BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58480.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950559 jgi|Araly1|950559|scaffold_802446.1 2207 0.0
> Ahg950559 jgi|Araly1|950559|scaffold_802446.1
Length=1483
Score = 2207 bits (1195), Expect = 0.0
Identities = 1390/1484 (94%), Gaps = 14/1484 (1%)
Strand=Plus/Plus
Query 12 AGATTCACTGGATTTGATGGCTCGTCGGCTGTTTCTCCTCCTCCTCGCCGTCACGGCAGG 71
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 5 AGATTCACTGGATTTGATGGCTCGTCGGCTGTTTCTCCTCCTCCTCGCCGTGACGG-TGG 63
Query 72 -GTTGAGCTTGACGGGAACAACCGTCAG-AGCAGTT-GGCATAAATTGGGGGACAGAAGC 128
|||||||||||||||||||| |||| | |||| || ||| |||| |||||||| |||||
Sbjct 64 AGTTGAGCTTGACGGGAACAATCGTC-GTAGCA-TTCGGCGTAAACTGGGGGACGGAAGC 121
Query 129 GTCGCACCCTCTTCCGCCTTCAAAGGTTGTAGAGCTTCTGAAATCAAACGGCATTGTCAA 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 122 GTCGCACCCTCTTCCGCCTTCAAAGGTTGTAGAGCTTCTGAAATCAAACGGCATTGCCAA 181
Query 189 AGTGAAGCTCTTCGATGCCGACCCAAAAGTTCTCCGAGCTCTCTCTGGTTCTAATATTGG 248
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 182 AGTGAAGCTCTTCGATGCCGACCCAAAAGTTCTCCGAGCTCTCTCTGGCTCTAATATCGG 241
Query 249 TGTCACTATCGGAATCCAAAATTCGATGCTCAAGAGCTTGAATGCATCCGTAAAGGTAGC 308
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GGTCACTGTCGGAATCAAAAATTCGATGCTCAAGAGCTTGAATGCATCCGTAAAGGTAGC 301
Query 309 AGAGAGCTGGGTACATGACAATGTCACTCGTTACTTCAACGGTGGAAACAGAGTTCGAAT 368
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 302 AGAGAGCTGGGTCCATGACAATGTCACTCGTTACTTCAACGGCGGAAACAGAGTTCGAAT 361
Query 369 CGAGTATGTAGCAGTTGGAGAAGAGCCATTTCTCCAGAGCTATGGCAATCAGTATAAGCC 428
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 362 CGAGTACGTAGCAGTTGGAGATGAGCCATTTCTCCAGAGCTATGGCAATCAGTATAGGCC 421
Query 429 TTTTGTGATTGGGGCAGCTATGAATATCCAAAATGCTTTAGTTAAGGCGAACTTGGCAAA 488
|||||| ||||| ||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 422 TTTTGTCATTGGAGCAGCTATGAACATCCAAAATGCTTTAGCAAAGGCGAGCTTGGCAAA 481
Query 489 TGAAGTGAAGGTTGTAGTCCCCTCAAGCTTTGATTCCTTTCTTTCTGAATCTGGTCGACC 548
||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 482 TGACGTCAAGGTTGTAGTCCCCTCAAGCTTTGACTCCTTTCTTTCTGAATCCGGTCGACC 541
Query 549 TTCTTCAGGACACTTTAGGGCTGACCTCAACAAGACGATGATTGAACTCCTCTCCTTTCT 608
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 542 TTCTTCAGGACACTTTAGGGCTGACCTCAACAAGACGATGATCGAACTCCTCTCCTTTCT 601
Query 609 CACAAAGCACCACTCTCCtttttttGTGACAATCTCTCCTTTCCTAAGCTTTCACCAGAA 668
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 602 CACAAAGCATCACTCTCCTTTTTTTGTCACAATATCTCCTTTCCTAAGCTTTCACCAGAA 661
Query 669 CAAGAACATCTCCCTTGACTTTAGCCTCTTTAAAGAAACAGCAAAGGCTCACAAAGACGG 728
|||||||||||| || |||||||||||||| ||| |||||||| ||||||||||||| ||
