BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58440.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1 3116 0.0
Ahg947345 jgi|Araly1|947345|scaffold_703574.1 311 2e-83
> Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1
Length=2085
Score = 3116 bits (1687), Expect = 0.0
Identities = 1973/2103 (94%), Gaps = 52/2103 (2%)
Strand=Plus/Plus
Query 1 CGTCGCTCAGCGTCACATTTCAGGGGATCTCCGTTTGTTCCCAAATCATCAAACCCTAAT 60
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1 CGTCGCTCAGCGTCACATTTCAGGGGATCTCCGTTTCTTCCCAAATCACCAAACCCTAAA 60
Query 61 TTTCTGTTAATTTCAATTAGCTTAGTTCGTCGTTACTCCAGAGAAGTCGAAATGATGGGC 120
|||||| | | | | || ||||||||| ||||||||||||||
Sbjct 61 TTTCTG------T--A--A----A--------TT--TCCAGAGAATTCGAAATGATGGGC 96
Query 121 TCAGAGAATGCCGATGGATTCGAAGAAACTAATCTCAATGCGCAAAGGGATGATATGGAG 180
|||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||
Sbjct 97 TCAGAGAATGCCGATGGATTCGAAGAGACTAATCTCAACGCGCCGAGGGAGGATATGGAG 156
Query 181 AATCTCGACCTAGGAGTAGATGGTGGTGACCATCCTCTGAAGATAAGCGATGTCAACGGT 240
||||||||||||||||| ||||| | |||| |||||||||||| || |||||||||||||
Sbjct 157 AATCTCGACCTAGGAGTTGATGGCGATGACGATCCTCTGAAGAAAACCGATGTCAACGGT 216
Query 241 GATACATCGAACTCTGGTTACCGTAGCGCCATGTCAACACTCTCCAACGTCCGTGACCCG 300
|||||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||
Sbjct 217 GATACATCGAACTCTGGTTATCGTAGCACCATGTCAACACTCTCCACCGTGCGTGACCCA 276
Query 301 CTCTCGCCGCCACCGACCGTTATGATTCCAGCTGATTCTGATCCACTCCTTGCGCCATCC 360
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 277 CTCTCGCCGCCACCGACCGTCATGATTCCGGCTGATTCTGATCCACTCCTTGCGCCATCC 336
Query 361 TCCTACGAAGATTTCCGCAGCAGCTTCAGCTCTAAGCCGATCAGCAGCGATAACTCCTAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TCCTACGAAGATTTCCGCAGCAGCTTCAGCTCTAAGCCGATCAGCAGCGATAACTCCTAC 396
Query 421 ATCGAGCCTCCGTCGTATGCAGATGTTATCTTCAGTCCCTTTGATGAGAACTCAGATAGC 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATCGAGCCTCCGTCTTATGCAGATGTTATCTTCAGTCCCTTTGATGAGAACTCAGATAGC 456
Query 481 GAGATTAACGGTACCGAGGATAATAGCCTTCATAGTCAATTCTCAGATTCACTATCGAGA 540
||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 457 GAGATTAACGGCGCCGATGATAGTAGCCTTCATAGTCAATTCTCAGATTCACTATCGAGA 516
Query 541 TCTCCTTCTTCTTCAAGCTCTGATTACATCAAGATCACTGTATCTAACCCTCAGAAAGAG 600
||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 517 TCTCCTTCTTCGTCTAGCTCTGATTACATTAAGATCACTGTATCGAACCCTCAGAAAGAG 576
Query 601 CAGGAGATTTCAAATTCCATTGTTGGAGGAAACACTTACATCACCTACCAAATTACGACC 660
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 577 CAGGAGACTTCAAATTCCATTGTTGGAGGAAACACTTATATCACCTACCAAATTACGACC 636
Query 661 AGAACGAATCTCCCTGACTTTGGCGGCCCATCGGAGTTTAGCGTGCGAAGAAGATTCAGA 720
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 637 AGAACGAATCTCCCTGACTTCGGTGGCCCATCGGAGTTTAGCGTGCGAAGAAGATTCAGA 696
Query 721 GATGTTGTCACATTGGCTGATCGATTGGCTGAGACGTATAGAGGGTTCTGCATACCACCA 780
