BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58460.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495963 jgi|Araly1|495963|fgenesh2_kg.8__1779__AT5G58460.1 3892 0.0
Ahg330263 jgi|Araly1|330263|fgenesh1_pm.C_scaffold_7002490 2388 0.0
> Ahg495963 jgi|Araly1|495963|fgenesh2_kg.8__1779__AT5G58460.1
Length=2583
Score = 3892 bits (2107), Expect = 0.0
Identities = 2436/2593 (94%), Gaps = 29/2593 (1%)
Strand=Plus/Plus
Query 1 ATGGTTAGGTCTTTCCCAAGTGATGGCTGGAGTGCCCTGCCTACCCGTTTTGGGTTCTGG 60
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTTAGGTATTTCCCAAGTGATGACTGGAGTGCCCTGCCTACCCGTTTCGGGTTCTGG 60
Query 61 CCAGAGAATCCAACCACCGCCGGAGTGGTCAGCAGTCGTGTTTTCTCAGCCAGACTTCCG 120
|| | ||||||||||||| |||||||||||||||| ||||||||||| || |||||||||
Sbjct 61 CCGGGGAATCCAACCACCACCGGAGTGGTCAGCAGCCGTGTTTTCTCTGCTAGACTTCCG 120
Query 121 GAGGTTTGCCGACAGGTTCACGATAAGCAGCCGTTCGGAATGTTCAAAGGCGAAAATGGC 180
| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGTTTGTCGACAGATTCACGATAAGCAGCCGTTCGGAATGTTCAAAGGCGAAAATGGC 180
Query 181 ATGAACTACACATTTTCAACCTTTTTGATCGAAGCAATACTCATCATTTTCTTCATCAAA 240
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 ATGAACTACACATTTTCAACATTTTTGATCGAAGCAATACTCATCATTTTGTTCATCAAA 240
Query 241 ATTGTTTACGTCCTCCTTCGACCTCTTCGCCAACCTCGTATAGTCTGCGAGATCATTGGT 300
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ATTGTTTACTTCCTCCTTCGACCTCTTCGTCAACCTCGTATAGTCTGCGAGATCATTGGT 300
Query 301 GGGATGATGATAGGACCGTCCATG-TTAGGAAGAAACCGAAACTTCAATTACTATCTGTT 359
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 301 GGGATGATGATAGGACCGTCCATGCTT-GGAAGAAGCCGAAACTTCAATTACTATCTGTT 359
Query 360 TCCACCGATTGCGAATTACATATGCGCAAACATAGGACTGATGGGATTCTTTTACTTCTT 419
||| || |||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 360 TCCTCCAATTGCGAATTACATATGCGCGAACATAGGACTGTTGGGATTCTTTTATTTCTT 419
Query 420 CTTCCTCACGGCTGCCAAAACAGACGTTGCAGAAATCTTTAAAGCACCAAGAAAGCATAA 479
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCCTCACGGCTGCCAAGACGGACGTTGCAGAAATCTTTAAAGCACCAAGAAAGCATAA 479
Query 480 GTACATTGCTG-CAGTTAGCGTTTTGGTGCCGATTGCTTGCGTGGGGAGCACGGGAGCTG 538
||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 480 GTACATTGCTGCCA-TTAGCGTTTTGGTGCCGATTGCTTGCGTGGGGGGCACGGGGGCTG 538
Query 539 CCCTAAAACACAAAATGGATATAAGATTGCAGAAACCTTCGTCCATTGGAGGGGTCACGT 598
