BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58390.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950547 jgi|Araly1|950547|scaffold_802434.1 403 1e-111
Ahg917563 jgi|Araly1|917563|Al_scaffold_0008_2314 283 2e-75
> Ahg950547 jgi|Araly1|950547|scaffold_802434.1
Length=469
Score = 403 bits (218), Expect = 1e-111
Identities = 321/371 (87%), Gaps = 6/371 (2%)
Strand=Plus/Plus
Query 624 CATGGTCGCCCTCTCTGGTGCTCACACCATTGGACGAGCCCAATGTGTTACATTCAGAAA 683
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 20 CATGGTCGCCCTCTCTGGTGCTCACACCTTTGGACGAGCCAAATGTGTTACATTTAGAAA 79
Query 684 CCGAATCTACAACGCAAGCAATATCGACACCTCTTTCGCCATCTCTAA-ACGGAGGAACT 742
||| |||||||||| ||| || ||||||||||||||||| ||||| || ||||| || |
Sbjct 80 CCGTATCTACAACGAAAGTAACATCGACACCTCTTTCGCTATCTC-AAGACGGAAGAGTT 138
Query 743 GTCCTGCCACCAGTGGCTCCGGAGACAACAAGAAAGCCAATCTTGACGTCCGCTCTCCCG 802
|||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 139 GTCCAGCCGCCAATGGCTCCGGAGACAACAAGGAAGCCAATCTTGACGTCCGCACTCCTG 198
Query 803 ATAGGTTCGACCACGGCTTCTACAAGCAACTTCTGAGCAAAAAAGGTTTGCTTACGTCAG 862
|||||||||||||| || ||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 199 ATAGGTTCGACCACAACTACTATAAGCAACTTCTCAGCAATAAGGGTTTGCTTACGCCAG 258
Query 863 ACCAAGTCCTCTTTAATAATGGTCCTACCGACTCGCTCGTCATAGCTTACAGCCACAATC 922
||||||||||||||||||| ||||| ||||||||| ||||| || | ||||||| | |
Sbjct 259 ACCAAGTCCTCTTTAATAACGGTCCCACCGACTCGATCGTCGTATCCTACAGCCGGAGTG 318
Query 923 TCAATGCCTTCTACCGCGACTTT-GCAAGGGCAATGATTAAGATGGG-AGACATCAGCCC 980
|| | ||||||||||||| ||| | || ||| ||||| || ||||| | ||||||||||
Sbjct 319 TCCGTTCCTTCTACCGCGA-TTTCGTAACGGCGATGATAAAAATGGGCA-ACATCAGCCC 376
Query 981 CCTCACCGGAT 991
||||||||||
Sbjct 377 ACTCACCGGAT 387
> Ahg917563 jgi|Araly1|917563|Al_scaffold_0008_2314
Length=363
Score = 283 bits (153), Expect = 2e-75
Identities = 177/189 (94%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 283 TGTGACGGATCCTTACTGTTGGATGACACACCGTCTTTTTTGGGAGAGAAAACCTCAGGA 342
|||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct 154 TGTGACGGATCCATACTATTGGACGACACACCGTCATTTTTGGGAGAGAAAACCGCGGGA 213
Query 343 CCCAGCAATAACTCTGTGAGGGGGTTCGAAGTGATCGACAAAATCAAGTTTAAGGTTGAG 402
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 CCCAGCAATAAGACTGTGAGGGGGTTCGAAGTGATCGACAAAATCAAGTTTAAGATTGAG 273
Query 403 AAAATGTGCCCGGGCATCGTCTCATGCGCAGACATTCTAGCCATCACTGCTCGGGACTCC 462
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 274 AAAATGTGCCCGGGCATCGTCTCATGCGCAGACATTCTCGCCATCACTGCTCGCGACTCT 333
Query 463 GTTCTCCTC 471
|||||||||
Sbjct 334 GTTCTCCTC 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5