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 697 GATGTTGTCACATTGGCAGATCGATTGGCTGAGTCGTATAGAGGGTTCTGCATACCACCA 756
Query 781 CGGCCAGATAAGAGCGTCGTAGAGAGCCAAGTAATGCAGAAACAAGAGTTCGTGGAGCAG 840
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CGGCCGGACAAGAGCGTCGTAGAGAGCCAAGTAATGCAGAAACAAGAGTTCGTGGAGCAA 816
Query 841 AGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCTAAGTGCACACCCTGTTATTAGGAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 817 AGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCTAAGTGCACACCCTGTTATCAGGAAC 876
Query 901 AGTGACGAGTTGAAAGTGTTTCTTCAGGTGCAAGGGAAGTTGCCACTACCAATGAGTACT 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 877 AGTGACGAGTTGAAAGTGTTTCTTCAGGTTCAAGGGAAGTTGCCACTACCAATGAGTACT 936
Query 961 GATGTGGCCTCTCGGATGTTGGATGGGGCGGTGAAGCTCCCAAAACAGTTGTTCGGTGAA 1020
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 937 GATGTGGCCTCTCGGATGTTGGATGGCGCGGTGAAGCTCCCAAAACAGTTGTTTGGTGAA 996
Query 1021 GGCGGAGCCTCTGCAGTGCCGGTGAC-TGAGGTGGGTCAGCCTGCAAGAGGAGGTAGGGA 1079
|||||||||||||| ||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct 997 GGCGGAGCCTCTGCGGTGCCAGTG-CATGAGGTGGTTCAGCCTGCAAGAGGAGGTAGGGA 1055
Query 1080 TCTGCTGAGATTATTCAAGGAGCTGAGGCAGTCAGTTTCTAATGACTGGGGTGGATCAAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TCTGCTGAGATTATTCAAGGAGCTGAGGCAGTCAGTTTCTAATGACTGGGGTGGATCAAA 1115
Query 1140 ACCTCCCGTTGTTGAAGAAGATAAAGAGTTCTTGGAAAAGAAGGAGAAGATGCATGATCT 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1116 ACCTCCCGTTGTTGAAGAAGATAAAGAATTCTTGGAAAAGAAGGAGAAGATGCATGATCT 1175
Query 1200 TGAGCAGCAAATTATCAATGCCTCACAGCAGGCGGAATCCCTTGTGAAAGCACAGCAAGA 1259
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1176 TGAGCAGCAAATTATCAATGCCTCACAGCAGGCAGAATCCCTTGTGAAGGCACAGCAAGA 1235
Query 1260 CATGGGTGAAACCATGGGTGAACTGGGATTAGCATTCATTAAGCTGACTAAGTTCGAGAA 1319
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1236 CATGGGGGAAACCATGGGTGAACTGGGATTAGCATTCATAAAGCTGACTAAGTTCGAGAA 1295
Query 1320 CGAGGAAGCTGTC-TGCAACCCCCAAAGAACTCGTGCTAATGATATGAAGAATTTAGCCA 1378
||| ||||||| | | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1296 CGAAGAAGCTG-CTTACAACTCTCAAAGAACTCGTGCTAATGATATGAAGAATTTAGCCA 1354
Query 1379 CTGCTGCTGTAAAAGCAAGCAGATTTTATAGGGAGTTGAATTCCCAAACTGTCAAACACT 1438
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTGCGGCTGTAAAAGCAAGCAGATTTTATAGGGAGTTGAATTCCCAAACTGTCAAACACT 1414
Query 1439 TGGACACACTCCATGAGTACCTTGGCATGATGATGGCTGTCCAAGGCGCATTTGCAGATA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TGGACACACTCCATGAGTACCTTGGCATGATGATGGCTGTCCAAGGCGCATTTGCAGATA 1474
Query 1499 GATCTAGTGCTTTACTGACAGTTCAGACGCTTCTATCAGAGCTTCCTTCTCTGCAAACTA 1558
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1475 GATCTAGTGCTTTACTGACTGTTCAGACGCTTCTGTCAGAGCTTCCTTCGCTGCAAACTA 1534
Query 1559 GAGTTGAGAAGCTAGAGGCTGCATCATCGAAGGTATTTGGTGGTGACAAATCAAGGATCC 1618
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1535 GAGTCGAAAAGCTAGAGGCTGCATCATCGAAGGTATTTGGCGGTGACAAATCAAGGATCC 1594