|| | ||| | ||||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 539 CCTTGAAAGAAAAAATGGATGTAAGATTGCAGAAATCTTCTTCCATTGGAGGGGTCACGT 598
Query 599 TCGCCTTGGGTTTCACTTCTTTTCCGGTCATTTACACTGTTTTGAGAGACATGAACCTTC 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TCGCCTTGGGTTTCACTTCTTTTCCAGTCATTTACACTGTTTTGAGAGACATGAACCTTC 658
Query 659 TCAACTCTGAGATAGGAAAGTTCGCCATGTCAGTGACTCTCCTTGGAGACATGGTTGGGG 718
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 659 TCAACTCCGAGATAGGAAAGTTCGCCATGTCAGTGACTCTCCTCGGAGACATGGTAGGGA 718
Query 719 TCTACGTGCTTGTTTTGTTTGAAGCCATGGCGCAGGCTGACGGAGGAGGAGGAGCATACT 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TCTACGTGCTTGTTTTGTTTGAAGCCATGGCGCAGGCTGACGGTGGAGGAGGAGCATACT 778
Query 779 CTGTCATATGGTTTCTCATATCGGCGGCTATCATGGCCGCTTGTTTGCTTTTGGTTGTGA 838
||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||
Sbjct 779 CTGTCATATGGTTTCTCATCTCATCGGCTATCTTGGCCGCTTTTTTGCTTTTGGTTGTGA 838
Query 839 AACGATCCTTTGA-ATGGATTGTCGCCAAAACGCCTGAGGGAGGACTCGTGAACCAAAAC 897
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AACGAAGCTTTGAGA-GGATTGTCGCCAAAACGCCTGAGGGAGGACTCGTGAACCAAAAC 897
Query 898 TACATCGTCAAT-ATTCTCATGGGTGTCCTTGTCTCTTGTTTCCTCACTGACATGTTCGG 956
||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 898 TACATTGTC-ATGATTCTCATGGGTGTCCTTGTCTCTTGTTTCCTCACCGACATGTTTGG 956
Query 957 TATGGCTATAGCTGTTGGACCCATTTGGCTGGGGTTGGTGGTCCCTCATGGACCACCGTT 1016
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 957 TATGGCTATAGCCGTTGGACCCATTTGGCTAGGGTTGGTGGTCCCTCATGGCCCACCGTT 1016
Query 1017 AGGTTCGACGTTGGCTATTAGGAGCGAGACCTTTGTTAATGAATTCTTGATGCCTTTCTC 1076
||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 GGGTTCCACGTTGGCTATTCGGAGCGAGACCTTCGTTAATGAATTCTTGATGCCTTTCTC 1076
Query 1077 TTTTGCTTTGGTGGGACAAAAAACCAATGTCAACTTAATTAGCAAAGAGACGTGGCCCAA 1136
||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||
Sbjct 1077 TTTTGCTTTAGTGGGACAAAAAACCAATGTCAACTTACTTAGCAATGAGACTTGGCCTAA 1136
Query 1137 ACAGATCTCTCCTCTTATCTACATGAGCATCGTTGGCTTCGTCACCAAGTTTGTCTCTTC 1196
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 ACAGGTCTCTCCTCTTGTCTACATGAGCATCGTTGGCTTCGTCACCAAGTTTGTCTCCTC 1196
Query 1197 CACTGGCGCTGCTCTCTTCTTTAAAGTCCCCACTAGGGACAGTCTCACGCTTGGCCTGAT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1197 CACTGGCGCTGCTCTCTTCTTTAAAGTCCCCACTAGGGACAGTCTCACGCTTGGCTTGAT 1256
Query 1257 GATGAACTTGAGAGGCCAGATCGATATCTTACTCTACTTGCATTGGATCGACAAACAAAT 1316
