BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58470.1
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495966 jgi|Araly1|495966|fgenesh2_kg.8__1782__AT5G58470.2 2126 0.0
> Ahg495966 jgi|Araly1|495966|fgenesh2_kg.8__1782__AT5G58470.2
Length=2075
Score = 2126 bits (1151), Expect = 0.0
Identities = 1373/1474 (93%), Gaps = 40/1474 (3%)
Strand=Plus/Plus
Query 5 AAAAAGGCTCTCACACGATTCGTTAAG-AGTTTT-GGTCTGTTGTTTATCGCAAACCCTA 62
||||||| |||||||| |||||||||| |||||| |||||| | ||||||||||||||||
Sbjct 1 AAAAAGGGTCTCACACAATTCGTTAAGAAGTTTTGGGTCTG-T-TTTATCGCAAACCCTA 58
Query 63 GGTCATGGCTGGGATGTACAATCAAGACGGCGGCGGAGGTGCGCCTATTCCGTCGTACGG 122
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 59 GGTCATGGCTGGGATGTACAATCAAGATGGCGGCGGAGGTGCGCCTATCCCGTCGTACGG 118
Query 123 TGGTGATGGATACGGCGGAGGGGGAGGTTATGGAGGTGGTGATGCTGGATATGGTGGACG 182
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 119 TGGTGATGGATACGGCGGAGGTGGAGGTTATGGAGGTGGTGATACTGGATATGGAGGACG 178
Query 183 CGGTGCCTCTGGCGGAGGTA-GTTACGGCGGACGCGGTGGTTA---CGGTGGAGG-CG-- 235
||||||||||||||||| | |||||||||||||||||||||| |||||| || |
Sbjct 179 TGGTGCCTCTGGCGGAGG-AGGTTACGGCGGACGCGGTGGTTATGGCGGTGGCGGTGGTA 237
Query 236 GTGGTAGAGGAAATCGAGGCGGTGGAGGTGGTGGATATCAAGGAGGTGATCGCGGTGGAA 295
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GTGGTAGAGGAAATCGAGGTGGTGGCGGTGGTGGATATCAAGGAGGTGATCGCGGTGGAA 297
Query 296 GAGGAAGTGGCGGCGGAGGCAGAGATGGAGATTGGCGTTGTCCCAACCCCAGTTGTGGGA 355
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 GAGGAAGTGGTGGCGGCGGCAGAGATGGAGATTGGCGTTGTCCCAACCCTAGTTGTGGGA 357
Query 356 ACGTGAACTTTGCAAGGAGAGTTGAATGTAACAAGTGTGGTGCACTTGCTCCTTCTGGTA 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 ACGTGAACTTTGCAAGGAGAGTTGAATGTAACAAGTGTGGTGCACCTGCTCCTTCTGGTA 417
Query 416 ------CTAGTTCTGGTGCTAATGATCGTGGAGGTGGTGGATATAGCCGAGGTGGAGGTG 469
|| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 418 CTGGTTCTGGTTCTGGTGCTGGTGATCGTGGCGGTGGTGGATATAGCCGAGGTGGAGGTG 477
Query 470 ACAGTGATCGTGGGGGTGGTCGTGGTGGTAGAAACGATAGTGGTAGGAGCTATGAGAGTA 529
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 478 CCAGTGATCGTGGGGGTGGTCGTGGAGGTAGAAACGATAGTGGTAGGAGCTATGAGAGTA 537
Query 530 GTAGATATGATGGTGGAAGTAGGAGTGGTGGTAGCTATGGTAGTGGTAGTCA---GAGGG 586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 GTAGATATGATGGTGGAAGTAGGAGTGGTGGTAGCTATGGTAGTGGTAGTCAACAGAGGG 597
Query 587 AAAATGGTTCGTATGGTCAGGCTCCTCCTCCTGCTGCAGCTATTCCATCCTACGATGGTT 646
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 AAAATGGTTCGTATGGTCAGGCTCCTCCTCCTGC---AGCTATTCCATCCTACGATGGTT 654
Query 647 CTGGAAGTTATCCTCCACCCACGGGTTATGGAATGGAAGCTGTTCCCCCGCCTACAAGCT 706
|||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||
Sbjct 655 CTGGAAGTTATCCTCCACCCTCTGGTTATGGAATGGAAGCTGTGCCCCCGCCTCCAAGCT 714
Query 707 ATTCTGGTGGCCCGCCGTCATATGGTGGTCCACGAGGGGGTTATGGCAGTGATGCACCGA 766
||||||||||||| ||||||||||||| |||| |||| ||||||||| |||||||||| |
Sbjct 715 ATTCTGGTGGCCCCCCGTCATATGGTGCTCCAAGAGGAGGTTATGGCGGTGATGCACCAA 774
Query 767 GCACTGGTGGTCGTGGTGGTAGGAGTGGCGGCTATGATGGTGGTAGTGCTCCTCGACGGC 826
||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 775 GCACTGGTGGTCGGGGTAGTAGGGGTGGCGGCTATGATGGGGGTAGTGCTCCTCGACGGC 834
Query 827 AGGAAGCTAGTTATGAAGATGCAG-CTACTGAAAAAGTCAAGCAGTGCGATGCTGATTGT 885
|||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||
Sbjct 835 AGGAAGCTAGTTATGAAGATGCAGGC-ACTGAA---GTCAAGCAGTGCGATGCGGATTGT 890
Query 886 GATGATAATTGTGATAATGCTAGAATATACATCTCTAATTTACCTCCGGATGTGACAACT 945
