BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58420.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1 1640 0.0
Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1 1022 0.0
Ahg931590 jgi|Araly1|931590|scaffold_304047.1 989 0.0
> Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1
Length=1014
Score = 1640 bits (888), Expect = 0.0
Identities = 972/1013 (96%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 52 ACAGGTAGTTCGGATCGGAGCTACGCTTGCAAAACTCAAAACATGGCGAGGGGTTTGAAG 111
||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACAAGTAGTTCGGATCAGAGCTACGCTTGCAAATCTCAAAACATGGCGAGGGGTTTGAAG 60
Query 112 AAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCA 171
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCA 120
Query 172 TTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCAAGGGAGTGCCTTCCCCTCGTCCTT 231
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 TTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCGAGGGAGTGCCTTCCCCTTGTCCTT 180
Query 232 ATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACCGTGAAGTGATTTCAATCTTGATG 291
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 ATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACCGTGAAGTGATTTCTATCTTGATG 240
Query 292 CAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACGGACAAGACCTACCCTGCTGGTTTC 351
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACTGACAAGACCTACCCTGCTGGTTTC 300
Query 352 ATGGATGTTGTGTCTATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTATGATACCAAG 411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGATGTTGTGTCTATCCCTAAGACCAATGAGAACTTCCGTCTTCTCTATGATACCAAG 360
Query 412 GGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAAGCAAAGTTCAAACTTTGCAAGGTT 471
|| |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 361 GGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAAGCACAGTTCAAGCTTTGCAAGGTC 420
Query 472 CGATCTATCCAGTTTGGACAGAAAGGCATTCC-TTACCTGAACACTTACGATGGTCGCAC 530
||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct 421 CGATCTATCCAGTTTGGACAGAAGGGCATTCCATT-CCTGAACACATACGATGGTCGCAC 479
Query 531 CATCCGTTACCCTGACCCGCTCATCAAGCCTAATGACACCATCAAGCTCGACCTTGAGGC 590
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATCCGTTACCCTGACCCTCTCATCAAGCCTAATGACACCATCAAGCTCGACCTTGAGGC 539
Query 591 CAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGGCAATGTTGTGATGGTTACAGGAGG 650
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 540 CAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGCAATGTTGTGATGGTCACAGGAGG 599
Query 651 TAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGTGAGAAGCATAAGGGAAGCTTTGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGTGAGAAGCATAAGGGAAGCTTTGA 659
Query 711 GACAATCCACATCCAAGATTCAACAGGACATGAGTTTGCAACAAGGTTGGGTAATGTGTA 770
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 660 GACAATCCACATCCAAGACTCAACAGGACATGAGTTTGCAACAAGGTTGGGGAATGTGTT 719
Query 771 CACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCTTCCCAAGGGCAAAGGTATCAAGCT 830
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 720 CACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCT 779
Query 831 GACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAGTCAACAGGCTGCTTAATTTTGTGA 890
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 GACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGTCAACAGGCTGCTTAATTTTGTGA 839
Query 891 TTTTCAGTTCT-T-TGTTATGCTTCTTTAGACGTTTCATATTTCCTAGACTCACTTCGTT 948
||| ||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 TTTCCAGTTCTCTATATTATGCTTCCTTAGACGTTTCATATTTCCTAGACTCACTTCGTT 899
Query 949 TCTTTTGGTACTCTGCTCAGTTTTGAAACTTCTCTTATATTATTTATTTCAAGAGTTAAA 1008
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 TCTTTTGGTACTCTGCTCAGTTTTGAAACTTCTGTTATATTATTTATTTCAAGAGTTAAA 959
Query 1009 AACATCAAATATCCATTGTGTCCTCTCTTGTTTTTTACTATCTTCAAGAGTTG 1061
||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 960 AACTTCAAACATCCATTGTGTTCTCTCTTGTTTTCTACTATCTTCAAGAGTTG 1012
> Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1
Length=1097
Score = 1022 bits (553), Expect = 0.0
Identities = 716/796 (90%), Gaps = 6/796 (1%)
Strand=Plus/Plus
Query 90 AAACATGGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGAT 149
||||||||| || || |||||||||||||| |||||| | ||||| ||||||||||||||
Sbjct 27 AAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGATCAATGCTCCTAAGCATTGGAT 86
Query 150 GCTTGACAAACTTGGTGGTGCATTTGC-CCCAAAGCCGTCTTCTGGACCACATAAGTCAA 208
||||||||||||||||||||| || || |||||| || ||||||||||| || ||||| |
Sbjct 87 GCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA-CCATCTTCTGGACCTCACAAGTCGA 145
Query 209 GGGAGTGCCTTCCCCTCGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTT-ACCTAC 267
||||||| ||||| || ||||| ||||||||||||||||||||||||||| || || |||
Sbjct 146 GGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATGCT-TTGACTTAC 204
Query 268 CGTGAAGTGATTTCAATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACG 327
|||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 205 CGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTTAGGACT 264
Query 328 GACAAGACCTACCCTGCTGG-TTTCATGGATGTTGTGTCTATCCCCAAGACCAATGAGAA 386