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1257 GATGAACCTGAGAGGCCAGATCGATATCTTGCTCTACTTGCATTGGATCGACAAACGTAT 1316
Query 1317 GGTAGGCTTACCCGGTTATTCTGTCATGGTTTTGTATGCGA-TCGTGGTCACGGGTGTAA 1375
||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||
Sbjct 1317 GGTAGGCTTACCCGGTTATACTGTCATGGTTTTGTATGCCATTC-TGGTCACGGGTGTAA 1375
Query 1376 CAGCGCCGCTAATCAGCTTCCTCTACGATCCCACTCGGCCTTATAGAAGCAGCAAGCGCC 1435
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 CAGCGCCGCTCATCAGTTTCCTCTACGATCCCACTCGGCCTTACAGAAGCAGCAAGCGCC 1435
Query 1436 GCACAATCCAACACACTCCTCAGAACACCGAGACGGGACTAGTTCTTGCAGTAACCGACC 1495
|||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1436 GCACAATCCAGCACACTCCTCAGAACACCGAGATGGGACTAGTTCTTGCAGTCTCCGACC 1495
Query 1496 ATGATACCTTCTCAGGCTTGATCACGTTTCTAGACTTCGCTTATCCCACTAAAACTAGTC 1555
||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1496 ATGATACCTTCTCTGGCTTGATCACCTTTCTCGACTTCGCCTATCCCACTAAAACTAGTC 1555
Query 1556 CTTTCTCTGTATTCGCAATTCAGCTAGTGGAACTGGAAGGGCGTGCCCAACCCTTGTTTA 1615
|||| ||| |||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1556 CTTTTTCTATATTCGCAATCCAGCTTGTGGAACTGGAAGGGCGTGCCCAACCGTTGTTTA 1615
Query 1616 TTGCACACGACAA--G-AA-AA-G-GGAGGAAGAATAC---GAGGAAGAGGAAGAGCCTG 1666
||| ||||||||| | || || | ||| ||||||||| ||||||||||||||||| |
Sbjct 1616 TTGAACACGACAAGCGAAAGAAGGAGGATGAAGAATACGAGGAGGAAGAGGAAGAGCC-G 1674
Query 1667 CAGAGCGTAT--GG-GGAGCAGGCGAGTAGACCAAGTGCAGAGCGCATTTAAACTGTACC 1723
|||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1675 --GAGCGTATGCGGAGGAGCAGGCGAGTAGACCAGGTGCAGAGCGCCTTTAAACTGTACC 1732
Query 1724 AAGAGAAAAGAAGTGAGTGTGTGACGATGCATGCCTACACTG-CACATGCTTCAAAGCAT 1782
|||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||
Sbjct 1733 AAGAGAAAAGAAGTGAGTGTGTGAAGATGCATGCCTACACCGCCA-ATGCTTCAAAGCAT 1791
Query 1783 AACATGTATCAAAATATTTGCGAGCTGGCTTTGACCAAGAAAACCGCTTTCATTCTCTTA 1842
||||||||||| ||||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 1792 CACATGTATCAAGATATTTGTGGGGTGGCCTTGACCAAGAAAACCGCTTTCATTCTCTTA 1851
Query 1843 CCTTATCAGAAAGAGCGTCTTCAAGACGCAGCTCTTACCGAGCTACGTGACTCCGGCATG 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 CCTTATCAGAAAGAGCGTCTTCAAGACGCAGCTCTTACCGAGCTACGTGACTCCGGCATG 1911
Query 1903 CTATCTGTGAACGCAGACGTCTTGGCACACACACCATGTTCTGTCTGTATCTATTACGAG 1962
