BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58560.1
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332145 jgi|Araly1|332145|fgenesh1_pm.C_scaffold_8001488 1096 0.0
> Ahg332145 jgi|Araly1|332145|fgenesh1_pm.C_scaffold_8001488
Length=1524
Score = 1096 bits (593), Expect = 0.0
Identities = 758/835 (91%), Gaps = 21/835 (3%)
Strand=Plus/Plus
Query 134 ACTACTACAAAGctctccgttctctgctgctctttcatttcatctcctctcgttgactct 193
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 7 ACTACTACTAAGCTCTCCGTTCTCTGCTGCTCTTTCATTTCATCTCCTCTCATTGACTCT 66
Query 194 cctccttctctcgccttcttctctc-c-GATTC-C-ACGATTCCTC-ACTGTCCGAATCG 248
|||||||||| |||| | || ||| | ||| | ||||||| | | | ||| ||
Sbjct 67 CCTCCTTCTCCCGCCAACATCCCTCGCTTCTTCTCTCCGATTCCACGA-T-TCC---TCA 121
Query 249 CGACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCCACCAAAATCCGCAAGTCTTCACTCG 308
| |||||||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||
Sbjct 122 CTACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCGACCGAAATCCGTAAGTC-T-ACTCG 179
Query 309 CCGCCGTGATGTTTCCGGAAAATT-CGGTTTTATCAGATGTCTGCGCGTTTGGAGTCACT 367
| | | | | || || | | | |||||||||||||||||||||||
Sbjct 180 GAGTC-TAACG---ACGTCGTCTTCCACTCGCCGC-CATGTCTGCGCGTTTGGAGTCACT 234
Query 368 AGCATCGTTGCGTTCTCGTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCATCTTC 427
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 AGCATCGTTGCGTTCTCTTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCCTCTTG 294
Query 428 GACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTGC 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTGC 354
Query 488 TGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTCGCATCTCTTGTACCTGGACTC 547
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 TGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTTGCATCTCTTGTACCTGGACTC 414
Query 548 AATATAGTAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACAATCAAG 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 AATATAATAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACGATCAAG 474
Query 608 TCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGGCCGCTTTACTATGTACTG 667
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 475 TCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGACCGCTTTACTATGCACTG 534
Query 668 TCAATCACATCAGCCTGCATCTACTATTGGAAATCATCCCCAATCGCGATTGCGGTGATA 727
|||||||||||||||||||||| ||||||||| |||||||||||||| ||||| || |||
Sbjct 535 TCAATCACATCAGCCTGCATCTTCTATTGGAAGTCATCCCCAATCGCCATTGCAGTCATA 594
Query 728 TGCAACCTTTGCGCAGGAGATGGTATGGCTGACATTGTGGGTCGGCGGTTTGGAACAGAG 787
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 TGCAACCTTTGCGCAGGAGATGGTATGGCTGACATCGTGGGTCGGCGGTTTGGAACAGAG 654
Query 788 AAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCCGGG 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCGGGG 714
Query 848 TTTCT-AGCATCTGTTGCGTATATGTACTACTTTGCTTCATTTGGTTACATCGAGGATAG 906
|| || ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 715 TT-CTTAGCATCTGTTGGGTATATGTTCTACTTTGCTTCATTCGGTTACATCAAGGATAG 773
Query 907 CGGGGGAATGATTCTTCGTTTCCTCGTCATCTCTATAGCATCAGCTCTTGT-GGA 960
||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 774 CGGGGGAATGATTCTTCGTTTCCTCATCATCTCTTTAGCATCAGCTCTTGTCGGA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50474742108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5