BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58530.1
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495973 jgi|Araly1|495973|fgenesh2_kg.8__1789__AT5G58530.1 1373 0.0
> Ahg495973 jgi|Araly1|495973|fgenesh2_kg.8__1789__AT5G58530.1
Length=942
Score = 1373 bits (743), Expect = 0.0
Identities = 898/968 (93%), Gaps = 30/968 (3%)
Strand=Plus/Plus
Query 1 AATTTTAGTCTCTCAAAATCTCCACCGTTTCTACCACCGTCAATGTGGCGGCCGTGGCGT 60
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTTTAGTCTCCCCAAATCTTCACCGTTTCTACCACCGTCAATGTGGCGGCCGTGGCGT 60
Query 61 AAATCGTCGGTTAAGATTCACGACACATACTCTCCAACCACCGCTTCCTTCAAAGACATT 120
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCGTCGGTCAAAATTCACGACACATACTCTCCAACCACCGCTTCCTTCAAAGACATC 120
Query 121 CACCATCTCTGCTCCGACGACT-CACCTTCCTTCCCTTCTTCTCCCTCTCCATCTCCAAA 179
|||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||
Sbjct 121 CACCATCTCTGCTCCGACGA-TCCACCTTCCTACCCTTCTTCTCCTTCTCCATCTCCAAA 179
Query 180 AACCGCTTCTAGAGTCTTCCACCGAGTCCGTGCAGCTAATTTGATCCTCAAATCGTGGCC 239
|| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AAACGCTTCTAGAGTTTTCCACCGAGTCCGCGCAGCTAATTTGATCCTCAAATCGTGGCC 239
Query 240 AACTCGTCAATCTAATCACCTCCTCCGCGCAGATTCCGAACCTATCAATCTAAGCCGGAA 299
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 240 TACTCGTCAATCTAATCAGCTCCTCCGCGCAGATTCCGAACCAATCAATCTACGCCGGAA 299
Query 300 TCAAAATCC-AGAATCAGATTCGAAACAATCGAAAACCAAAACCGAACCAGATGTACGGA 358
|| ||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 300 TCTAAA-CCTAGAATCAGATTCAAAACAATCGAAGACCAAAACCGAGCCAGATGTACGGA 358
Query 359 TTTCAATCCCAGGCGCAGAGAAAAGCATTGTCGTATACTTCACAAGCCTACGCGTGGTTC 418
|||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 359 TTTCAATCCCAGGCGCAGAGAACAGCATCGTCGTCTACTTCACAAGCCTCCGTGTGGTTC 418
Query 419 GTCCAACATTCGAAGCCTGCAAATCCGTTACATCGATCCTCCATAGCTTCCCGGTACGAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCCAACATTCGAAGCCTGCAAATCCGTTACATCGATCCTCCATAGCTTCCCGGTACGAA 478
Query 479 TCGACGAACGAGATCTCTCAATGGACGCGTCATTCTCCACCGAGCTACAACGAATCTTCG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGACGAACGAGATCTCTCAATGGACGCGTCATTCTCCACCGAGCTACAACGAATCTTCG 538
Query 539 GGAAGGATCAGAACCAGAACCAGAACCAGGCGAAGACGCCGAAGCTGCCGCGAGTCTTCA 598
|||||||| ||| | | |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 539 GGAAGGAT--GAA--A-A-CCAGAACCAGACGAAGACGCCGAAGCTGCCGCGAGTGTTCA 592
Query 599 TCGGTGGTCGGTACATAGGAGGAGCGGAGGAGGTGAAACAGCTACACGAGATCGGAGAGT 658
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 593 TCGGTGGTCGTTACATAGGAGGAGCGGAGGAGGTGAAACAGCTTCACGAGATCGGAGAGT 652
Query 659 TGAAGAAACTTGTGCAAGAGTTGCCGAAGATTGAACCAGGGGTATGTGAGATGTGTGGTG 718
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGAAGAAGCTTGTACAAGAGTTGCCGAAGATTGAACCAGGGGTATGTGAGATGTGTGGTG 712
Query 719 GTCATAGATTCGTGCCGTGTAAGGATTGTCATGGTAGCCATAAGGTGCATACGGAGAAGC 778
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 713 GTCATAGATTCGTACCGTGTAAGGATTGTCACGGTAGCCATAAGGTTCATACGGAGAAGC 772
Query 779 TAGGGTTCAGAACTTGCTTAACCTGTAACGAGAATGGTCTCGTCAGGTGTTCTTCTTGTT 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 773 TAGGGTTCAGAACTTGCTTAACCTGCAACGAGAATGGTCTCGTCAGGTGTTCTTCTTGTT 832
Query 839 CATTTCCACAATCTCCT-CC-ACCCTAATTCCTAGATTTTCAGtttttttttttCAATTT 896
||||||| || ||||| || | ||||||||||||||||||||||||||||| | |
Sbjct 833 CATTTCCTCA-TCTCCAGCCTAAT-TAATTCCTAGATTTTCAGTTTTTTTTTTT-A-T-- 886
Query 897 CAATTTTCGAATACCAGAAATTGGAATAATTAAATATTGGTTTTTAATCTAATTTTTAAG 956
| ||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 887 -A-----CGA------GAAATTGGAATAATTAAATATTTGTTTTTAATCTAATTTTTCAG 934
Query 957 AAGTTTCC 964
||||||||
Sbjct 935 AAGTTTCC 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35797419063
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5