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1912 CTATCTGTGAACGCAGACGTCTTGGCACACACACCTTGCTCTGTCTGTATCTATTATGAG 1971
Query 1963 AAGGGACGACTTAAGAACGCTATGGTTAGGTCATCCATGGACCCACAACACACAACAAAT 2022
|||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct 1972 AAGGGACGACTTAAAAACGCCATGGTTCGGTCATCCATGGACCCGCAACACACAACAAAT 2031
Query 2023 TCTAGCCATATGAGGCAAGAAATGTACCGTTTCGTGGTTCTGTTTTTAGGAGGAGCTGAT 2082
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 TCAAGCCATATGAGGCAAGAAATGTACCGTTTCGTGGTTCTGTTTTTAGGAGGAGCTGAT 2091
Query 2083 AACAGAGAAGCTCTGCATCTGGCTGATAGGATGACGGAGAATCCGT-TCATAAACTTGAC 2141
||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||
Sbjct 2092 AACAGAGAAGCTCTGCATCTGGCTGATAGGATGACGGAGAACCCGTAT-ATAACCTTGAC 2150
Query 2142 AGTGATTAGGTTCTTGGCGCACAACCACGAAGGAGAGGACGAGAGGGAGAAGAAGCTGGA 2201
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2151 AGTTATTAGGTTCTTGGCGCACAACCACGAAGGAGAGGATGAGAGGGAGAAGAAGCTAGA 2210
Query 2202 CGATGGGGTGGTGACGTGGTTCTGGGTCAAGAACGAAAGCAACGCTAGGGTTAGCTACAA 2261
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2211 CGATGGGGTGGTGACGTGGTTCTGGGTCAAGAACGAAAGCAACGAAAGGGTTAGTTACAA 2270
Query 2262 GGAGGTTGTTGTGAAGAACGGTGCTGAGACGTTGGCTGCGATTCAAGCAATGAATGTCAA 2321
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2271 GGAGGTTGTTGTCAAGAACGGTGCTGAGACATTGGCTGCGATTCAAGCAATGAATGTTAA 2330
Query 2322 TGACTATGATTTGTGGATAACCGGGAGGAGAGAAGGGATCAATCCAAAGATTCTGGAAGG 2381
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2331 TGACTACGATCTGTGGATAACCGGGAGGAGAGAAGGGATCAACCCAAAGATTCAGGAAGG 2390
Query 2382 ACTTTCTACGTGGAGCGAAGACCACCAGCTTGGAGTCATTGGAGACACCGTGGCTGGGAG 2441
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 2391 ACTTTCTACGTGGAGCGAGGACCACCAGCTTGGAGTCATCGGAGACACAGTGGCTGGGAG 2450
Query 2442 CGTTTTCGCCTCGGAGGGTTCGGTGTTGGTGGTGCAGCAACAAGTGAGAAACCAGATGGG 2501
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2451 CGTTTTCGCCTCGGATGGTTCGGTGTTGGTGGTGCAGCAACAAGTGAGGAACCAGAAGGG 2510
Query 2502 TGGTGATGGTTTCTTGAACGGCAAGTTTGATTACAAGAAATTAGTGTCTCCTTGGTCTCA 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 TGGTGATGGTTTCTTGAACGGCAAGTTTGATTACAAGAAATTAGTGTCTCCTTGGTCTCA 2570
Query 2562 CTCTCATAATTGA 2574
|||||||||||||
Sbjct 2571 CTCTCATAATTGA 2583
> Ahg330263 jgi|Araly1|330263|fgenesh1_pm.C_scaffold_7002490
Length=2586
Score = 2388 bits (1293), Expect = 0.0
Identities = 2202/2631 (84%), Gaps = 102/2631 (4%)
