BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58600.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495984 jgi|Araly1|495984|fgenesh2_kg.8__1800__AT5G58600.1 2163 0.0
Ahg933489 jgi|Araly1|933489|scaffold_401477.1 117 2e-25
> Ahg495984 jgi|Araly1|495984|fgenesh2_kg.8__1800__AT5G58600.1
Length=1381
Score = 2163 bits (1171), Expect = 0.0
Identities = 1321/1392 (95%), Gaps = 16/1392 (1%)
Strand=Plus/Plus
Query 1 ATTATTTTACAGCTTCC-TTTTTTGTTTTCCACGAAAAAGCAAAAGA-ATGGGTTCTCTT 58
||||||||||||||||| ||||||||||||| ||| ||||||||| | ||||||||||||
Sbjct 1 ATTATTTTACAGCTTCCTTTTTTTGTTTTCCGCGAGAAAGCAAAAAAGATGGGTTCTCTT 60
Query 59 CTTCCTCTTCTTGGCATCTCAGTAGTCTCCGCCATTTTCTTTCTGGTT-CTTCAACAACC 117
| | ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 61 C-T--TCTTCTTGGCATCTC---AGTCTCCGCCATTTTCTTTCT-GTTGCTTCAACAACC 113
Query 118 AGAACAATCTTCTTCAGCCATTATACTGAGCTTGAAGAAACGCCATGGAAGCTCCTCTGG 177
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 114 AGAACAATCTTCTTCAGCCATTATACTGAGCTTGAAGAAACGCCATGGAAG---CTCTGG 170
Query 178 TAGTAGTGGTAACCAGTACAGTTCAAGCAGACCATCAGCTGGTTTCCAAGGGAACAGGAG 237
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 171 TAGTAGTGGTAACCAGTACAGCTCGAGCAGACCATCAGCTGGTTTCCAAGGGAACAGGAG 230
Query 238 CACGTGCTCTCTCTTCCTCGGCACGTGGGTTCGTGATAACTCTTATCCTCTCTATAAACC 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 231 CACGTGCTCTCTCTTCCTCGGCACGTGGGTTCGTGATAACTCTTACCCTCTCTATAAACC 290
Query 298 GGCGGATTGTCCCGGCGTCGTTGAGCCTGAGTTCGATTGTCAGATGTACGGTCGTCCTGA 357
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 291 GGCGGATTGTCCCGGCGTCGTTGAGCCTGAGTTCGATTGCCAGATGTACGGACGTCCTGA 350
Query 358 CTCTGACTACCTCAAGTATCGATGGCAACCTCAGAATTGCAATTTACCCACGTTCAATGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTCTGACTACCTCAAGTATCGATGGCAACCTCAGAATTGCAATTTACCCACGTTCAATGG 410
Query 418 TGCTCAGTTTCTGTTGAAAATGAAGGGCAAAACCATAATGTTTGCGGGTGATTCATTGGG 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGCCCAGTTTCTGTTGAAAATGAAGGGCAAAACCATAATGTTTGCGGGTGATTCATTGGG 470
Query 478 GAAGAATCAATGGGAGTCTTTGATCTGCCTTATTGTTTCATCTGCACCGTCCACTCGGAC 537
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 471 TAAGAATCAATGGGAGTCTTTGATCTGTCTCATTGTTTCATCTGCACCGTCCACTCGGAC 530
Query 538 AGAAATGACCAGAGGCTTGCCTCTCTCCACCTTCAGATTCTTGGATTATGGGATAACAAT 597
||||||| |||||| | ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 531 CGAAATGAGGAGAGGCCTCCCTCTTTCCACCTTCAGATTCTTGGATTATGGGATAACCAT 590
Query 598 GTCATTTTACAAAGCTCCGTTCTTGGTGGACATAGATGCTGTTCAAGGCAAGCGTGTGTT 657
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 GTCGTTTTACAAAGCTCCGTTCTTGGTGGACATAGATGCTGTTCAAGGCAAGCGAGTGTT 650
Query 658 GAAGCTGGATGAGATCTCTGGTAATGCCAATGCTTGGCATGACGCTGATCTCCTCATCTT 717
||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 651 GAAACTAGATGAGATCTCTGGCAATGCCAACGCTTGGCATGACGCTGATCTCCTCATCTT 710
Query 718 CAACACTGGTCACTGGTGGAGCCACACCGGATCTATGCAAGGATGGGACTTGATTCAATC 777
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 711 CAACACCGGTCACTGGTGGAGCCACACCGGATCTACGCAAGGATGGGACTTGATTCAATC 770
Query 778 AGGCAATTCTTATTACCAAGACATGGACCGTTTTGTGGCAATGGAGAAAGCACTTCGTAC 837
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 771 AGGCAATTCTTATTACCAAGACATGGACCGTTTCGTCGCAATGGAGAAAGCACTTCGTAC 830
Query 838 TTGGGCGTATTGGGTCGAAACTCACGTTGATAGATCCCGAACACAAGTCTTGTTCCTCTC 897
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTGGGCTTATTGGGTCGAAACTCACGTTGATAGATCCCGAACACAAGTCTTGTTCCTCTC 890
