BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58620.1
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495985 jgi|Araly1|495985|fgenesh2_kg.8__1801__AT5G58620.1 2961 0.0
> Ahg495985 jgi|Araly1|495985|fgenesh2_kg.8__1801__AT5G58620.1
Length=2111
Score = 2961 bits (1603), Expect = 0.0
Identities = 1860/1979 (94%), Gaps = 38/1979 (2%)
Strand=Plus/Plus
Query 107 AATTGAGTACTCGTTTAAAGGAAGTGAAGAGCGGTTTTTTGGTAGTGGTGGTCGAGAAAA 166
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 62 AATTGAGTA---GTTTAAAGGAAGTGAAGAGCGG-TTTTTGGTGGTGGTGGTCGAGAAAA 117
Query 167 GAGAGAGTTTGTC-TCTGTGACTCAG-AGTGAAATCAATAGAGCGGGAAAAGATTGTTGC 224
||||| ||| || ||| | | | |||||||||| | ||||||||||||||||||||
Sbjct 118 GAGAG-CTTTTTCTTCTAT-TTTTTGCAGTGAAATCATTCGAGCGGGAAAAGATTGTTGC 175
Query 225 ttttttttGCCATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAAT 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ---TTTTTGCCATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAAT 232
Query 285 CATCAGCCTGCAATGATTTGTCCGGTTTTAAGTCTCTAGTTGAAGAAGAAGGTCTTGAGA 344
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 233 CATCGGCCTGCAATGATTTGTCTGGTTTTAAGTCTCTAGTTGAAGAAGAAGGTCTCGAGA 292
Query 345 GCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTG 352
Query 405 AGGAGAGGACGCCTCTTATGATTGCTGCCTTGTTTGGAAGCAAAGAGGTTGTTGATTACA 464
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 353 AGGAGAGGACGCCTCTTATGATCGCTGCCTTGTTTGGAAGCAAAGAGGTCGTTGATTACA 412
Query 465 TCATTAGTACTGGTCTTGTTGACGTGAACCGCTCTTGTGGCTCTGATGGTGCCACGGCTC 524
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 413 TCATTAGTACTGGTCTTGTTGACGTGAACCGGTCTTGTGGCTCTGATGGTGCCACGGCGC 472
Query 525 TTCACTGTGCGGTCTCTGGCTTGTCTGCCAATAGCCTTGAGATTGTTACTCTTCTGCTGA 584
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 473 TTCACTGTGCGGTCTCTGGCTTGTCTGCGAATAGCTTTGAGATCGTTACTCTTCTGCTGA 532
Query 585 AGGGCTCTGCGAATCCGGATTCTTGTGATGCTTATGGTAACAAGCCTGGAGATGTGATTT 644
||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 533 AGGGCTCTGCGGATCCGGATTCTTGTGATGCTTATGGCAACAAGCCTGGAGACATGATTT 592
Query 645 TCCCTTGTTTGAGTCCGGTTTTTAGCGCGAGGATGAAGGTTTTGGAGCGTTTGTTGAAAG 704
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 593 TCCCGTGTTTGAGTCCGGTTTTTAGCGCAAGGATGAAGGTTTTGGAGCGTTTGTTGAAAG 652
Query 705 GAAATGATGATTTGAATGAAGTTAATGGGCAAGAAGAAAGCGAGCCAGAGGTTGAGGT-- 762
|||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 653 GAAATGATGATTTGAATGAAGTTAATGGGCAAGAAGAAGGAGAGCGAAAGGTTGAGGTAG 712
Query 763 ---T-GAGGTTGAGGTTTC-G-----CCTCCTCGGGGGTCTGAGAGGAAGGAGTATCCGG 812
| ||||| |||||||| | ||||||||||| |||||||||||||||||||| |
Sbjct 713 AGGTAGAGGTAGAGGTTTCTGTTTCACCTCCTCGGGGTTCTGAGAGGAAGGAGTATCCTG 772
Query 813 TTGATCCAACGCTTCCTGATATCAAGAACGGTGTATATGGGACGGATGAGTTCCGGATGT 872
||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 773 TTGATCCCACGCTTCCAGATATCAAGAACGGTATCTATGGGACGGATGAGTTCCGGATGT 832
Query 873 ATGCTTTCAAGATCAAGCCGTGCTCTAGAGCATACTCTCACGACTGGACGGAATGTCCC- 931
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 833 ATGCTTTTAAGATCAAGCCGTGCTCTAGAGCATACTCGCACGACTGGACAGAATG-CCCG 891
Query 932 TTTGTTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCGAGGAAGTACCATTATAGTTGT 991
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 892 TTTGTTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCAAGGAAGTACCATTACAGCTGT 951
Query 992 GTCCCTTGTCCTGAATTCCGGAAGGGGTCTTGTTCCAGAGGTGATACTTGCGAGTATGCT 1051
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 952 GTCCCGTGTCCTGAATTCCGGAAAGGGTCTTGTTCCAGAGGTGATACTTGTGAGTATGCT 1011
Query 1052 CATGGTATCTTTGAGTGCTGGCTTCACCCGGCTCAGTACCGGACTCGTCTCTGCAAGGAC 1111
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1012 CACGGTATCTTTGAGTGCTGGCTTCACCCAGCTCAGTACCGGACCCGTCTCTGCAAGGAC 1071
Query 1112 GAGACGAATTGCTCGAGAAGAGTTTGTTTCTTTGCCCACAAACCCGAGGAGCTGCGTCCT 1171
