BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58500.1
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950561 jgi|Araly1|950561|scaffold_802448.1 865 0.0
> Ahg950561 jgi|Araly1|950561|scaffold_802448.1
Length=586
Score = 865 bits (468), Expect = 0.0
Identities = 522/548 (95%), Gaps = 3/548 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGAGAAACCGCAGCCAAAGCAGCGGCAAGTTCCTCCTCATCCCCGAGCCGGTAC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 21 ATGGAGGGAGAAACCGCAGCCAAAGCAGCGGCTAGTTCCTCCTCATCCCCAAGCCGGTAC 80
Query 61 GAGTCTCAAAAGAGGCGAGACTGGAACACTTTCCTTCAGTATCTAAGGAACCACAAGCCA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GAGTCACAAAAGAGGCGAGACTGGAACACTTTCCTTCAGTATCTAAGGAACCACAAGCCA 140
Query 121 CCTCTGAATCTGTCTCGTTGTAGTGGCGCACACGTCCTTGAGTTCCTTAAGTACCTCGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CCTCTGAATCTGTCTCGTTGTAGTGGCGCACACGTCCTTGAGTTCCTTAAGTACCTCGAC 200
Query 181 CAGTTTGGTAAGACCAAAGTCCATGCCACGGCTTGTCCCTTCTTCGGACAACCTAACCCA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CAGTTTGGTAAAACCAAAGTCCATGCCACGGCTTGTCCCTTCTTCGGACAACCTAACCCA 260
Query 241 CCGTCTCAGTGCACTTGCCCTCTCAAGCAAGCTTGGGGAAGTCTCGATGCTCTCATCGGC 300
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 261 CCGTCTCAGTGCACTTGCCCTCTCAAGCAAGCTTGGGGAAGCCTCGACGCTCTCATTGGC 320
Query 301 CGTCTAAGGGCTGCTTTCGAGGAAATCGGCGGTGGTCTTCCTGAGTCAAACCCTTTCGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CGTCTAAGGGCTGCTTTCGAGGAAATCGGCGGTGGTCTTCCTGAGTCAAACCCTTTCGCT 380
Query 361 GCCAAGGCTGTTAGGATCTATCTTAAAGAAGTCCGTCAAACACAGGCTAAGGCTCGAGGG 420
||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 381 GCCAAAGCTGTTAGTATCTATCTTAAGGAAGTCCGTCAAACTCAGGCTAAGGCTCGAGGG 440
Query 421 ATTCCTTACGACAAGAAGAAAAGAAAACGTCCGCATACAGACACGGCAACTCCAATCGCC 480
||||||||||||||||||||| | ||||| || ||||||| ||| |||||||||||||||
Sbjct 441 ATTCCTTACGACAAGAAGAAACGGAAACGACCTCATACAGCCACAGCAACTCCAATCGCC 500
Query 481 GGTGACGGAGACGATGCCGAAGGAAGTGGTGGTGCTGCTTTGGTCGTTACGGCTGCAACT 540
||||| |||||||| |||| ||||||||||| ||||||||||||| || ||||||||
Sbjct 501 GGTGATGGAGACGACGCCGGAGGAAGTGGTG---CTGCTTTGGTCGTAACCACTGCAACT 557
Query 541 ACGGTATA 548
||||||||
Sbjct 558 ACGGTATA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20031684225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5