGCACCAAATTCACATATTGTCTCTGTACTCTA--CTATAGATCTTGTCTTCACT 453 Query 473 ACTAAATCTCAATAAAGTCGAAGCCTTTATC 503 ||||||||||||||||||| ||| ||||||| Sbjct 454 ACTAAATCTCAATAAAGTCCAAGTCTTTATC 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22301906445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5