BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58540.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495975 jgi|Araly1|495975|fgenesh2_kg.8__1791__AT5G58540.1 2525 0.0
> Ahg495975 jgi|Araly1|495975|fgenesh2_kg.8__1791__AT5G58540.1
Length=1808
Score = 2525 bits (1367), Expect = 0.0
Identities = 1675/1822 (92%), Gaps = 28/1822 (2%)
Strand=Plus/Plus
Query 1 ATAATAAACTTCAAACTGTTGTTTCTTTTAGAAAAGAAAAATCTT-AAGAGAGTAATGAA 59
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATAATAAACTTCAAACTGTTGTTGCTTTTCTAAAAGAAAAATCTTAAAGAGAGTAATGAA 60
Query 60 AATTGGTCGTTGGGTTTACGATAATTAAACAAAGGTTGAAAGAGCA-T--CAACCGTTGA 116
|||||||||||||||||| |||||||||| |||||||||||||| | | ||||||||||
Sbjct 61 AATTGGTCGTTGGGTTTATGATAATTAAA-AAAGGTTGAAAGAGTATTAGCAACCGTTGA 119
Query 117 TTAGTCTTCTTAATCCTCAACGACGAATTCAACTGCTCCTCCAATATTCTCTTCCTTCTT 176
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 120 TTAGTCTTCTTGATCCTCAACGACGACTTCAACTGCTCCTCCAACATACTCTTCCTTCTT 179
Query 177 CCTTCTTTCGGAAAC-AACCACAGAAGCAAAGAAATCAATCTCCTATGAGTTCCAAGAGA 235
||||||||||| ||| ||| ||||||||||| |||||||| ||||||||||||||| |||
Sbjct 180 CCTTCTTTCGGTAACAAACAACAGAAGCAAACAAATCAATATCCTATGAGTTCCAATAGA 239
Query 236 CGGCGGAGATTCAATCTCCGAACAGTGTTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 295
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 CGGCGGAGATTCAATCTCCGAACAGTATTCTCCATCATCTTCCTCACCTTTCTTCCTCTG 299
Query 296 AATCTTAACTCTCAAGAGATTGTAGAGGTCTTTGATTCTTCTCAAGATCACTTCTTGATC 355
| |||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||
Sbjct 300 ACTCTTAACTCTCAAGAGATTGTAGAAGTCTTTGGTTCTTCTCAAGATCACTTATCGATC 359
Query 356 CAATCCC-GAGTTTATGCGAACCATCGCAGCCTT-ATCGATACACCTCTTCCTGGCAAAG 413
| | ||| ||||||||| ||||| |||||| ||| || |||||||||||||||||||||
Sbjct 360 C-AGCCCAGAGTTTATGGGAACCGTCGCAG-CTTGATTGATACACCTCTTCCTGGCAAAT 417
Query 414 ACCCTGCCCTTGATGCCTCTCCGCCATCTCCTGAATCCGCTATCCTCAAAGATCCATTGC 473
||||||||| |||||||| ||||||||||| ||||| || ||| ||| |||||| |||
Sbjct 418 CCCCTGCCCTGGATGCCTCCCCGCCATCTCCGGAATCTGCAATCTTCAGAGATCCCCTGC 477
Query 474 TGCCTCCGCCACCACCAGAAGGCAACGAAACCCCGAGCCCTCCTCGAAGTGGTGTGCCAA 533
||||| |||||||| ||||||| || |||||||||||||||||| |||||||||| |
Sbjct 478 CGCCTCAGCCACCACTAGAAGGCGACAAAACCCCGAGCCCTCCTCAAAGTGGTGTGAGAT 537
Query 534 CACAAACACCAGAGACCCCACCTGCTATCACTCCCCTGCCTGTACCACTGGCTCCAGCTC 593
||||||||||||||| ||| |||||||| ||||| ||||| |||| ||||||||| |||
Sbjct 538 CACAAACACCAGAGAACCCTCCTGCTATTACTCCTTTGCCTCTACCTCTGGCTCCACCTC 597
Query 594 CGTCTCCGTCTCCTCCTGTGTCTCCAGGAACTACAAAGAAGTCTCCCAAAGTTTATATGA 653
| ||| | ||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 598 CATCT-C--CTCCTCC---GTCTCCAGAAACTACAAAGAAGTCTTCCAAAGTTTATATGA 651
Query 654 TCGTTGGCATAGTCGGTGGGGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 713
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TCGTCGGCATAGTCGTTGGCGTATTCACAGTCTCGGTAGCATTAATCATCATCTTTCTTA 711
Query 714 TCCTCACTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGCGATGATC 773
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 712 TCCTCAGTCGAAAGATTCCAATCAAGCCTTGGACCAACAGTGGCCAGCTTCGAGATGCTC 771
Query 774 TTATCACAGATGTTCCGAGGCTGCAGCTATCTGAGCTACAAGCAGCCTGCGAAGATTTCA 833
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 772 TTATCGCAGATGTTCCGAGGCTGCAGCTATCTGAGCTGCAAGCAGCCTGCGAAGATTTCA 831
Query 834 GTAATGTCATAGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 893
