BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58380.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495955 jgi|Araly1|495955|fgenesh2_kg.8__1771__AT5G58380.1 2761 0.0
Ahg940156 jgi|Araly1|940156|scaffold_600700.1 845 0.0
> Ahg495955 jgi|Araly1|495955|fgenesh2_kg.8__1771__AT5G58380.1
Length=1900
Score = 2761 bits (1495), Expect = 0.0
Identities = 1811/1952 (93%), Gaps = 68/1952 (3%)
Strand=Plus/Plus
Query 1 GTGGACCGCCAATGACGTTTAACTTCGTTTTCAtctcttcttcttc-ttcttcttc---c 56
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1 GTGGACCGCCAATGACGTTTAACTTGGTTTTCATCTCTTCTTCTTCTTTCTTCTTCTTTC 60
Query 57 gtcttctCCTCCA--TTTTTGTTGGTAAACCCAGAAAGAAATAAGG-AAGAGAAGGGGCC 113
|||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 61 TTCTTCTCCTCCATTTTTTTGTTGAAAAACCCAGAAATAAATAAGGAAAGAGAAGGGGCC 120
Query 114 TTTAGGGGCGGATAGAGAGATCTACACGTCTTTCTACT--AGATCTCGGATTCATTCCCA 171
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 121 TTTAGGGGCGGATAGAGAGATCTACACGTCTTTGTACTAGAGATCTCGGATTCATTCCCA 180
Query 172 GAATCCTCTTTCCTCACCGGCTCAATTCTACCAAGTTTCTAAGAGGTTTATTCATATTCG 231
||||||||| || |||||| |||| |||||||||| ||| ||||||||||||||||||
Sbjct 181 GAATCCTCTATCGTCACCGTCTCATTTCTACCAAGACTCTGGGAGGTTTATTCATATTCG 240
Query 232 GCATAGAAACTC-AGAAATGGTGGAGGATGTGTCCTCCTATCACTAGGGGATTAGCTGCA 290
|||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 241 GCATAGAAACTCAAGAAATGCTGGATGATGTGTCCTCCTATCACTAGGGCATTAGCTGCA 300
Query 291 CGAGCTCATGAGG-T-T-ATGACTCATGAGCTACCTCCAACTCTGAGCTATCTCTGGATC 347
||||||||||||| | | ||||||||||||||||| | |||||||||||||||||||| |
Sbjct 301 CGAGCTCATGAGGTTATGATGACTCATGAGCTACCACAAACTCTGAGCTATCTCTGGAGC 360
Query 348 AAGTAGtttttttttttttGGAGCCTGTTATAAGTTTGTAGATTAGATGGAAAATAAGCC 407
|| ||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AACTAG---TGTTTTTTTTGGAGCCTG--ATAAGTTTGTAGATTAGATGGAAAATAAGCC 415
Query 408 AAGTGTTTTGACTGATAAATATGATGTTGGGAGGTTATTGGGTCAAGGTACTTTTGCCAA 467
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGTGTCTTGACTGATAAATATGATGTTGGGAGGTTATTGGGTCAAGGTACTTTTGCCAA 475
Query 468 GGTGTATTATGGAAGGAGTATTCTTACTAACCAGAGTGTTGCTATCAAGATGATCGATAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 GGTGTATTATGGAAGGAGTATTCTTACTAACCAGAGTGTTGCTATCAAGATGATCGACAA 535
Query 528 GGAAAAGGTTATGAAAGTTGGGCTTATCGAACAGATCAAGAGAGAGATCTCTGTTATGAG 587
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGAAAAGGTTATGAAAGTTGGTCTTATCGAACAGATCAAGAGAGAGATCTCTGTTATGAG 595
Query 588 GATTGCTAGACACCCTAACGTTGTGGAGCTATATGAGGTCATGGCAACAAAAACGAGGAT 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 596 GATTGCTAGACACCCTAACGTTGTGGAGCTATATGAGGTCATGGCAACAAAAACAAGGAT 655
