BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58660.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495988 jgi|Araly1|495988|fgenesh2_kg.8__1804__AT5G58660.1 1661 0.0
> Ahg495988 jgi|Araly1|495988|fgenesh2_kg.8__1804__AT5G58660.1
Length=1221
Score = 1661 bits (899), Expect = 0.0
Identities = 1128/1237 (91%), Gaps = 21/1237 (2%)
Strand=Plus/Plus
Query 41 AGATGAGCATCAGTGAGTCATATCCACCGGCTTTCCGGCGTGTAACCAACGACGAAAATC 100
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1 AGATGAGCATCAGTGAGTCATATCCACCGGCTTTCCGGCGTGTAATCAACGACGGAGATC 60
Query 101 CTCCAGCAACACCGGTTATTGTCCAGGGCAAGGATATCAATATCCCGGTTATCGATTTGG 160
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTCTAGCAACACCGGTTCTTGTCCAGGGCAAGGATATCAATATCCCGGTTATCGATATGG 120
Query 161 AACGTTTGGACAAGGAGATACTGAGAGAGGCATGCAAGGAGTGGGGAATATTCCGTCTAG 220
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACGTTTGGATAAGGAGATACTGAGAGAGGCATGCAAGGAGTGGGGAATATTCCGTCTAG 180
Query 221 AGAATCACGGAGTACCGTTGGCGTTAACGTCACGGCTTCAAGAAATCTCGGAGTCATTAC 280
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 181 AGAATCACGGAGTACCGTTGGCGTTAACGTCACGACTTCAAGAAATCTCGGAGTCGTTAC 240
Query 281 TGAGTCTTCCGTTTGAGAAAAAACGGGAATTGTTCGCTGCCGTTAAATCTCCGTTATCGT 340
|||||||||| |||||||| ||||| || |||||||| |||||||| |||||||||||||
Sbjct 241 TGAGTCTTCCTTTTGAGAACAAACGAGACTTGTTCGCCGCCGTTAACTCTCCGTTATCGT 300
Query 341 ATTTTTGGGGAACACCAGCTCTAAATCGTTCAGGAGATGCACTAAAGAGAGGAGCTCAAG 400
| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 301 ACTTTTGGGGAACGCCAGCTCTAAATCGTTCGGGAGATGCACTGAAGAGAGGAGCTCAAG 360
Query 401 CTTCGAACTTAACCATGCTCGAAGGTTTCAACGTTCctctctcgtctctctcgtcgctct 460
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTTCAAACGTAACCATGCTCGAAGGTTTCAACGTTCCTCTCTCGTCTCTCTCAA---T-- 415
Query 461 cgAAGCTTCCAACTTCTACTTGTTGTGATGATGATGCTCAAGAAGAGCCTAAACTTGAGT 520
| |||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 416 -G---CTTCCAACTTCTACTTCTTGTGATGATGATGCTCAAGA-G--CCTAAACTTGAGT 468
Query 521 CTTTCAGAGTGTTGATGGAGGAATATGGAAAGCACATAACTAGAATTGCTGTGTCATTGT 580
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 469 CTTTCAGAGTGTTGATGGAGGAATATGGAAGGCACATAACTAGAATTGGTGTGTCCTTGT 528
Query 581 TCGAAGCTATAGCACAAACACTGAACCTAGAACTATCCGGTAACCGGAGATCAGAATACT 640
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 529 TCGAAGCTATAGCACAAACACTAAACCTAGAACTATCGGGTAACCGGAGATCAGAATTCT 588
Query 641 TATCGGAATCGACAGGGCTAATAAGGGTTTACCGGTATCCACAAAGCTCCGAGGAAGCAG 700
||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||| ||
Sbjct 589 TATCGGAATCGACAGGGCTCATACGGGTTTACCGGTATCCACGAAGCTCCGACCAAGAAG 648
Query 701 CCAGAGAAGCTCTAGGAATGGAAGTTCACACAGACAGTTCGGTTATCTCAATATTAAGAG 760
| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 649 CTGGAGAAGCTTTAGGAATGGAAGTCCACACAGACAGTTCTGTTATCTCAATATTAAAAG 708
Query 761 AAGATGAAAGTGGTGGGCTTGAGATCATGAAAGGTGAAGAATGGTTCTGTGTAAAGCCTG 820
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 709 AAGACGAAAGCGGTGGGCTTGAGATAATGAAAGGTGAAGAATGGTTCTGTGTAAAGCCTG 768
Query 821 TTGCTAATACTCTTATCGTCAATCTTGGAGATATGATGCAGGCCATAAGCGATGATGAGT 880
||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||
Sbjct 769 TTGCTAATACTCTCATTGTTAATCTTGGAGATATGATGCAGGTGATAAGCGATGATGAGT 828
Query 881 ACAAGAGTGTGACACATAGAGTGAAGAAGAGGAATAGGAAGACAGAGAGACACTCAGTGT 940
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 829 ACAAGAGTGTGACACATAGAGTGAAGAAGAAGAATAGGAAGACAGAGAGACACTCAGTGT 888
Query 941 GTTATTTTGTGTTTCCAAAGAGAGATTGCGTGATAAAGTCATCAAACTATAAGCTATTCA 1000
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 889 GTTATTTTGTGTTCCCAAAGAGAGATTGTGTGATAAAGTCATCAAACTATAAGCCATTCA 948
Query 1001 CTTACTCAGATTTTGAAGCTCAAGTTCAAGCTGATGTTCAGTCTCTTGGAACCAAGATTG 1060
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 949 CTTACTCAGAGTTTGAAGCTCAAGTTCAGGCTGATGTTCAGTCTCTTGGAACCAAGATTG 1008
Query 1061 GCCTTCCTAGATTCAACCCAAATTCTCCATTGTTTCTCTGACCGTGTCTGAAA-TTTAGT 1119
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct 1009 GCCTTCCTAGATTCAACCCAAATTCTCCATTGTTTCTCTGATCGTCTCTAAAAATTTAGT 1068
Query 1120 ATCTATTTGGTTTACCAAACTCTGGATACTTAAGTTAGTCCATCAATAAGACT-CAAACA 1178
||||||| |||||| ||||||||||||||| |||| || | | || ||| | || |
Sbjct 1069 ATCTATT-GGTTTAACAAACTCTGGATACTAAAGTCAG-CAAA-AA-AAGGCCGCATATT 1124
Query 1179 A-AGAA-AGCTGTGTTTTTGACTCTGAAATAATTTTGGGCTGGCCCTGATCATCGTAGAG 1236
| | | |||| | || ||| |||||||||||| |||||||||| || ||||||
Sbjct 1125 TTATTTTATTTTTGTTGTCGAGTCTCAAATAATTTTGGACTGGCCCTGAAAATTGTAGAG 1184
Query 1237 AACTTGACAATAAC-ATTGTTTGTTGAACATTAAAAA 1272
||||||| ||||| ||||||||||||| ||||||||
Sbjct 1185 AACTTGATAATAAATATTGTTTGTTGAATATTAAAAA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5