|||||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 265 GACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGTATCCATCCCCAAGACCAATGAGAA 323
Query 387 CTTCCGTCTTCTCTATGATACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGA 446
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 324 CTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGA 383
Query 447 AGCAAAGTTCAAACTTTGCAAGGTTCGATCTATCCAGTTTGGACAGAAAGGCATTCCTTA 506
| |||||||||| |||||||||||| |||||||||||||||| ||||| || |||||||
Sbjct 384 ATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTCCTTT 443
Query 507 CCTGAACACTTACGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCTAATGA 566
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 444 CTTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAAACGA 503
Query 567 CACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGG 626
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 504 CACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACGTGGG 563
Query 627 CAATGTTGTGATGGTTACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCG 686
||||||||||||||||| ||||| |||||||||||||||||||| ||||| || |||||
Sbjct 564 TAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGGGCGTGTTGGCGTGATCAAGAACCG 623
Query 687 TGAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGATTCAACAGGACATGAGTT 746
|| ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 624 GGAAAAGCATAAGGGAAGCTTTGAGACGATACACATTCAAGACTCAACAGGACATGAGTT 683
Query 747 TGCAACAAGGTTGGGTAATGTGTACACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCT 806
||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 684 TGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAAAGGAACAAAGCCATGGGTGTCTCT 743
Query 807 TCCCAAGGGCAAAGGTATCAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAG 866
||| |||||||||||||| |||||||| ||||| ||||| || |||||||| ||||||
Sbjct 744 TCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCTAGGAAGAGACTTGCTTC 803
Query 867 TCAACAGGCTGCTTAA 882
||||| |||||||||
Sbjct 804 ACAACAAGCTGCTTAA 819
> Ahg931590 jgi|Araly1|931590|scaffold_304047.1
Length=914
Score = 989 bits (535), Expect = 0.0
Identities = 706/790 (89%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 90 AAACATGGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGAT 149
||||||||| || ||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct 104 AAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCATTGGAT 163
Query 150 GCTTGACAAACTTGGTGGTGCATTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCAAG 209
|||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct 164 GCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAG 223
Query 210 GGAGTGCCTT-CCCCTCGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACC 268
|||||| || ||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 224 GGAGTG-TTTACCCCTGGTTCTTATCATCAGGAACAGGTTGAAGTATGCCCTTACATACA 282
Query 269 GTGAAGTGATTTCAATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACGG 328
| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 283 GAGAAGTGATCTCGATCTTGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGAGGACTG 342
Query 329 ACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAGACCAATGAGAACT 388
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 343 ACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCAAAAACAAATGAGAACT 402
Query 389 TCCGTCTTCTCTATGATACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAAG 448
|||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 403 TCCGTCTTTTGTATGACACCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATGAGGAAG 462
Query 449 CAAAGTTCAAACTTTGCAAGGTTCGATCTATCCAGTTTGGACAGAAAGGCATTCC-TTAC 507
| |||||||| ||||||||||| |||| ||||||||||| ||||| |||||||| || |
Sbjct 463 CGAAGTTCAAGCTTTGCAAGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTCCGTT-C 521
Query 508 CTGAACACTTACGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCTAATGAC 567
||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 522 TTGAACACATATGATGGTCGCACCATCCGTTACCCCGACCCGCTCATCAAGCCTAACGAC 581
Query 568 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGGC 627
||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 582 ACCATCAAGCTTGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGC 641
Query 628 AATGTTGTGATGGTTACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 687
||||| || ||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 642 AATGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGT 701
Query 688 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGATTCAACAGGACATGAGTTT 747
||||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 702 GAGAAACACAAGGGAAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTT 761
Query 748 GCAACAAGGTTGGGTAATGTGTACACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCTT 807
|| ||||||||||| ||||||| ||| || || ||||||||||||||||||||||||||
Sbjct 762 GCTACAAGGTTGGGAAATGTGTTCACAATCGGGAAAGGAACAAAGCCATGGGTGTCTCTA 821
Query 808 CCCAAGGGCAAAGGTATCAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAG- 866
|| |||||||||||||| ||| |||| ||||| ||||| ||||||||||| ||| || |
Sbjct 822 CCAAAGGGCAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCT-GC 880
Query 867 TCAACAGGCT 876
|||||| |||
Sbjct 881 TCAACAAGCT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5