BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58580.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495981 jgi|Araly1|495981|fgenesh2_kg.8__1797__AT5G58580.1 1216 0.0
> Ahg495981 jgi|Araly1|495981|fgenesh2_kg.8__1797__AT5G58580.1
Length=930
Score = 1216 bits (658), Expect = 0.0
Identities = 853/942 (91%), Gaps = 33/942 (4%)
Strand=Plus/Plus
Query 1 ATGAGTGAAGAAGACGGCGGCTCAATGAGTGTCAAAAGCAGTCTCTCAAGCTTCCTCAAG 60
||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGCGAAGAAGAAGACGGCTCAATGAGTGTTAAAAGCAGTCTCTCAAGCTTCCTCAAG 60
Query 61 ATCTTATCTTCTTACAATTCCAATGTTCTTTTAGCTGCTCTAGTCTTCCTTCTCTTAGTC 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTATCTTCTTACAACTCCAATGTCCTTTTAGCTGCTCTAGTCTTCCTTCTCTTAGTC 120
Query 121 GTCCTCTTCGTCTTGCTTCTCCATTTCTACGCTCGCTTTTTCTGGTCTCCCTCTCATCAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCCTCTTTGTCTTGCTTCTCCATTTCTACGCTCGCTTTTTCTGGTCTCCCTCTCATCAA 180
Query 181 GATTTCTCCGCCGCCGCTAGACATCGCCGGAGAAGACGAAGAAACCGGAGAAGAACAGTG 240
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTCTCCGCCGCCGGTAGAAACCGCCGGAGAAGACGAAGAAACCGGAGAAGAACAGTA 240
Query 241 ACGACAACAAGAATCATACCTTCTCTCCCACTCGGAGGTTTTGATGATGGAG-T-AT-CT 297
||||||||||||||||||||||||||| ||||||||||||| |||| ||||| | || ||
Sbjct 241 ACGACAACAAGAATCATACCTTCTCTCTCACTCGGAGGTTTCGATGGTGGAGTTAATGCT 300
Query 298 --T-CTCCAGCTGCTA---CTGCAACAAGGGATGACAAAGGTTTGGATTCTTCAGTGATT 351
| || | ||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CCTGCTACTGCTACTACTGCTGCAACAAACGATGACAAAGGTTTGGATTCTTCAGTGATT 360
Query 352 TCTTCAATTCCTCTGTTTGTTTACGAAGAAAACGAGGAAGAGGAGGATGAAGAAGAAGAG 411
||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 361 TCTTCGATTCCTCTGTTTGTTTACGAAGAAGACGAGGAAGAGGAGGAAGAAGAAGAAGAG 420
Query 412 TGTGTGATATGTTTGGGGTTATGGGAAGCTGGAGATTTTGGTAGAAAGTTGAGAAATTGT 471
|||| |||||||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 TGTGCGATATGTTTGGGTTTGTGGGAAGCTGGTGATTTTGGAAGAAAGTTGAGAAATTGT 480
Query 472 GGACATGGGTTTCACGTAGAGTGTATAGATATGTGGTTGTCCTCTCATTCCACGTGTCCT 531
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 481 GGACATGGGTTTCACGTAGAGTGTATAGATATGTGGTTGTCTTCTCATTCTACTTGTCCT 540
Query 532 CTCTGTCGATCCCCTGTTCTTGCCGCCGTCTCCGATGAAGAAAATCTTAAGCTGGCCGTT 591
|||||||||||||||||||| |||| | ||||||||||||||| || |||| |||||||
Sbjct 541 CTCTGTCGATCCCCTGTTCTCGCCGTGGCCTCCGATGAAGAAAACCTCAAGCCGGCCGTT 600
Query 592 AACGCCGTCGAAGAAGAAGCAGAGGTTAGATTACAAATGTCTCCAGCGGGAGAAAACGAG 651
|||||||||||||||||||||||||||||||| ||||| | |||| | |||||| ||||
Sbjct 601 AACGCCGTCGAAGAAGAAGCAGAGGTTAGATTGCAAATTTTTCCAACCGGAGAAGACGAA 660
Query 652 AGCAACGTCTCCGGTGATCGGAGAGTTTCACTGTCTCTTTCTGTAATGGA--AG-ATGAT 708
| |||| | | |||||||| ||| ||||| |||||||| |||||||||| || |||||
Sbjct 661 AATAACG-C-C-GGTGATCGAAGATTTTCAGTGTCTCTTCCTGTAATGGAGGAGGATGAT 717
Query 709 CTCAAAACAGGGGATGA---CG-A----T-GGAGAAGAAGAGGTTAGAATTGAAGTGTTT 759
||||||||||||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 718 CTCAAAACAGGGGATGATGACGGAGACGTCGGAGAAGAAGAGGTTAGAATTGAAGTGTTT 777
Query 760 GATGATGATGAGGAGATCAACGATGGAGGAACAAGAAGTGATCGGAGAAGATCAATGTCA 819
|||||||| | | ||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 778 GATGATGA-G-G-AGATCAACGGTGGAGGATCAACAAGTGATCGGAGAAGATCAATGTCA 834
Query 820 ATGACGTCATCAGCATCGAGTTCGTTGATGAGGATGTTAagtagtagtagtagtagATCG 879
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct 835 ATGACGTCATCAGCATCGAGTTCGTTGATGAGAATGTTAAGTAGTAGTAG-A-T----CG 888
Query 880 GAGCGTAACAAAGTGTTCCCGACGGCGAGGCAAGATTCATCT 921
||||||| |||||||||||||||||||||||||||||| |||
Sbjct 889 GAGCGTAGCAAAGTGTTCCCGACGGCGAGGCAAGATTCGTCT 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5