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 891 GATGATACTTGTGATAATGCTAGAATATACATCTCTAATTTACCTCTGGATGTGACTACT 950
Query 946 GATGAACTCAAGGATCTCTTTGGTGGCATTGGCCAAGTTGGAAGAATTAAGCAGAAGCGT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 GATGAACTCAAGGATCTCTTTGGTGGCATTGGCCAAGTTGGAAGAATTAAGCAAAAGCGG 1010
Query 1006 GGTTACAAAGATCAGTGGCCCTATAATATTAAGATTTACACTGATGAGAAGGGTAACTAT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 GGTTACAAAGATCAGTGGCCCTATAATATTAAGATTTACACTGATGAGAAGGGTAACAAT 1070
Query 1066 AAAGGTGACGCCTGTCTGGCTTATGAAGATCCCAGCGCTGCACACTCTGCAGGCGGCTTT 1125
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1071 AAAGGTGACGCCTGTCTGGCCTATGAAGATCCTAGCGCTGCACACTCTGCAGGCGGCTTT 1130
Query 1126 TTCAACAATTACGAAATGAGGGGGAACAAGATTAGTGTAACGATGGCAGAAAAGTCTGCG 1185
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1131 TTCAACAATTACGAAATGAGGGGGAACAAAATTAGTGTAACGATGGCAGCGAAGTCTGCG 1190
Query 1186 CCCCGTGCTCCTACCTTTGACCagagagg---tgg--g-ggt--ag-aggaggaggaggt 1236
|||||||||||||||||||| |||||||| ||| | || || ||||||||||||
Sbjct 1191 CCCCGTGCTCCTACCTTTGAGCAGAGAGGCGGTGGTAGAGGAGGAGGAGGAGGAGGAGGG 1250
Query 1237 ggtggctatggtggtggtgggggagaCAGAAGAAGAGACAACTACAGTTCAGGGCCAGAC 1296
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1251 GGTGGCTATGGTGGTGGTGGGGGAGACAGAAGAAGAGATAACTACGGTTCAGGGCCAGAC 1310
Query 1297 AGAAACCACCATGGGGGAAACCGGTCTCGTCCATATTGAGAGAAAGAGAGGAATGAATGA 1356
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1311 AGAAACCATCATGGGGGAAACCGGTCTCGTCCATATTGAGAGAAAGAGAGGAATCAGTGA 1370
Query 1357 ATCAGCTGTTATGTGTTCTAAGAGTTTTGTGTGTGTTAAGGAGGGAATTTTAGTAAAATG 1416
||||||| |||||||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct 1371 ATCAGCTATTATGTGTTCTAAGAGTTTTGTGTGT-TGAGGG-GGGAATTTTAGTAAAATG 1428
Query 1417 TTCTATGAATCCTCATATTGGAGATACaaaaaaa 1450
|||||||| || ||||||||||||||||||||||
Sbjct 1429 TTCTATGAGTCATCATATTGGAGATACAAAAAAA 1462
Score = 444 bits (240), Expect = 1e-123
Identities = 339/383 (89%), Gaps = 22/383 (6%)
Strand=Plus/Plus
Query 1452 AGGAAGCTGATATTTAACTGCAAAATGCATTGCAAATTGGTGCTATGATGATTTCAGGTG 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 AGGAAGCTGATATTTAACTGCAAAATGCATTGCAAATTGGTGCTATGATGATTTCAGGTG 1685
Query 1512 AGTGCATTCATCTTGATTACTTCTTTCAAC--A-CCAGAAGTCCCTTTTTTGCTTCTCTT 1568
|||||||| |||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 1686 AGTGCATTTATCTTGATTACTTCTTTCTACTGAACCAGAAGTCCCTTTATTGCTTCTCTT 1745
Query 1569 CCTTCtt-ttttt-GACTCTGTTCAACACAAACAAAAC-AGTCGTATGTTTTCATGTTGT 1625
| ||||| ||||| |||||||||||| ||||||||| | |||| ||||||| ||||||||
Sbjct 1746 C-TTCTTATTTTTTGACTCTGTTCAAGACAAACAAATCCAGTCATATGTTTCCATGTTGT 1804
Query 1626 ATTGTGTAATGCATTCATTTAGGCAACCACACTTCTCTTTACAATTTTCGGAGTT-GTTA 1684
|||||||| ||||||||||||||||| | |||||| ||| |||||| |||||||| || |
Sbjct 1805 ATTGTGTA-TGCATTCATTTAGGCAAACTCACTTCCCTTCACAATTATCGGAGTTAGT-A 1862
Query 1685 TCGTTTTTT---------CTCGCAAACTTC-TTTTATAGCAACATGTGTTCCTCGAGAAT 1734
|| |||||| ||| |||||||| |||||||||||||| |||||| | ||||
Sbjct 1863 TCTTTTTTTTTTTTTTTTCTCTCAAACTTCCTTTTATAGCAACATATGTTCCACAAGAAA 1922
Query 1735 TGGCAGGAGTGGGGGATGGCTAGGCACTTGTGTCTGATCAGTTGATCTGAAGTATGCAGT 1794
|||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1923 TGGCTGGAGTGGCGGATGGCTAGGCACTCGT--CTGATCAGTTGATCTGAAGTATGCAGT 1980
Query 1795 GACCTTTCAAAGATCAACTTGAT 1817
||| |||||||||||||||||||
Sbjct 1981 GACATTTCAAAGATCAACTTGAT 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76789933920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5