BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58430.1
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950552 jgi|Araly1|950552|scaffold_802439.1 3014 0.0
> Ahg950552 jgi|Araly1|950552|scaffold_802439.1
Length=1916
Score = 3014 bits (1632), Expect = 0.0
Identities = 1815/1904 (95%), Gaps = 9/1904 (0%)
Strand=Plus/Plus
Query 92 TTCCACATCTGT-TTCAATCATGGCGGAGAATGGTGAAGAGAAGTTACTTGCTGTTGCGC 150
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4 TTCCAC--CTGTGTTCAATCATGGCGGAGAATGGTGAAGAGAAATTACTTGCTGTTGCGC 61
Query 151 GTCACATAGCCAAAACACTTGGCCACAATGAATCCATGGCCGATGATATCTTACAGATCT 210
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 62 GTCACATAGCCAAAACACTTGGCCATAACGAATCCATGGCCGATGATATCTTACAGATCT 121
Query 211 TCTCCAACTTCGACGGCAGATTTTCTCGCGAGAAGCTCGCCGAAGGTCAAGCTGGAGAAG 270
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 122 TCTCCAACTTCGACGGCAGATTTTCTCGCGAAAAGCTCGCTGAAGGTCAAGCTGGAGAAG 181
Query 271 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 241
Query 331 GCTTTGTTGCTGCGGACCAACCAATTTGGGCTGATCCTGCAGATTCAGCTGCTTTCCTCG 390
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 242 GCTTTGTTGCCGCGGATCAACCTATTTGGGCTGATCCTGCTGATTCAGCTGCTTTCCTCG 301
Query 391 ACACAATCGATGAGCTCGTTGCAATCATTAGAGAGTGGAGTCCCATGGCTTCAGAGAAAC 450
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 302 ACACAATCGATGAGCTCGTTGCTATCATCAGAGAGTGGAGTCCCATGGCTTCAGAGACAC 361
Query 451 CTATCGGCATCTGTCTAACACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 510
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTATCGGCGTCTGTCTAGCACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 421
Query 511 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTC-TTTCGGACTTAA-TCCTCA 568
|||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||
Sbjct 422 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTCGTTT-GG-CTTAAATCCTCA 479
Query 569 GGGAGACGCTGGTGCGATGAATCATCGTTTCGATTCTGAGGAAGAAGAAGATGATGACAG 628
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 480 GGGAGACGCTGATGCGATGAATCATCGTTTCGACTCTGAGGAAGAAGATGATGATGACAG 539
Query 629 AGACTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 688
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGATTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 599
Query 689 TCTTATCATTGATGCTCTCCCTTCGGCGACAATTAACGATCTACACGAGATGGCTAAGCG 748
||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TCTTATCATCGATGCCCTCCCGTCGGCGACAATTAACGATCTACATGAGATGGCTAAGCG 659
Query 749 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 719
Query 809 GTTTCTGGAAGAAAGTATGTCAAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 868
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTTTGGAAGAAAGCATGTCGAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 779
Query 869 TAAGATGCCGTGGCAGGAGTTAGAAGATGAGATAGATAGGTGGATCAAAGCTGCTAACGT 928
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 780 TAAGATGCCGTGGCAGGAGCTAGAGGATGAGATAGATAGGTGGATTAAAGCTGCTAACGT 839
Query 929 TGCTCTAAGAATCCTGTTTCCTAGCGAACGTAGACTCTGTGACCGTGTCTTCTTCGGTTT 988
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 840 CGCTCTAAGAATCCTCTTTCCGAGCGAACGTAGACTCTGTGACCGCGTTTTCTTCGGTTT 899
Query 989 CTCCTCTGCTGCTGATCTTTCGTTTATGGAGGTTTGTCGTGGCTCTACCATTCAGCTTCT 1048
|||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 900 CTCCTCTGCTGCTGATCTCTCATTCATGGAGGTATGTCGTGGCTCTACCATTCAGCTTCT 959
Query 1049 GAATTTCGCAGACGCGATTGCTATTGGAAGCAGATCGCCTGAGAGATTGTTTAAAGTGCT 1108
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 960 GAATTTCGCAGACGCGATTGCTATTGGAAGCCGGTCGCCTGAGAGATTGTTTAAAGTGCT 1019
Query 1109 TGATGTGTTTGAGACAATGAGGGATTTGATGCCTGAATTTGAGTCTGTGTTCTCGGATCA 1168
|||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1020 TGATGTATTCGAGACAATGAGGGATTTGATGCCTGAGTTCGAGTCTGTGTTCTCGGATCA 1079
Query 1169 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTAACTATTTGGAAACGGTTGGGAGAGGCGAT 1228
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1080 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTTACCATTTGGAAACGATTGGGAGAGGCGAT 1139
Query 1229 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCTAAAGCTGCGGT 1288
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCCAAAGCTGCGGT 1199
Query 1289 TCCGGGCGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCTTG 1348
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 TCCAGGTGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCGTG 1259
Query 1349 TAGATCCCGGCAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGTGTCCCTTCTAAAGA 1408
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 CAGATCCCGACAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGCGTCCCTTCTAAAGA 1319
Query 1409 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1379
Query 1469 AGTAAAATCTAAAGTGTACAAAGATCCAGCTTTGTGCTATGTGTTTCTGATGAATAATGG 1528
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1380 AGTAAAATCCAAAGTGTACAAAGATCCAGCCTTGTGCTATGTGTTTCTGATGAACAACGG 1439
Query 1529 GAGATACATTGTTCAGAAAGTCAAAGATGGAGACCTAGGATTGCTGTTAGGAGATGATTG 1588
|||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 1440 GAGATACATTGTTCAGAAGGTGAAGGATGGAGACCTAGGATTGCTCTTAGGAGATGATTG 1499
Query 1589 GATTCGGAAACACAATGTCAAAGTGAAACAATACCATATGAATTATCAGAGAAGCTCATG 1648
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1500 GATTCGGAAACACAATGTCAAAGTGAGACAATACCATATGAATTATCAGAGAAGCTCATG 1559
Query 1649 GAATAAGATGCTGGGGTTGCTGAAGGTGGATAATACTGCAGCAGGCATGAACGGTTTGGG 1708
|||||||||||||||||| ||||||||||| ||||| || | |||||||| |||||||||
Sbjct 1560 GAATAAGATGCTGGGGTTACTGAAGGTGGACAATACAGCGGAAGGCATGAGCGGTTTGGG 1619
Query 1709 GAAGACCATGAAGGAGAAGCTGAAGCAGTTCAATATTCAGTTTGATGAGATATGTAAAGT 1768
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1620 GAAAACCATGAAGGAGAAGCTGAAGCAGTTCAATATCCAGTTTGATGAGATATGTAAAGT 1679
Query 1769 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAAAGAAGAGCT-AAAGATCTCACTGG 1827
||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||
Sbjct 1680 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAGAGAGGAGCTGAAA-ATCTCACTGG 1738
Query 1828 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGCAGGTTCCAAAACCTTGGAGACA 1887
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1739 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGAAGGTTCCAAAACCTTGGAGACA 1798
Query 1888 TAGGGAAAAACGCAGACAAGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGTATTA 1947
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 1799 TAGGGAAAAACGCGGACAGGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGAATCA 1858
Query 1948 ACGAGCTGTTCAAAGGGACTACCACGGGAAGAAAATGAAGGTAA 1991
||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 1859 ACGAGCTTTTCAAAGGGACAACCACAGGAAGAAAATGAAGGTAA 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85169787820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5