Strand=Plus/Plus
Query 1 ATGGTTAGGTC-TTT-CCCA--AGTGATGGCTGGAGTGCCCTGCCTACCCGTTTTGGGTT 56
||||||||| | ||| |||| | ||| | | ||||| ||||||||||| |||||||||
Sbjct 1 ATGGTTAGG-CATTTCCCCATCAATGACGACCAGAGTGTCCTGCCTACCCATTTTGGGTT 59
Query 57 CTGGCCAGAG-AATCCAACCACCGCC-GGAGTGGTCAGC-AGTCGTGTTTTCTCAGCCAG 113
||||| | | ||| |||||||| || |||| ||||| | |||||||| ||||| |||
Sbjct 60 TTGGCC-GGGTAATTCAACCACC-CCGGGAGAGGTCA-CTAGTCGTGTCTTCTCTCCCAA 116
Query 114 ACTTCCGGAGGTTTGCCGACAGGTTCACGA-TAAGCAGCCGTTCGGAATGTTCAAAGGCG 172
|||||||| ||| ||||| || |||| | |||||| ||||| ||||||||||||||||
Sbjct 117 ACTTCCGGTGGTATGCCGGCAACTTCA-TAGTAAGCAACCGTTTGGAATGTTCAAAGGCG 175
Query 173 AAAATGGC-ATGAACTACACATTTTCAACCTTTTTGATCGAAGCAATAC-TCATCATTTT 230
||||| || |||||||| ||||||| || ||||| ||||||||||| | ||||||||||
Sbjct 176 AAAAT-GCGATGAACTATGCATTTTCGACTTTTTTAATCGAAGCAAT-CATCATCATTTT 233
Query 231 CTTCATCAAAATT-GTTTACG--TCCTCCTTCGACCTCTTCGCCAACCTCGTATAGTCTG 287
|| |||| ||||| | ||| | || |||||||||||||||||||||||||||||||| |
Sbjct 234 CTGCATC-AAATTCG-TTA-GTTTCGTCCTTCGACCTCTTCGCCAACCTCGTATAGTCAG 290
Query 288 CGAGATCATTGGTGGGATGATGATAGGACCGTCCATG-TTAGGAAGAAACCGAAACTTCA 346
||||||||||||||| |||||||||||||| || ||| || ||| ||| |||||| ||||
Sbjct 291 CGAGATCATTGGTGGAATGATGATAGGACCATCAATGCTT-GGAGGAAGCCGAAATTTCA 349
Query 347 ATTACTATCTGTTTCCACCGATTGCGAATTACATATGCGCAAACATAGGACTGATGGGAT 406
||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 350 ATTACTATCTGTTCCCACCGATCGCGAACTACATATGCGCAAACATAGGACTAATGGGAT 409
Query 407 TCTTTTACTTCTTCTTCCTCACGGCTGCCAAAACAGACGTTGCAGAAATCT-TTAAAGCA 465
|||| |||||| ||||||||||||| || || || || |||||| || | | ||||
Sbjct 410 TCTTCTACTTCCTCTTCCTCACGGCCGCGAAGACGGATGTTGCATCCAT-TGGGAGAGCA 468
Query 466 CCAAGAAAGCATAAGTACATTGCTG-CAGTTAGCGTTTTGGTGCCGATTGCT-TGCGTGG 523
||||||||||| ||||||||||||| || || | ||| | ||||| ||| | ||||| |
Sbjct 469 CCAAGAAAGCACAAGTACATTGCTGCCA-TTGGTGTTATCGTGCCAATT-ATCTGCGT-G 525
Query 524 GGAGCACG-GGAGCT-GCCCTAAAACACAAAATGGATATAAGA-TTGCAGAAACCTTCGT 580
||||| || || | | ||| | | | ||||||||| || | ||| |||| |||||||
Sbjct 526 GGAGC-CGTGGGGATGGCCATGCGAGATAAAATGGAT-GAAAACTTGAAGAAGCCTTCGT 583
Query 581 CCATTGGAGGGG-TCACGTTCGCCTTGGGTTTCACTTCTTTTCCGGTCATTTACACTGTT 639
||||||| |||| ||| ||||||||||| |||||| ||||| || |||||||| |||||
Sbjct 584 CCATTGG-GGGGATCATGTTCGCCTTGGCTTTCACCTCTTTCCCTGTCATTTATTCTGTT 642