Query 1619 GAAAAATAGAAGAGTTAAAAGAAACAATCAAGGTCACTGAGGATGCAAAAAATGTTGCCA 1678
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1595 GAAAAATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAGGACGCAAAAAATGTTGCCA 1654
Query 1679 TCAAAGGGTATGAGCGAATCAAGGAAAACAACCGATCTGAGGTTGAGAGGTTGGACAGAG 1738
||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TCAGAGAATACGAGCGGATCAAGGAAAACAACCGATCTGAGGTTGAGAGGTTGGACAGAG 1714
Query 1739 AAAGGCGTGCAGACTTCATGAACATGATGAAGGGTTTTGTTGTTAACCAGGTTGGATACG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 AAAGGCGTGCAGACTTCATGAACATGATGAAGGGTTTTGTTGTTAACCAGGTTGGATACG 1774
Query 1799 CAGAGAAAATGGGAAACGTCTGGGCAAAGGTTGCAGAAGAGACCAGCCAATACGATAGAG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 CAGAGAAAATGGGAAACGTCTGGGCAAAGGTTGCAGAAGAGACCAGCCAATACGATAGAG 1834
Query 1859 AGAAGCAGAGCAGCTAACAAACACAGaaaaaaa------GAGAGTGAACGATGTTCATTT 1912
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1835 AGAAGCAGAGCAGCTAACAAACACAGAAAAAAAAAAAAAGAGAGTGAATGATGTTCATTT 1894
Query 1913 TGGCATAACCATA--CCAAATCCATGTATGGCACAGAATCACATTGCGTAATAATGGTTT 1970
||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 1895 TGGCATAACCATATACCAATTCCATGTTTGGCACAGAATCACATTGCGTAATAATGGGT- 1953
Query 1971 GTCAAAAAGTGTAGTTTCCTTTTTC--A--TATGTTGTATCTATCTTGATAGAGATTGGT 2026
||| ||||||||||||||| | |||||||||||||||| ||||||| |||||
Sbjct 1954 GTC------TGTAGTTTCCTTTTTTTTACGTATGTTGTATCTATCT-GATAGAGTTTGGT 2006
Query 2027 AAACGTTCTTGTTTGTT-TTCTTTAGT-TGCTGTAAATTAGTTTTCTAGAAGCATCTCTG 2084
|||||||||| |||||| || |||||| | ||||||||||| ||||||||||||||||||
Sbjct 2007 AAACGTTCTTCTTTGTTGTT-TTTAGTCT-CTGTAAATTAGATTTCTAGAAGCATCTCTG 2064
Query 2085 ACT 2087
|||
Sbjct 2065 ACT 2067
> Ahg947345 jgi|Araly1|947345|scaffold_703574.1
Length=523
Score = 311 bits (168), Expect = 2e-83
Identities = 223/249 (90%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 817 CAG-AAACAAGAGTTCGTGGAGCAGAGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCT 875
||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 62 CAGTAAACAAGAGTTTTTGGAGCAGAGAAGAGTTGTATTGGAGAAATACTCGCGCAGGCT 121
Query 876 A-AGTGCACACCCTGTTATTAGGAACAGTGACGAGTTGAAAGTGTTTCTTCAGGTGCAAG 934
| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 122 ATA-TGCACACCCTGTTATTAGGAACAGTGAAGAGTGGAAAGTGTTTCTTCAGGTGCAAG 180
Query 935 GGAAGTTGCCACTACCAATGAGTACTGATGTGGCCTCTCGGATGTTGGATGGGGCGGTGA 994
|||||||||||||||||||| | ||| ||||||||||| ||||||||||||| | |||||
Sbjct 181 GGAAGTTGCCACTACCAATGGGCACTAATGTGGCCTCTAGGATGTTGGATGGCGTGGTGA 240
Query 995 AGCTCCCAAAACAGTTGTTCGGTGAAGGCGGAGCCTCTGCAGTGCCGGTG-ACTGAGGTG 1053
|||| || ||||||||||| ||||| ||| |||||||||| ||||| ||| | ||||||
Sbjct 241 AGCTTCCGAAACAGTTGTTTGGTGACGGCAGAGCCTCTGCCGTGCCAGTGCA-TGAGGTA 299
Query 1054 GGTCAGCCT 1062
| |||||||
Sbjct 300 GTTCAGCCT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5