BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58650.1
Length=439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950583 jgi|Araly1|950583|scaffold_802470.1 342 1e-93
> Ahg950583 jgi|Araly1|950583|scaffold_802470.1
Length=268
Score = 342 bits (185), Expect = 1e-93
Identities = 243/270 (90%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 21 ATTATATCAGACAGAGAGATATGACTTTTGTAGTTCGTCTTCTTGTGTGTCTCTTATTGA 80
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATTACATCAGACAGATAGATATGAGTTTTGTAGTTCGTCTTCTTGTGTGTCTCTTATTGA 60
Query 81 CGCTTACAATTACATCTTCTCTAGCCCGCAACCCTGTTTCCGTTTCAGGTGGGTTTGAGA 140
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCTTACAATTACATC-T-T-TAGCCCGCAACCCTGTTTCCGTTTCAGGTGGGTTTGAGA 117
Query 141 ATTCTGGATTCCAAAG--G-AGTTTGTTGATGGTGAACGTTGAGGACTACGGTGACCCAT 197
|||| |||||| |||| | || ||||||||||||||||||||||| ||||||||||| |
Sbjct 118 ATTCCGGATTCGAAAGAAGGAGGTTGTTGATGGTGAACGTTGAGGATTACGGTGACCCGT 177
Query 198 CTGCAAATCCTAAGCACGACCCCGGCGTTCCTCCGTCAGCAACCGGCCAACGTGTCG-TC 256
|||||||||| || ||| | ||||| || ||||||||| | |||||||||||||||| |
Sbjct 178 CTGCAAATCCAAAACACAATCCCGGTGTACCTCCGTCAACTACCGGCCAACGTGTCGCT- 236
Query 257 GGCAGAGGCTGACGTAATGTTTTAGTTAAC 286
|| |||||||||| || |||||||||||||
Sbjct 237 GGAAGAGGCTGACCTAGTGTTTTAGTTAAC 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834569435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5