Query 640 TTGAGAGACATGAACCTTCTCAACTCTGAGATAGGAAAGTTCGCCATGTCAGTGACTCTC 699
|||||||||||||||||||| ||||| ||| | || |||||||||||||| ||| |||||
Sbjct 643 TTGAGAGACATGAACCTTCTTAACTCCGAGGTGGGCAAGTTCGCCATGTCGGTGGCTCTC 702
Query 700 CTTGGAGACATGGTTGGGGTCTACGTGCTTGTT-TTGTTTGAAGCCATGGCGCAGGCTGA 758
||||||||||||| |||||||||||| ||||| || |||||||||||| ||||||||||
Sbjct 703 CTTGGAGACATGGCAGGGGTCTACGTGATTGTTATT-TTTGAAGCCATGACGCAGGCTGA 761
Query 759 CGGAGGAGGAGGAGCATACTCTGTCATATGGTTTCTCA-TATCGGCGGCTA-TCATGGCC 816
||||||||||| | || |||| | | |||||||| | |||||| || || || | ||
Sbjct 762 CGGAGGAGGAGCAT-ATGCTCTCTT-T-TGGTTTCT-AGTATCGGTGG-TAATCTTCGCG 816
Query 817 GCTTGTT-TGCTTTTGGTTGTGAAACGATCCTTTGAATGGATTGTCGCCAAAACGCCTGA 875
|||| || ||||||||||||| | |||| ||||||| |||||||| ||| ||||||||||
Sbjct 817 GCTT-TTATGCTTTTGGTTGTTAGACGAGCCTTTGATTGGATTGTTGCCCAAACGCCTGA 875
Query 876 GGGAGGACTCGTGAACCAAAACTACATCGTCAAT-ATTCTCATGGGTGTCCTTGTCTCTT 934
||| ||| ||||||||||||||||| |||| | ||||||||||||||||||| |||||
Sbjct 876 AGGAACACTTGTGAACCAAAACTACATTGTCA-TGATTCTCATGGGTGTCCTTGCCTCTT 934
Query 935 GTTTCCTCACTGACATGTTCGGTATGGCTATAGCTGTTGGACCCATTTGGCTGGGGTTGG 994
|||||||||| |||||||||||| | ||||||| || |||||||||||| | ||||||
Sbjct 935 GTTTCCTCACCGACATGTTCGGTCTTTCTATAGCCGTAGGACCCATTTGGTTAGGGTTGC 994
Query 995 TGGTCCCTCATGGACCACCGTTAGGTTCGACGTTGGCTATTAGGAGCGAGACCTTTGT-T 1053
||||||||||||| |||||||| ||||||||||||||| || ||||||||||||| | |
Sbjct 995 TGGTCCCTCATGGCCCACCGTTGGGTTCGACGTTGGCTGTTCGGAGCGAGACCTTCATCT 1054
Query 1054 AATGAATTCTTGATGCCTTTCTCTTTTGCTTTGGTGGGACAAAAAACCAATGT-CAACTT 1112
| |||||| |||||||||||||||| |||||||||||||||| |||||| | || ||
Sbjct 1055 A-TGAATTTTTGATGCCTTTCTCTTATGCTTTGGTGGGACAAGGCACCAATATTCA-CT- 1111
Query 1113 AATT-AGCAAA-GAGACGTGGCCCAAACAGATCTCTCCTCT-TATCTACATGAGCATCGT 1169
| || || | | ||||| |||| | ||| |||||||||| | ||||||||| | ||||
Sbjct 1112 ACTTTAG-AGATGAGACATGGCGTGATCAGCTCTCTCCTCTCT-TCTACATGACCCTCGT 1169
Query 1170 TGGCTTCGTCACCAAGTTTGTCTCTTCCACTGGCGCTGCTCTCTTCTTTAAAGTCCCCAC 1229
|||||| |||| |||||| ||||| || ||| | ||||||||||||| ||||||||| |
Sbjct 1170 CGGCTTCTTCACTAAGTTTCTCTCTACCGCTGCCACTGCTCTCTTCTTCAAAGTCCCCGC 1229
Query 1230 TAGGGACAGTCTCACGCTTGGCCTGATGATGAACTTGAGAGGCCAGATCGATATCTTACT 1289
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 1230 TAGGGACAGTCTCACGCTTGGGTTGATGATGAACTTGAGAGGCCAGATGGATATCTTGGT 1289
Query 1290 CTACTTGCATTGGATCGACAAACAAATGGTAGGCTTACCCGGTTATT-CTGTCATGGTTT 1348
