BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58520.1
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495972 jgi|Araly1|495972|fgenesh2_kg.8__1788__AT5G58520.1 3206 0.0
> Ahg495972 jgi|Araly1|495972|fgenesh2_kg.8__1788__AT5G58520.1
Length=2113
Score = 3206 bits (1736), Expect = 0.0
Identities = 1995/2120 (94%), Gaps = 18/2120 (1%)
Strand=Plus/Plus
Query 1 AAAACTCCCTGAAATCTGAAAGCACAAAACTTCCATTTTCATCTATCTCAAGTGCTCATT 60
|||| |||||||||||| ||||||| |||||||||||||||| ||||||| ||||||
Sbjct 1 AAAAATCCCTGAAATCTCAAAGCAC---ACTTCCATTTTCATCTCTCTCAAGAGCTCATA 57
Query 61 GTTCATTGTCGACGTACAATGGCTGCAGCCTTGGAGTGCTGGTCGAGTCGTGCCGGAGAT 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 58 GTTCATTGTCGACGTACAATGGCTGCAGCCTTGGAATGCTGGTCGAGTCGTGCCGGAGGT 117
Query 121 GGTGGCGATCCCGACAACGATCTGGTCGATCAGGTACTCATGCGAACGCACGACAGGTCT 180
||||||| ||||||| |||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 118 GGTGGCGGTCCCGACGACGATCTGCTGGATCAAGTACTCATGCGAACGCACGACAGGTCT 177
Query 181 GAGTCCGTAATTACGTCTCTACCTGAGACGAGTTTGGAGGTTGAAGGTTCCACGACGGTT 240
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 178 GAGTCCTTAATTACGTCTCTGCCTGAGACGAGTTTGGAGGTTGAAGGTTCCACGGCGGGT 237
Query 241 TTTGATCAGAGCTCGTCGGCTATGCAGAAGCGGTTTCAGCGTCTCAGCCGCAA-CGTGTC 299
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 238 TTTGATCAGAGCTCATCGGCTATGCAGAAGCGGTTTCAGCGTCTCAGCCG-AATCGTGTC 296
Query 300 AGAGGCGATTGTGTCGCTTAAAAACACGCTTAATCTGGATTCTGCTCGGGATAATCAGAG 359
|||||||||| ||||||||||||| |||||||||| ||||| || |||||||||||||
Sbjct 297 TGAGGCGATTGCGTCGCTTAAAAACTCGCTTAATCTCGATTCCGCGCGGGATAATCAGAC 356
Query 360 TTTCGGCGGAGCTATGACGCCCAAGGCGGAAGTCAGTGGCGGCGGCGGCGGAAGGAAGCT 419
| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 357 TGTCGGCGGAGCTACGACGCCTAAGGCGGAAGTCGGTGGCGGCGGCGGCGGAAGGAAGCT 416
Query 420 CGTTTGGGCTACTGTAGTGAAGAACCTTGCTAAG-ATGTATCCTGGGAGTCAATTACCGG 478
|||||||||||||||||||| |||||||||| || ||||||||||| || || || ||||
Sbjct 417 CGTTTGGGCTACTGTAGTGAGGAACCTTGCT-AGAATGTATCCTGGTAGCCAGTTGCCGG 475
Query 479 AGAAGCTCGTATCAAATCTCAAGAAGCATTACGATTCCTTGCCATTCAGTTATAGTCAGG 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 476 AGAAGCTCGTATCAAATCTCAAGAAGCATTACGATTCCTTGCCCTTCAGTTATAGTCAGG 535
Query 539 CTGATTTCGATATGAAAGAAGTATTTCTACACGTCAAGTTGATAGAACAAGCTGCTGGAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 CTGATTTCGATATGAAAGAAGTATTTCTACACGTCAAGTTGATAGAACAAGCTTCTGGAG 595
Query 599 ATGACAATCCTGTGTTTATGATTCAAGAAGTGTCTACTGAGGAACCTCGAGGTTCCGTGC 658
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| || |