Query 898 CATTTCTCCAACACACGACAACCCGAGTGACTGGGCGGCATCATCGTCTTCAGGATCCAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CATTTCTCCAACACACGACAACCCGAGTGACTGGGCGGCATCATCGTCTTCAGGATCCAA 950
Query 958 GAACTGCTACGGAGAAACAGAACCGATCACAGGAACAGCTTATCCAGTGAGCTCCTACAC 1017
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 951 GAACTGCTACGGAGAAACAGAACCAATCACAGGAACAGCTTATCCAGTTAGCTCATACAC 1010
Query 1018 AGATCAGCTAAGATCAGTGATTGTTGAAGTGCTTCACGGGATGCACAATCCGGCGTT-TC 1076
|||||||||||||||||||||||||||||| |||||||| ||||| ||||| || || ||
Sbjct 1011 AGATCAGCTAAGATCAGTGATTGTTGAAGTCCTTCACGGTATGCATAATCCTGC-TTATC 1069
Query 1077 TTCTCGACATAACACTCCTCTCTTCCCTAAGAAAAGACGGTCATCCGTCAGTATACAGCG 1136
||||||||||||| ||||| ||||| | |||||||||||||| |||||||| |||||||
Sbjct 1070 TTCTCGACATAACGCTCCTGTCTTCATTCAGAAAAGACGGTCACCCGTCAGTCTACAGCG 1129
Query 1137 GCCTCATTAGCGGTTCACAAAGGTCTAGACCAGACCAGTCTGCAGATTGTAGCCATTGGT 1196
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GTCTCATTAGCGGTTCACAAAGGTCTAGACCAGACCAGTCTGCAGATTGTAGCCATTGGT 1189
Query 1197 GTTTGCCTGGTTTACCTGATACATGGAACCAGTTGTTGTATACGCTTCTCATCTATTAGC 1256
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GTTTGCCGGGTCTACCGGATACATGGAACCAGTTGTTGTATACGCTTCTCATCTATTAGC 1249
Query 1257 TTCTTTTTAAATCTCTTTCCATCAAATTATTCGGTTAGTAATATTTTAACACATTCGAAG 1316
|||||||||| |||| ||| |||||||||| ||||||| |||||||||||||||| ||||
Sbjct 1250 TTCTTTTTAATTCTCCTTCAATCAAATTATCCGGTTAGAAATATTTTAACACATTTGAAG 1309
Query 1317 AGAGAATCTTAA-GATTAATCACGGAATCAGTCAATTGTATAAACTTTTTGAGGAAATTT 1375
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AGAGAATCTTAAAGATTAATCACGGAATCAGTCAATTGTATAAACTTTTTGAGGAAATTT 1369
Query 1376 TCTTTCAAATGA 1387
|||||| |||||
Sbjct 1370 TCTTTCTAATGA 1381
> Ahg933489 jgi|Araly1|933489|scaffold_401477.1
Length=1230
Score = 117 bits (63), Expect = 2e-25
Identities = 333/456 (73%), Gaps = 47/456 (10%)
Strand=Plus/Plus
Query 335 TGTCAGATGTACGGTC-GTCCTGACTCTGACTACCTCAAGTAT-CGATGGCAACC--TCA 390
||||||| |||||| | | |||||||| ||||| ||||||| | || ||| |||| ||
Sbjct 275 TGTCAGACGTACGG-CAGACCTGACTCCGACTATCTCAAGT-TCCGGTGGAAACCATTC- 331
Query 391 GAATTGCAATTTACCC-ACG-TTCAATGGTGCT-CAGTTTCTGTTGA-AAATGAAGGG-C 445
|| |||||| | ||| | | |||||||| | | ||||||| | ||||| |||| |
Sbjct 332 -AACTGCAATGT-CCCTA-GATTCAATGG-GGTGAAGTTTCT-ACAAGAAATG-AGGGAC 385
Query 446 AAAACCATAATGTTTGCGGGTGATTCATTGGGGAAG-AATCAATGGGAGTCTTTGATCTG 504
||||| |||||||| | ||||||||||| ||| || || ||||||||||| ||||||||
Sbjct 386 AAAACGATAATGTTCGTTGGTGATTCATT-GGGTAGAAACCAATGGGAGTCGTTGATCTG 444
Query 505 CCTTATTGTTTCATCTGCACCGTCCACTCGGACAGAAATGA-CCA-GAGGCTTGCCTCTC 562
| || |||||| |||||||||| | ||| | || | || || | | ||||||
Sbjct 445 TATGATCACTTCATCAGCACCGTCCATTAATACACACATCATTCATGAAG-AT-CCTCTC 502
Query 563 TCCACCTTCA-GATTCTTGGATTA-TGGGAT-AACAATGTCATTTTACAAAGCTCCGT-T 618
|| ||||||| ||| ||| || || | | || | ||||||| || | |||||| | |
Sbjct 503 TCTACCTTCATGATCCTT-GACTACAACG-TGAA-AGTGTCATTCTATAGAGCTCCTTAT 559
Query 619 CTTGGTGGACATAGATGCTGTTCAAGGCAAG-CGTGTGTTGAAGCTGGATGAGATCTCTG 677
||| || |||||||| |||| || ||| | | || || || || || ||||||
Sbjct 560 CTT-GTAGACATAGACAAAATTCACGGAAAGACAACTCTT-AAACTCGACGAAATCTCT- 616
Query 678 GT-AATGC--C-AATGCTTGGCATG-AC-GCTGATC-TCCTCA-TCTTCAACACTGGTCA 729
|| |||| | | ||||||| | || || || | | || | | ||||||||||||||
Sbjct 617 GTCGATGCATCGACCGCTTGGC--GCACAGCCGA-CGTTCT-ATTGTTCAACACTGGTCA 672
Query 730 CTGGTGGAGCCACACCGGATCTATGCAAGGATGGGA 765
||||||||||||||| || ||| | | ||| |||||
Sbjct 673 CTGGTGGAGCCACACAGGGTCTTTACGAGGGTGGGA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5