Query 648 CTACTTTGTTATGGAGTATTGTAAAGGTGGAGAGCTTTTCAACAAGGTTGCCAAAGGGAA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTACTTTGTTATGGAGTATTGTAAAGGTGGAGAGCTTTTCAACAAGGTTGCCAAAGGGAA 715
Query 708 ATTGAGAGATGATGTTGCTTGGAAATACTTTTATCAGCTTATCAACGCAGTTGATTTTTG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTGAGAGATGATGTTGCTTGGAAATACTTTTATCAGCTTATCAACGCAGTTGATTTTTG 775
Query 768 CCACAGCCGAGAGGTGTATCATCGTGACATAAAGCCGGAGAACCTATTGCTAGATGATAA 827
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 776 CCACAGCCGAGAGGTGTATCATCGTGACATTAAGCCAGAGAACCTATTGCTGGATGATAA 835
Query 828 TGAGAATCTCAAGGTATCTGATTTCGGGTTAAGCGCCCTTGCTGACTGCAAGAGACAAGA 887
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 836 TGAGAATCTCAAGGTATCTGATTTCGGGTTAAGTGCCCTTGCTGACTGCAAGCGACAAGA 895
Query 888 TGGCCTCCTCCACACTACTTGTGGTACACCTGCATATGTTGCTCCAGAAGTGATCAATCG 947
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 896 TGGCCTCCTCCACACTACTTGTGGCACACCTGCATATGTTGCTCCCGAAGTGATCAATCG 955
Query 948 AAAAGGCTATGATGGCACAAAAGCAGATATTTGGTCTTGTGGTGTGGTTTTGTTTGTCCT 1007
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 956 AAAAGGCTATGATGGCACTAAAGCAGATATTTGGTCTTGTGGGGTGGTTTTGTTTGTCCT 1015
Query 1008 ATTGGCAGGCTATCTACCTTTCCATGACTCCAATCTGATGGAGATGTACAGGAAGATAGG 1067
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1016 ATTGGCAGGCTATCTACCTTTCCATGACTCAAATCTGATGGAGATGTACAGGAAGATAGG 1075
Query 1068 AAAAGCAGATTTTAAGGCACCAAGCTGGTTTGCTCCAGAAGTACGGAGGCTGTTGTGTAA 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAAAGCAGATTTTAAGGCACCAAGCTGGTTTGCTCCAGAAGTACGGAGGCTGTTGTGTAA 1135
Query 1128 GATGCTAGACCCTAACCCTGAAACTAGAATCACCATCGCAAGAATCAGGGAGAGTTCTTG 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GATGCTAGACCCTAACCCTGAAACTAGAATCACCATCGCAAGAATCAGGGAGAGTTCTTG 1195
Query 1188 GTTCAGAAAAGGTTTACATATGAAACAGAAAAAGATGGAGAAACGAGTCAAAGAGATAAA 1247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1196 GTTCAGAAAAGGTTTACATATGAAGCAGAAAAAGATGGAGAAACGAGTCAAAGAGATGAA 1255
Query 1248 CTCTGTGGAAGCTGGTACTGCAGGTACAAATGAGAACGGAGCAGGTCCAAGTGAGAATGG 1307
|||||||||||||| | || | | | | || ||||||| |||||| ||
Sbjct 1256 TTCTGTGGAAGCTGG---T----GT-C------G--CAG-GC-GGTCCAAATGAGAACGG 1297
Query 1308 AGCAGGTCCAAGTGAAAACGGAGACAGGGTCACGGAGGAAAACCATACAGACGAACCTAC 1367
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1298 AGCAGGTCCAAGTGAGAACGGAGACAGGGTCACCGAGGAAAACCAAACAGACGAACCTAC 1357
Query 1368 AAATTTGAACGCTTTTGATTTAATTGCCTTGTCTGCTGGGTTTGATCTGGCAGGACTGTT 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1358 AAATTTGAACGCTTTTGATTTAATTGCCTTGTCTGCTGGGTTTGATCTGGCAGGACTTTT 1417
