BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58640.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495986 jgi|Araly1|495986|fgenesh2_kg.8__1802__AT5G58640.2 1358 0.0
> Ahg495986 jgi|Araly1|495986|fgenesh2_kg.8__1802__AT5G58640.2
Length=881
Score = 1358 bits (735), Expect = 0.0
Identities = 841/891 (94%), Gaps = 12/891 (1%)
Strand=Plus/Plus
Query 53 ACTCTCTCGTTCCGTCTTCTCCGATTCGCTTTACACTACTTCTTCCCTCGtctctctctc 112
|||||||| |||| |||||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 1 ACTCTCTCCTTCCTTCTTCTCCGATTCGCTTTACAC-A--ACTTCCGTCGTC-CTCTCTC 56
Query 113 tcGCGCTTCACTGTGAATTAATCGAGAGATCTAAATATCCGCCATGGACAGAGCACAATT 172
| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 57 T--CGCTTGACTGTGAATTAATCG-GAGATCAAAATATCCGCCATGGACAGAGCACAATT 113
Query 173 GATCTTGTTAGGTCTACCTATATTCTTGTTTTGTTCGGATCTCTTCAACCTCTTCACTCC 232
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 114 GATCTTGTTAGGTCTACCTATATTCTTATTCTGTTCGGATCTCTTCAACCTTTTCACTCC 173
Query 233 TCCGCCTCCTAAACCTCAGCCTCACCGTCCTCATCAGCCACCGCATATTCCTCACCAGCA 292
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 174 TCCGCCTCCGAAACCTCAGCCTCACCGTCCTCATCAGCCACCGCATATCCCTCACCAGCA 233
Query 293 TCGTCCTAATGCGATCATCCCCGAAACCCTAGACTTTCCTTCACAGAAGACAAGTGGCTT 352
||||||| | |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 234 TCGTCCTGCTTCGATCATCCCTGAAACCCTAGATTTTCCTTCACAGAAGACAAATGGCTT 293
Query 353 AGGAGGAGCAATTGGATATGGAAATACAGTAGAGATCAACTTCTGCGTCTCCTGTTCTTA 412
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 294 ---AGGAGCAATTGGATATGGAAGTACAGTAGAGATCAACTTCTGCGTCTCCTGTTCTTA 350
Query 413 CAAGGGAACTGCAGTCACCATGAAGAAGATGTTAGAGACGGCTTTTCCCGGTTTAGATGT 472
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 CAAGGGAACTGCAGTCACCATGAAGAAGATGTTAGAGACAGCTTTTCCCGGTTTAGATGT 410
Query 473 GATTCTCGCAAATTACCCACCACCAGCACCAAAACGCCTTCTAGCTAAGGTTGTGCCGGT 532
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 411 GATTCTCGCAAATTACCCACCTCCAGCACCAAAACGCCTTCTAGCTAAGGTTGTGCCTGT 470
Query 533 TGTTCAGATGGGAGTTATTGGTATGATAGTTGCAGGTGATCGTATCCTTCCCATGATTGG 592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCTCAGATGGGAGTTATTGGTATGATAGTTGCAGGTGATCGTATCCTTCCCATGATTGG 530
Query 593 AATTACGAACCCACCTGCTTGGTTCCACTCCTTGAGGGCCAACAGATTTGGATCCATGGC 652
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AATAACGAACCCACCTGCTTGGTTCCACTCCTTGAGGGCCAACAGATTTGGATCCATGGC 590
Query 653 TTCCACTTGGCTTATCGGAAACTTTCTGCAGTCTTACCTTCAAAGCTCAGGCGCCTTTGA 712
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 591 TTCCACTTGGCTTATCGGAAACTTTCTGCAGTCTTACCTGCAAAGCTCAGGCGCCTTTGA 650
Query 713 AGTTCACTGCAACGGCGAACCGGTGTTCTCTAAATTGAAAGAAGGTAGATTCCCAGGAGA 772
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGTTTACTGCAATGGCGAACTGGTGTTCTCTAAATTGAAAGAAGGTAGATTCCCAGGAGA 710
Query 773 GATCGAGCTGAGAGATCTCATCAGTAAAACTCTAACACGACCGAGCATACTCACAGGCAG 832
|||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||
Sbjct 711 GATCGAGCTGAGAGATCTCATCAGCAAAACTGTAACAAGACCGAGCATACTCGCAGGTAG 770
Query 833 CAGCTACTGAAGTAGTAGTATCAGAAGATAGAAACGCTGGAACCTTTCCGTGAAGTTCTC 892
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 771 CAGCTACGGAAGTAGTAGTATCAGAAGATAGAAAAGCTGGAACCTTTCCGTGAAGTTCCC 830
Query 893 ACAAGTATTTTTAATACGAGATGGTGGTACAATCTCATGTGCCAAAAGTGT 943
|||||||||| || | ||||||||| ||||||||||||||||||||||||
Sbjct 831 -CAAGTATTTT-AACAAGAGATGGTGTTACAATCTCATGTGCCAAAAGTGT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5