Sbjct 596 ATGACAATCCTGTGTTTATGATTCAAGAAGTATCTGCTGAGGAACCTCGGGGTTCAGTCC 655
Query 659 TCAGACTCACATTCGCCTGTAACTCTTTTCTATCATGGTCAACTATGTCAGGCGTTCTTG 718
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||
Sbjct 656 TCAGACTCACATTCGCCTGTAACTCTTCTCTTTCATGGTCAACTATGTCTGGCGCTCTTG 715
Query 719 ATAGTGCTTCGATTTGTTGCAAGAAGATACAAATCTTT-GAGAAGAAGGGGTTGACTCTC 777
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 716 ATAGTGCTTCGATTTGTTGCAAGAAGATACAAAT-TTTCGAGAAGAAGGGGTTGACTCTC 774
Query 778 GGGGTTGTTCTTCTTCTGGATCAATCTGGGCAACATAGTTTGTTTAAAACCCGGGTAGAA 837
|||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 775 GGGGTTGTGCTTCTTCTGGATCAATCTGGGCAACATAATTTCTTTAAAACCCGGGTAGAA 834
Query 838 AACACCCTCAAGGTTGCAACCAAAAAGCCAAAACCGACATCTGTTAAGCTCCCTTTCGGG 897
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 835 AACGCCCTCAAGGTTGCAACCAAAAAGCCAAAACCGACTTCTGTTAAGCTCCCTTTTGGG 894
Query 898 CTTTGTGGCTGTCAAGAACAGAACGGTGGTGTAGGGGAACTTGGAGGTGTTGAAGAAGAG 957
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 CTTTGTGGCTGTCAAGAACAGAACGGCGGTGTAGGGGAACTTGGAGGTGTTGAAGAAGAA 954
Query 958 TCCATTCAGCATAGTAGTAGGCTAGGGATAGAAAACTTGAATAGTACGATCCAGATTCAG 1017
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 955 TCCATTCAGCATAGTAATAGGCTAGGGATAGAAAATTTGAATAGTACGATCCAGCTTCAC 1014
Query 1018 GTTCCACTTCCGAGTTCTTCATTTGCTGTATCAGTAGATGAATGGCAGACCATCCAATCG 1077
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1015 ATTCCACTTCCGAGTTCTTCATTTGCTGTATCAGTAGATGAATGGCAAACTATCCAATCG 1074
Query 1078 GGTGGCAATGAGATTGGAAAATGGCTATTGAATTCTGATAGTTTTGAGTTCGGTGATCAG 1137
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGTGGCAGTGAGATTGGAAAATGGCTATTGAATTCTGATAGTTTTGAGTTCGGTGATCAG 1134
Query 1138 ATTGGACCAACTTCTCTCAAAGGAATTTTCCGCGGTAAAAGAGTGGGAATCGAGAAACTA 1197
||||||||||||||| |||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 1135 ATTGGACCAACTTCTTTCAAAGGAATTTTCCGAGGAAAAAGAGTGGGAATTGAGAAGCTA 1194
Query 1198 AAAGGTTGTGATAAGGGGAATTCCTATGAGTTTGAGCTCCGAAAAGATTACTTGGAGCTG 1257
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAAGGTTGTGATAAGGGGAATTCATATGAGTTTGAGCTCCGAAAAGATTACTTGGAGCTG 1254
Query 1258 ATGGCTTGTGGACACAAGAGCATTCTGCAATTTTACGGTGTTTGCATCGATGAGAACCAT 1317
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1255 ATGGCTTGTGGACACAAGAGCATTCTGCAATTTTATGGCGTTTGCATCGATGAGAACCAT 1314
Query 1318 GGATTATGCGTTGTGACAAAACTGATGGAAGGTGGGTCACTCCATGAACTGATGTTGAAG 1377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1315 GGATTATGCGTTGTGACAAAACTGATGGAAGGCGGGTCACTCCATGAACTGATGTTGAAG 1374
Query 1378 AATAAGAAGCTTCAAACCAAGCAGATACTGCGAATTGCAATAGACATAGCCGAAGGGCTG 1437