Query 1428 TGGAGA--TG-ATAACAAGAGAGAATCTAGATTCACATCACAGAAACCTGCTTCAGTGAT 1484
|||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1418 TGGAGATGTGTTTAACAAGCGAGAATCTAGATTCACATCCCAGAAACCTGCTTCAGTGAT 1477
Query 1485 CATATCTAAGCTGGAGGAAGTAGCACAGCGATTGAAACTGAGCATAAGAAAGCGAGAAGC 1544
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1478 CATATCTAAGCTGGAGGAAGTAGCACAACGATTGAAACTGAGCATAAGAAAGCGGGAAGC 1537
Query 1545 AGGTTTGTTCAAATTGGAACGATTAAAAGAAGGAAGAAAAGGGATTCTGTCGATGGATGC 1604
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1538 AGGTTTGTTCAAATTGGAACGATTAAAAGAAGGAAGAAAAGGGATTCTATCGATGGATGC 1597
Query 1605 AGAAATATTTCAAGTGACGCCAAACTTTCATTTAGTGGAAGTGAAGAAATCAAATGGAGA 1664
||||||||||||||||||||||| ||||||| |||||||||||||||| || || |||||
Sbjct 1598 AGAAATATTTCAAGTGACGCCAACCTTTCATCTAGTGGAAGTGAAGAAGTCTAACGGAGA 1657
Query 1665 TACTCTCGAGTATCAGAAATTAGTAGCAGAGGATCTTAGACCTGCTCTGTCAGATATTGT 1724
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1658 TACTCTGGAGTATCAGAAATTAGTGGCAGAGGATCTTAGGCCTGCTCTGTCAGATATTGT 1717
Query 1725 ATGGGTTTGGCAGGGTGAGAAAGATGAGCTTACTTCACAGCAAGAGACAGAATACcaaca 1784
||||||||||||||| ||||||||||||| | ||||||||| | || ||
Sbjct 1718 ATGGGTTTGGCAGGGCGAGAAAGATGAGCCTGCTTCACAGC-A-AG--AG---------- 1763
Query 1785 acaacaacaacaagaacaacaagaacaGGAAGAACCATTGAAGTTTTGAAATTTGTTCTT 1844
|| ||||||||||| |||||||||||| | |||||||| || |||||||
Sbjct 1764 ---------AC-AGAACAACAAG---AGGAAGAACCATAGTAGTTTTGATATATGTTCTT 1810
Query 1845 GTCAAGTTTTTGGAATTTTGCTTAACACTGAATCACTGATGTTAATCGTATATGAGTTTC 1904
|||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1811 GTCAAG-TTTT-GAATTTTGCTTAACACTGAATCACTGATGTGAAACGTATATGAGTTTC 1868
Query 1905 TTACATTTTTAATTTGTGGAAAAAAGGAATCC 1936
|||||||||| |||||| |||||||||||||
Sbjct 1869 TTACATTTTTCGTTTGTGAAAAAAAGGAATCC 1900
> Ahg940156 jgi|Araly1|940156|scaffold_600700.1
Length=1417
Score = 845 bits (457), Expect = 0.0
Identities = 731/863 (85%), Gaps = 19/863 (2%)
Strand=Plus/Plus
Query 379 AAGTTTGTAGA--TT-A-GATGGAAAATAAGCCAAGTGTTTTGACTGATAA-ATATGATG 433
||||||||||| || | |||||| || || |||||||| || ||| | || |||||| |
Sbjct 5 AAGTTTGTAGATTTTAAGGATGGAGAACAAACCAAGTGTATTAACT-AAAAGATATGAAG 63
Query 434 TTGGGAGGTTATTGGGTCAAGGTACTTTTGCCAAGGTGTATTATGGAAGGAGTATTCTTA 493
||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct 64 TTGGGAGGTTATTGGGTCAAGGTACTTTTGCTAAAGTTTATTATGGAAGGAGTATTCATA 123
Query 494 CTAACCAGAGTGTTGCTATCAAGATGATCGATAAGGA-AAAGGTTATGAAAGTTGGGCTT 552
| ||| ||||||| |||||||||||||| || ||||| |||| |||||| ||| ||||||