||||||||||| |||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct 1072 GAGACGAATTGTTCGAGAAGAGTTTGTTTCTTTGCCCATAAACCTGAAGAACTGCGGCCG 1131
Query 1172 TTGTACCCTTCAACTGGATCAGGTGTTCCGTCCCCGCGGTCTTCCTTCTCATCTTGCAAT 1231
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1132 TTGTACCCTTCAACTGGATCAGGTGTTCCTTCCCCGCGGTCTTCCTTCTCATCTTGCAAT 1191
Query 1232 TCCTCGACC-GCTTTCGACATGGGACCGATTAGTCCGCTTCCTATCGGAGCAACAACCAC 1290
|||||| || ||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1192 TCCTCG-CCTGCTTTCGACATGGGACCGATTAGCCCACTTCCTATCGGAGCATCAACCAC 1250
Query 1291 ACCTCCTTTGAGTCCTAACGGTGTATCCTCTCCAATAGGTGGAGGAAAAACGTGGATGAA 1350
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1251 ACCTCCTTTGAGTCCTAACGGCGTATCCTCTCCAATGGGTGGCGGAAAAACGTGGATGAA 1310
Query 1351 CTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATT 1370
Query 1411 GAATGCAAGAGAAATCGATTTCTCTGAAGAGATGCAAAGTCTTACTTCTCCAACTACATG 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GAATGCAAGAGAAATCGATTTCTCTGAAGAGATGCAAAGTCTTACTTCTCCAACTACATG 1430
Query 1471 GAACAACACGCC-A----A--TG--TCATCTCCATTCTCCGGAAAGGGCATGAACAGGCT 1521
|||||||||||| | | || |||||||||||||||||||||||||||||||||||
Sbjct 1431 GAACAACACGCCCATGTCAGCTGCGTCATCTCCATTCTCCGGAAAGGGCATGAACAGGCT 1490
Query 1522 TGCAGGAGGAGCAATGAGCCCGGTGAATAGTCTCAGTGATATGTTTGGGACAGAGGATAA 1581
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1491 TGCGGGAGGAGCAATGAGCCCGGTGAATAGCCTCAGTGATATGTTTGGGACAGAGGATAA 1550
Query 1582 TACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAACAGTCT 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAACAGTCT 1610
Query 1642 TTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCCTCCGCAGTCTTGGC 1701
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1611 CTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCATCCACAGTCTTGGC 1670
Query 1702 TTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGCCAAAGCTTCATAGAACGCAACAACGG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1671 TTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGCCAAAGCTTCATAGAACGCAGCAATGG 1730
Query 1762 ACTGAATCACCATCCCGCAATCTCTTCCATGACTACAACTTGTTTAAACGATTGGGGCTC 1821
| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1731 ATTGAATCACCATCCTGCAATCTCCTCCATGACTACAACTTGTCTAAACGATTGGGGCTC 1790
Query 1822 ATTGGATGGGAAGCTTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATC 1881
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 ATTGGACGGAAAACTTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATC 1850
Query 1882 CACTTCTTTCCGTCTCAGAGCCGGTGGCATGGAATCAAGACTG-CCTAACGAAGGGACTG 1940
||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1851 CACTTCTTTCCGTCTTAGAGCCGGTGGCATGGAATCAAGACTGACC-AACGAAGGGACCG 1909
Query 1941 GGCTCGAAGAGCCAGATGTCTCATGGGTGGAGCCGCTGGTGAAAGAGCCACAGGAGACAA 2000
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1910 GGCTCGAAGAGCCAGATGTCTCTTGGGTGGAGCCGTTGGTGAAAGAGCCACAGGAGACAA 1969
Query 2001 GACTAGCTCCGGTTTGGATGGAGCAATCATACATGGAGACAGAACAGACCGTGGCTTGA 2059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 GACTAGCTCCGGTTTGGATGGAGCAATCATACATGGAGACAGAACAGACCGTGGCTTGA 2028
Score = 139 bits (75), Expect = 9e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 2416 ATTTACACTTGTGAAGTTAGGGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 2475
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2028 ATTTACACTTGTGAAGTTAGTGAAAGTGTTGTAATTGTTTCTTCTAAGAGTTGATCTAAG 2087
Query 2476 ATGTTTGAGACTATATCTTCGCTT 2499
|||||| |||||||||| ||||||
Sbjct 2088 ATGTTTAAGACTATATCGTCGCTT 2111
Score = 95.3 bits (51), Expect = 2e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1 ATTTTGACCTTAAGAAGAAAGTGACAAGGAGAGGAAGAAGAAGaaaaaaaa 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTGACCTTAAGAAGAAAGTGACAAGGAGAGGAAGAAGAAGAAAAAAAA 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94197175885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5