Sbjct 662 CAAGAACATCTCTCTCGACTTTAGCCTCTTCAAACAAACAGCACAGGCTCACAAAGATGG 721
Query 729 ACGTAAAACCTACAGAAACAGCTTTGATCTAAGCTATGACACACTTGTCTCTGCATTGTT 788
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 722 GCGTAAAACCTACAGAAACAGCTTTGATCTGAGCTACGACATACTTGTCTCTGCATTGTC 781
Query 789 CACAATTGGGTTTTCGGAGGTGGATATCGTTGTGTCAAAGATCGGTTGGCCTACAGATGG 848
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 782 CACAATTGGGTTCTCAGAGGTGGATATCGTCGTGTCAAAGATCGGTTGGCCTACAGATGG 841
Query 849 AGCAGAAAATGCAACATCACTGACTGCTGAGGCGTTCTTTAAAGGACTGATAGTTCACTT 908
||||| |||||| ||||||| |||||||||||||||||| ||||||||||| | ||||||
Sbjct 842 AGCAGCAAATGCCACATCACCGACTGCTGAGGCGTTCTTCAAAGGACTGATGGGTCACTT 901
Query 909 GGAGAAAAAGACGGCCTCTCTCCCGCGTCCTCCTGTTGAAACCTACATTGAAAGTCTCTT 968
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 902 GGAGAAAAAGACGGGTTCTCTCCCGCGCCCTCCCGTTGAAACCTACATTGAAAGCCTGTT 961
Query 969 GGACGAAGATCAGAGAAACTTATCTGCTGGGAACTTTGAGAGGCACTGGGGAGTGTTCAC 1028
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 962 GGACGAAGATCAGAGAAACTTATCTTCTGGGAACTTTGAGAGGCACTGGGGAGTGTTCAC 1021
Query 1029 TTTCGACGGTCAAGCCAAATACAATTTCAGTTTCAACCATAA---GAA-TCA--GGTAAA 1082
||||| |||||||||||||||| ||||| ||||| |||||| ||| | || |||
Sbjct 1022 ATTCGATGGTCAAGCCAAATACAGTTTCAATTTCAGCCATAACCCGAAGAAAGTGGGAAA 1081
Query 1083 CGCGCAGAATGTTCAGTACCTTCCTCCTAAGTGGTGTGTGGTGAACAATAACAAGGACTT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CGCGCAGAATGTTCAGTACCTTCCTCCTAAGTGGTGTGTGGTGAACAATAACAAGGACTT 1141
Query 1143 GTCAAACGCGTCAGCAAGAGCATTAGAAGCGTGTGCTGTTGCGGACTGTACATCGATACT 1202
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1142 GTCAAACGCGTCAGCAAGAGCATTAGAAGCTTGTGCTGTCGCGGACTGCACATCGATACT 1201
Query 1203 TCCTGGCGGGTCGTGTTCAGGCATCAGATGGCCAGGCAACGTTTCATACGCGTTCAATAG 1262
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1202 TCCTGGCGGGTCGTGTTCCGGCATCAGATGGCCAGGCAACGTGTCATACGCGTTCAATAG 1261
Query 1263 CTTGTACCAGCAAAATGATCACAGTGCAGAAAGCTGCAACTTTGGTGGACTTGGTTTGAT 1322
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CTTGTATCAGCAAAATGATCACAGTGCAGAAAGCTGCAACTTTGGTGGACTTGGTTTGAT 1321
Query 1323 CACTACTGTTGATCCTTCTGAGGATAATTGCCGGTTCTCGATTCAACTTGACACTTCTCA 1382
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1322 CACTACCGTTGATCCTTCTGAGGATAATTGCAGGTTCTCGATTCAACTTGACACTTCTCA 1381
Query 1383 TTCATCTTCGCAAACTCCAAATTTCTTTCAGAGCTGGCCTCTCCTCTTATTGTTCCTACT 1442
|||| ||||||||| ||| | ||||| ||||||||||||||||||| ||||||||||||
Sbjct 1382 TTCAGCTTCGCAAATTCCTAGTTTCTGTCAGAGCTGGCCTCTCCTC--ATTGTTCCTACT 1439
Query 1443 GTCCGGACTCTTTTAAAGTTGTAGTTATAGCAAAATTTTGGTGG 1486
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTCTGGACTCTTTTAAAGTTGTAGTTATAGCAAAATTTTGGTGG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5