Sbjct 124 CCAACGAGAGTGTAGCTATCAAGATGATTGACAAGGACAAAG-TTATGAGAGTCGGGCTT 182
Query 553 ATCGAACAGATCAAGAGAGAGATCTCTGTTATGAGGATTGCTAGACACCCTAACGTTGTG 612
| ||| || |||||||||||||||||||| |||||||| |||| |||||| || || |||
Sbjct 183 AGCGAGCAAATCAAGAGAGAGATCTCTGTGATGAGGATCGCTAAACACCCGAATGTCGTG 242
Query 613 GAGCTATATGAGGTCATGGCAACAAAAACGAGGATCTACTTTGTTATGGAGTATTGTAAA 672
||| |||| ||||| ||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 243 GAGTTATACGAGGTTATGGCAACAAAGTCGAGGATTTACTTTGTTATTGAGTATTGTAAA 302
Query 673 GGTGGAGAGCTTTTCAACAAGGTTGCCAAAGGGAAA-TTGAGAGATGATGTTGCTTGGAA 731
||||| |||||||||| ||||||||| ||||||||| || ||||| ||||||||||||||
Sbjct 303 GGTGGTGAGCTTTTCACCAAGGTTGCAAAAGGGAAACTT-AGAGAGGATGTTGCTTGGAA 361
Query 732 ATACTTTTATCAGCTTATCAACGCAGTTGATTTTTGCCACAGCCGAG-AGGTGTATCATC 790
|| |||||||||||||| | || ||||||||||| || || || | || ||||||| |
Sbjct 362 GTATTTTTATCAGCTTATTAGCGGGGTTGATTTTTGTCATAGTCGCGGAG-TGTATCACC 420
Query 791 GTGACATAAAGCCGGAGAACCTATTGCTAGATGATAATGAGAATCTCAAGGTATCTGATT 850
| ||||| ||||| ||||| || ||| | ||||| ||||| ||||| ||| |||||||||
Sbjct 421 GCGACATTAAGCCAGAGAATCTGTTGTTGGATGACAATGATAATCTTAAGATATCTGATT 480
Query 851 TCGGGTTAAGCGCCCTTGCTGACTGCAAGAGACAAGATGGCCTCCTCCACACTACTTGTG 910
| || |||||||| |||||||| |||||| | |||||||| || | || || |||||||
Sbjct 481 TTGGTTTAAGCGCGCTTGCTGATTGCAAGCGTCAAGATGGTCTTTTACATACAACTTGTG 540
Query 911 GTACACCTGCATATGTTGCTCCAGAAGTGATCAATCGAAAAGGCTATGATGGCACAAAAG 970
|||||||||| |||||||| || || || || || |||||||| |||||||| || ||||
Sbjct 541 GTACACCTGCTTATGTTGCGCCCGAGGTTATTAACCGAAAAGGATATGATGGTACGAAAG 600
Query 971 CAGATATTTGGTCTTGTGGTGTGGTTTTGTTTGTCCTATTGGCAGGCTATCTACCTTTCC 1030
| |||||||||||||||||||| || |||||||| || ||||| || ||||| |||||||
Sbjct 601 CGGATATTTGGTCTTGTGGTGTTGTCTTGTTTGTTCTTTTGGCTGGTTATCTCCCTTTCC 660
Query 1031 ATGACTCCAATCTGATGGAGATGTACAGGAAGATAGGAAAAGCAGATTTTAAG-G-CACC 1088
||||||| ||||| ||||||||||| ||||||||||| |||||||| || ||| | | ||
Sbjct 661 ATGACTCTAATCTAATGGAGATGTATAGGAAGATAGGTAAAGCAGAGTTCAAGTGTC-CC 719
Query 1089 AAGCTGGTTTGCTCCAGAAGTACGGAGGCTGTTGTGTAAGATGCTAGACCCTAACCCTGA 1148
| |||||||||| || |||||| ||| || |||||||||||| | |||||||||| |||
Sbjct 720 A-GCTGGTTTGCCCCTGAAGTAAAGAGACTATTGTGTAAGATGTTTGACCCTAACCATGA 778
Query 1149 AACTAGAATCACCATCGCAAGAATCAGGGAGAGTTCTTGGTTCAGAAAAGGTTTACATAT 1208
||||||||||| || |||| ||||| ||||||||||||||||||||||||||| ||| |
Sbjct 779 GACTAGAATCACTATTGCAAAAATCAAGGAGAGTTCTTGGTTCAGAAAAGGTTTGCATTT 838
Query 1209 GAAACAGAAA-AAGATGGAGAAA 1230
||| || ||| |||||||| |||
Sbjct 839 GAAGCA-AAAGAAGATGGA-AAA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5