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTAACGTCATCGGATCTTTCTCAGACGGCACCATTTATAAAGGAACTTTGTCCACTGGTG 891
Query 894 CTGAAATCGCTGTGGTGTCTATTGTGGCCGGTTCTCGTTCAGACTGGTCCACCACCATGG 953
|||||||||| || |||||| | | || ||||||||| ||| |||||||||| ||||||
Sbjct 892 CTGAAATCGCCGTTGTGTCTGTCGCAGCTGGTTCTCGTGCAGCCTGGTCCACCGCCATGG 951
Query 954 ACACACAGTTGCTACAAAAGATGCATAATTTATCCAAAGTGGATCACAAGAACTTTTTGA 1013
| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 952 AAACACAGTTGCTACAAAAGATGCATAACTTATCCAAAGTGGATCATAAGAACTTTCTGA 1011
Query 1014 ATGTGATCGGTTATTGCCTTGAGGAAGAGCCCTTCAAGC-GAATGCTGGTTTTTGAATAC 1072
||||||| |||||||||| | | ||||||||||| || | ||||||||||||||||||||
Sbjct 1012 ATGTGATTGGTTATTGCCATAATGAAGAGCCCTTTAA-CAGAATGCTGGTTTTTGAATAC 1070
Query 1073 GCTCCCAATGGATCACTCTCCGAGCATCTGCACTCTCAATACGTGGAGCACTTGGACTGG 1132
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 GCTCCCAATGGATCCCTGTCCGAGCATCTGCACTCTCAACACGTGGAGCACTTGGACTGG 1130
Query 1133 CCTACCAGACTCAGAATCGTCATGGGAATAGCTTACTGTCTAGAGCACATGCACAATCTT 1192
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1131 CCTACCAGACTCAGAATCTTCATGGGAATAGCTTACTGTCTAGAGCACATGCTCAATCTC 1190
Query 1193 AACCCACCCATCTTGCTCTCCAATTTGGACTCCTCTTCTGTGTACTTGACTGAAGACAAC 1252
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1191 AACCCACCCATCTTGCACTCTAATTTGGACTCCTCTTCTGTCTACTTGACTGAAGACAAC 1250
Query 1253 GCCGCCAAAGTCTCTGACTTTTCTGTCATCAACTCCATATTTCCCTCTAAGGAGGGTTCC 1312
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1251 GCCGCCAAAGTCTCCGACTTTTCTGTCATCAACTCCATCTTTCCCGCTAAGGAGGGTTCC 1310
Query 1313 TCGAGCAAGAACCTTCTAGAACCCTCGTTACTTGATCCCCATACCAACGTCTTTAACTTT 1372
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1311 TCGAGCAAGAACCTTCTAGAACCCTCATTACTTGATACCCAGACCAACGTCTTTAACTTT 1370
Query 1373 GGTGCCGTTTTATTCGAAATCATCAGTGGAAAATTACCAGACCCGGATTCTATGCTTCTC 1432
||||||||| | ||||||||||||||||| || |||||||||||||||||| || |||||
Sbjct 1371 GGTGCCGTTGTGTTCGAAATCATCAGTGGGAAGTTACCAGACCCGGATTCTTTGTTTCTC 1430
Query 1433 GAACCCAAGCCCACAAGAGATATTGTGGACCCGACACTGAAAACATTTCAGGAAAATGTT 1492
|| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1431 GAGCCCAAGCCCGCAAGAGATATTGTGGACCCGACACTGAAAACGTTTCAGGAGGATGTT 1490
Query 1493 GTTGAGAGACTGTTGGAGGTGGTTAGGCAGTGTTTGAATCCATACTCAGATCAGCGGCCG 1552
|||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||
Sbjct 1491 GTTGAGAGACTGTTGGAGGTGGTTAGACAGTGTATGAATCCACACTCAGCTCAGCGGCCA 1550
Query 1553 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 ACAATGAGAGAGGTTGTGGTGAAATTGAGAGAGATAACTGGAATAGAAGCTGACGCAGCA 1610
Query 1613 ATGCCGAGGCTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1672
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ATGCCGAGACTGTCTCCACGGTGGTGGACAGAGCTGGAGATCATATCCACAGAAGGAAAC 1670
Query 1673 TAAAGAGAAAGGAGCCGTCCTTTTAGGTGTCCCCTGTATATATA--CACAAATGACACTG 1730
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1671 TAAAGAGAAAGAAGCCGTCCTTTTAGGTGTCCCCTGTATATATATACACAAATGACACTG 1730
Query 1731 TGAAGTGATGATCATCttttttt---GTTCCTCTGCATTAAAAGACTCTTTACTGTATA- 1786
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1731 --AAGTGATGATCATCTTTTTTTTTTGTTCCTCTGCATTAAAAGACTCTTCACTG-ATAC 1787
Query 1787 TACTAAAAAGTTGGTTTTGCAT 1808
|| ||||||||||||||||||
Sbjct 1788 TAA-AAAAAGTTGGTTTTGCAT 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5