|||||||||||||||||| |||| || || ||||| || |||| | ||||||||||||
Sbjct 1290 CTACTTGCATTGGATCGATAAACGTATTGTGGGCTTTCCAGGTT-TCACTGTCATGGTTT 1348
Query 1349 TGTATGCGATCGTGGTCACGGGTGTAAC-AGCGCCGCTAATCAGCTTCCTCTACGATCCC 1407
|| || || | || ||||||| ||| | | ||||||| |||||||| ||||||||||||
Sbjct 1349 TGCATTCGGTTGTAGTCACGGCCGTATCGA-CGCCGCTCATCAGCTTTCTCTACGATCCC 1407
Query 1408 ACTCGGCCTTATAGAAGCAGCAAGCGCCGCACAATCCAACACACTCCTCAGAACACCGAG 1467
|||||||| || |||||||||| | |||||| ||||||||||||||||| |||||||||
Sbjct 1408 ACTCGGCCATACCGAAGCAGCAAACACCGCACCATCCAACACACTCCTCAAAACACCGAG 1467
Query 1468 ACGGGACTAGTTCTTGCAGTAACCGACCATGATACCTTCTCAGGCTTGATCACGTTTC-T 1526
| |||||| ||||||||||| || |||| || ||||| || |||||||| || |||| |
Sbjct 1468 ATGGGACTGGTTCTTGCAGTCTCCAACCACGAAACCTTATCCGGCTTGATAAC-TTTCCT 1526
Query 1527 AGACTTCGCTTATCCCACTAAAACTAGTCCTTTCTCTGTATTCGCAATTCAGCTAGTGGA 1586
|||||||| ||||||||||||| |||||| || ||| |||||||| | ||||| |||||
Sbjct 1527 CGACTTCGCCTATCCCACTAAAAGTAGTCCCTTGTCTATATTCGCAGTCCAGCTTGTGGA 1586
Query 1587 ACTGGAAGGGCGTGCCCAAC-CC-TTGTTTATTGCAC-ACGA-CAA-GAAA--AGG-G-A 1637
||| | |||| | ||| | | || |||||||||| || | || || ||| ||| | |
Sbjct 1587 ACTAGCAGGGAGAGCC-A-CGCCGTTGTTTATTG-ACCATGAGCAGCGAAGGGAGGAGGA 1643
Query 1638 -G--GAAGAATACGAGGAAGAGGAAGA-G-CCTGCAGAGCGTATGGGG-A--GCAGGCGA 1689
| |||||||||||||| || ||||| | || | || |||| | | | |||||
Sbjct 1644 TGAAGAAGAATACGAGGAGGAAGAAGAAGACC--CTGACCGTACAACGCAAAGTGGGCGA 1701
Query 1690 GTAGACCAAGTGCAGAGCGCATTTAAACTGTACCAAGAGAAAAGA-AGTGAGTGTGTGA- 1747
|||||||||| |||||||| ||||| ||||||||||||||||| | ||||||||| |
Sbjct 1702 ATAGACCAAGTCCAGAGCGCCTTTAAGTTGTACCAAGAGAAAAGAGA-TGAGTGTGT-AT 1759
Query 1748 CGATGCATGCCTACACTGCACATGCTTCAAAGCATAACATGTATCAAAATATTTGCGAGC 1807
|| | | ||||||||| || |||||| |||| | | |||||| ||| | ||||||||||
Sbjct 1760 CGCTTCGTGCCTACACCGCTCATGCTCCAAAACGTCTCATGTACCAAGACATTTGCGAGC 1819
Query 1808 TGGCTTTGACCAAGAAAA-CCGCTTTCATTCTCTTACCTTATCAGAAAGAGCGTCTTCAA 1866
|||| ||| | || |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1820 TGGCCTTGGCTAA-AAAAGCCGCTTTCATTCTCTTACCTTATCAGAAAGAGCGTCTTGAA 1878
Query 1867 GACGCAGCTCTTACCGAGCTACGTGACTCCGGCATGCTATCTGTGAACGCAGACGTCTTG 1926
||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1879 GACGCTGCCCCTACCGAGCTACGTGACTCCGGCATGCTATCTGTGAACGCAGACGTATTG 1938
Query 1927 GCACACACACCATGTTCTGTCTGTATCTA-TTACGAGAAGGGACGACTTAAGAACGCTAT 1985
