BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58490.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495968 jgi|Araly1|495968|fgenesh2_kg.8__1784__AT5G58490.1 1456 0.0
> Ahg495968 jgi|Araly1|495968|fgenesh2_kg.8__1784__AT5G58490.1
Length=998
Score = 1456 bits (788), Expect = 0.0
Identities = 903/960 (94%), Gaps = 2/960 (0%)
Strand=Plus/Plus
Query 67 GAGAAGTAGTCTGTGTCACCGGCGCCAGTGGCTGCATCGGCTCGTGGCTGGTCCATCAGC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 14 GAGAAGTAGTCTGTGTCACCGGCGCCAGTGGCTGCATCGGCTCGTGGCTGGTCCATCTGC 73
Query 127 TCCTCCTCCGCGGCTACTCCGTCCACGCCACCGTGAAAAACCTCCAGGATGAGAAAGAGA 186
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 74 TCCTCCACCGCGGCTACTCCGTCCACGCCACCGTGAAAAACCTCCAGGATGAGAAAGAAA 133
Query 187 CGAAACATCTAGAAGGTCTCGAAGGTGCAGCCACACGCCTCCATCTATTCGAGATGGATC 246
||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 134 CGAAACATCTAGAAGCTCTTGAAGGTGCCGCCACACGCCTCCATCTTTTCGAGATGGATC 193
Query 247 TCCTACAATACGACACCGTTTCCGCCGCCATCAATGGTTGCTCCGGCGTATTCCACCTCG 306
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 194 TCCTACAATACGACACCGTTTCCGCCGCCGTCAATGGATGCTCCGGCGTATTCCACCTCG 253
Query 307 CATCACCTTGTATCGTCGATGAAGTCCAAGATCCCCAGAAGCAACTACTTGACCCGGCGG 366
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 254 CATCGCCCTGTATCGTCGATGAAGTCCAAGATCCCCAGAAGCAACTACTTGACCCTGCGG 313
Query 367 TTAAAGGAACCATAAATGTTCTGACGGCGGCAAAAGAAGCCAGTGTTAAGAGAGTTGTTG 426
||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 314 TTAAAGGGACCATAAATGTACTGACTGCGGCGAAAGAAGCCGGTGTTAAGAGGGTTGTTG 373
Query 427 TGACGTCTTCGATATCGGCGATTACTCCAAGTCCCAACTGGCCTGCTGATAAGATCAAGA 486
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 374 TGACGTCTTCGATATCTGCCATAACTCCAAGTCCCAACTGGCCTGCCGATAAGATCAAGA 433
Query 487 ATGAGGAATGTTGGGCTGCTGAAGACTACTGCAGGCAAAATGGATTGTGGTATCCACTGT 546
|||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 434 ATGAGGAATGTTGGGCTGATCAAGACTACTGCAAGCAAAATGGATTATGGTATCCACTGT 493
Query 547 CGAAGACGCTTGCTGAGAAGGCAGCTTGGGAATTTGCAGAGGAGAAAGGATTGGATGTGG 606
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 494 CGAAGACTCTTGCTGAGAAGGCAGCTTGGGAATTTGCAGAGCAGAAGGGATTGGATGTGG 553
Query 607 TTGTGGTGAATCCAGGCACTGTCATGGGGCCTGTGATTCCTCCGTCTCTTAACGCTAGCA 666
||||||||||||||||||| |||||||||||||||||||| || ||| | ||||||||||
Sbjct 554 TTGTGGTGAATCCAGGCACCGTCATGGGGCCTGTGATTCCGCCATCTATAAACGCTAGCA 613
Query 667 TGCACATGCTTCTACGCCTTCTTCAGGGGTGCACGGAGACATACGAGAACTTCTTTATGG 726
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 614 TGCTCATGCTTCTACGCCTTCTTCAGGGGTGCACGGAGACATACGAGAACTTCTTCATGG 673
Query 727 GGTCTGTGCATTTCAAGGATGTGGCTTTAGCTCATATTCTTGTATACGAGGATCCATATT 786
||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |
Sbjct 674 GGTCTGTGCATTTCAAGGATGTGGCCTTAGCTCATATTCTTGTCTACGAGAATCCATCTG 733
Query 787 CGAAAGGAAGGCACT-TGTGCGTTGAGGCTATCTCTCACTACGGTGATTTTGTAGCCAAA 845
||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 734 CGAAAGGAAGGCA-TATGTGCGTCGAGGCCATCTCTCACTACGGTGATTTTGTAGCCAAA 792
Query 846 GTTGCTGAGCTCTATCCCAATTACAATGTCCCCAAGTTACCGAGAGAGACTCAACCGGGT 905
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 793 GTTGCTGAGCTCTATCCCAATTACAGTGTCCCCAAGTTACCGAGAGAGACTCAACCGGGA 852
Query 906 TTACTTCGAGATAAGAATGCATCAAAGAAGCTCATAGATTTGGGGTTAAAGTTCATTTCC 965
|||||||||| |||||||||| | |||||||| || || || |||||| |||||| ||||
Sbjct 853 TTACTTCGAGCTAAGAATGCAGCCAAGAAGCTGATGGAATTAGGGTTAGAGTTCAGTTCC 912
Query 966 ATGGAGGAAATCATCAAGGAAGGTGTGGAGAGTCTTAAAAGCAAAGGATTTATCTCTTAA 1025
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATGGAGGACATCATCAAGGAAGGTGTGGAGAGTCTTAAAAGCAAAGGATTTATCTCTTAA 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5