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1375 AGTAAGAAGCTTCAAACCAAGCAGATACTGCGAATTGCTATAGACATAGCCGAAGGGCTG 1434
Query 1438 AAGTTCGTGAATGACCATGGTGTTGCTTATCGGGACCTTAACACACAAAGAATATTACTA 1497
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1435 AAGTTCGTGAATGATCATGGTGTTGCTTATCGGGACCTTAACACACAAAGAATACTACTA 1494
Query 1498 GATAAGCATGGCAATGCATGTTTGGGAAATATTGGGATAGTCACCGCTTGTAAGAGCTTT 1557
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1495 GATAAGCATGGCAATGCATGTTTGGGGGATATTGGAATAGTCACCGCTTGTAAGAGCTTT 1554
Query 1558 GGTGAGGCCGTGGAATATGAAACTGATGGTTATCGATGGCTTGCACCTGAGATCATAGCT 1617
||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1555 GGTGAAGCTGTGGAGTACGAAACTGATGGCTATCGATGGCTTGCACCTGAGATCATAGCT 1614
Query 1618 GGTGACCCGGAAAATACGACAGAGACTTGGATGAGCAATGCTTATAGTTTTGGGATGGTA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GGTGACCCGGAAAATACGACAGAGACTTGGATGAGCAATGCTTATAGTTTTGGGATGGTA 1674
Query 1678 CTGTGGGAGATGGTGACGGGAGAGGCGGCTTATGCATCTTGCTCGCCCGTGCAGGCGGCA 1737
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1675 CTGTGGGAGATGGTGACAGGAGAGGCAGCTTATGCATCTTGCTCGCCCGTGCAGGCAGCG 1734
Query 1738 GTTGGGATAGCGGCTTGTGGCCTGAGACCGGAAATTCCAAAAGAATGCCCTCAAGTCCTG 1797
|||||||| |||||||||||||| |||||||| || ||||| ||||||||||||| ||||
Sbjct 1735 GTTGGGATTGCGGCTTGTGGCCTAAGACCGGATATCCCAAAGGAATGCCCTCAAGCCCTG 1794
Query 1798 AGAACTCTGATGATCAATTGCTGGAACAACTCCCCCTCCAAACGCCCCAACTTCTCTCAT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AGAACTCTGATGATCAATTGCTGGAACAACTCCCCCTCCAAACGCCCCAACTTCTCTCAT 1854
Query 1858 ATCCATAACACGTTACTTCGCGCCGTTTCACGGTAAGTTTGGC-TTGTATTTGATAAGAT 1916
||||||||||| || || |||||||||||||| |||||||||| || ||| || || |||
Sbjct 1855 ATCCATAACACATTGCTCCGCGCCGTTTCACGCTAAGTTTGGCGTT-TATATGGTACGAT 1913
Query 1917 CATATTGTACATTCAGATTGTAACACTTAAATCGTAATTATAT-A--GTATGTACTGATC 1973
||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||
Sbjct 1914 CATATTGTACATTCAGATTGTAACACTAAAATCGTAATTATATTATAGTATGTAATGATC 1973
Query 1974 ATAATAGTGATAT---GAACTGTTGGAAACATAAAGGGGAATGGTGCGTGTAGGTTTGAT 2030
||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1974 ATAATGGTGATATTATGAACTGTTGGAAACATAAAGGGGAAGGGTGCGTGTAGGTTTGGT 2033
Query 2031 TCAATACTTGTTGTTGTGGCC-TTGAGGACCCATCTCTTTTGTCTGTTTTAGGCCGAAAT 2089
| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2034 TTGATACTTGTTGTTGTGGCCCTTGAGGACCCATTTCTTTTGTCTGTTTTAGGCCGAAAT 2093
Query 2090 ATAGAGCAAACTATTATCTC 2109
|||||||||| |||||||||
Sbjct 2094 ATAGAGCAAAATATTATCTC 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5