| ||||||||| || ||||| |||||||| || || || ||||| ||||||||||| |
Sbjct 1939 GAACACACACCTTGCTCTGTATGTATCTACTTT-GACAAAGGACGGCTTAAGAACGCGGT 1997
Query 1986 GGTTAGGTCATCCATGGACCCACAACACACAACAAATTCTAGCCATATGAGGCAAGAAAT 2045
|||| ||| ||||||||||| ||||||| ||||||| || |||| ||||| |||||||
Sbjct 1998 GGTTCGGTTATCCATGGACCTACAACACTCAACAAACTCAAGCCGTATGAAACAAGAAAC 2057
Query 2046 GTACCGTTTCGTGGTTCTGTTTTTAGGAGGAGCTGATAACAGAGAAGCTCTGCATCTGGC 2105
||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| | ||
Sbjct 2058 ATACCGTTTCGTGGTTTTGTTTCTAGGAGGAGCTGATAACAGAGAAGCTCTACATTTAGC 2117
Query 2106 TGATAGGATGACGGAGAATCC-GTTCATAAACTTGACAGTGATTAGGTTCTTGGCGCACA 2164
||||| ||| || | || || | | ||| |||||| ||||| | ||||||||| ||
Sbjct 2118 CGATAGAATGTCG-ACAAACCCGGACGTAACCTTGACGGTGATCCGATTCTTGGCGTTCA 2176
Query 2165 ACCACGAAGGAGAGGACGAGAGGGAGAAGAAGCTGGACGATGGGGTGGTGACGTGGTTCT 2224
|||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| |
Sbjct 2177 ACCACGAAGGAGAGGATGAGAGAGAGAAGAAGCTAGACGATGGGGTAGTCACGTGGTTTT 2236
Query 2225 GGGTCAAGAACGAAAGCAACGCTAGGGTTAGCTACAAGGAGGTTGTTGTGAAGAACGGTG 2284
|||||||||||||| | |||| ||||||||| ||||| |||||||| || || |||||||
Sbjct 2237 GGGTCAAGAACGAAGGAAACGATAGGGTTAGTTACAAAGAGGTTGTAGTTAAAAACGGTG 2296
Query 2285 CTGAGACGTTGGCTGCGATTCAAGCAATGAATGTCAATGACTATGATTTGTGGATAACCG 2344
||||||| ||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||
Sbjct 2297 CTGAGACATTGGCTGCGATCCAAGCAATGAATGTCAACGACTACGATCTATGGATAACCG 2356
Query 2345 GGAGGAGAGAAGGGATCAATCCAAAGATTCTGGAAGGACTT-TCTACGTGGAGCGAAGAC 2403
| || |||||||||||||| ||||||||||| ||||| || || |||||||||||||||
Sbjct 2357 GAAGAAGAGAAGGGATCAACCCAAAGATTCTTGAAGGT-TTATCCACGTGGAGCGAAGAC 2415
Query 2404 CACCAGCTTGGAGTCATTGGAGACACCGTGGCTGGGAGCGTTTTCGCCTCGGAGGGTTCG 2463
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 2416 CACCAGCTTGGAGTCATCGGAGACACCGTGGCTGGAAGCGTTTTCGCCTCCGAGGGATCG 2475
Query 2464 GTGTTGGTGGTGCAGCAACAAGTGAGAAACCAGATGGGTGGTGATGGTTTCTTGAACGGC 2523
||||||||||||||||||||||| || ||||| | |||||||||||||||||||| |||
Sbjct 2476 GTGTTGGTGGTGCAGCAACAAGTAAGGAACCAAAAAGGTGGTGATGGTTTCTTGAATGGC 2535
Query 2524 AAGTTTGATTACAAGAAATTAGTGTCTCCTTGGTCTCACTCTCATAATTGA 2574
|||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 2536 AAGTTTGATTACAAGAGTTTCTTATCTCCTTGGTCTCACTCTCATAATTGA 2586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5