BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58670.1
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1 2671 0.0
Ahg897308 jgi|Araly1|897308|Al_scaffold_0005_1274 438 6e-122
> Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1
Length=1737
Score = 2671 bits (1446), Expect = 0.0
Identities = 1644/1739 (95%), Gaps = 16/1739 (1%)
Strand=Plus/Plus
Query 11 TTTTTCTCTCTCGCTTAACTTT--C-ACAA-Ga-aa-aaaaaaaGATGAAAGAATCATTC 64
||||||||||| |||||||||| | |||| | || ||||||||||||| |||||||||
Sbjct 1 TTTTTCTCTCTGGCTTAACTTTCACAACAACAACAACAAAAAAAGATGAAGGAATCATTC 60
Query 65 AAAGTGTGTTTCTGTTGTGTAAGAAACTTCAAGGTGAAATCAAGTGAGCCACCTGAAGAA 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTGTGTTTCTGTTGTGTAAGAAGCTTCAAGGTGAAATCAAGTGAGCCACCTGAAGAA 120
Query 125 ATCAAGAACCTTTTCCATGATTACTCTCAAGACGACAGGATGTCTGCTGATGAGATGCTC 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATCAAGAACCTTTTCCATGATTACTCTCAAGACGACAGGATGTCTGCTGACGAGATGCTC 180
Query 185 AGATTCGTGATCCAAGTTCAAGGAGAAACACACGCTGATATCAACTACGTGAAGGATATC 244
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 181 AGATTTGTGATCCAAGTTCAAGGAGAAACACACGCTGATATAAACTACGTCAAGGATATC 240
Query 245 TTCCACAGACTTAAACATCACGGCGTTTTTCATCCTCGTGGAATTCATCTTGAAGGATTC 304
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 241 TTCCACAGACTTAAACATCACGGCGTTTTCCATCCTCGTGGACTTCATCTTGAAGGATTC 300
Query 305 TACCGTTATCTTCTTAGTGATTTCAACTCTCCATTGCCTCTGACCCGCGAGGTTTGGCAA 364
||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 301 TACCGTTATCTCCTTAGTGATTTCAACTCTCCTTTGCCTGTGACCCGCGAGGTTTGGCAA 360
Query 365 GATATGAATCAGCCATTATCGCATTACTTCTTGTACACGGGACATAACTCTTACTTGACT 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATATGAATCAGCCTTTATCGCATTACTTCTTGTACACGGGACATAACTCTTACTTGACT 420
Query 425 GGGAATCAGTTGAACAGTAATAGCAGCATCGAACCGATTGTGAAAGCTCTGAGAA-ATGG 483
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 421 GGGAATCAGTTGAACAGTAAAAGCAGCATCGAACCGATTGTGAAAGCTCTGAGAAGA-GG 479
Query 484 AGTTCGTGTCATTGAGCTTGATTTATGGCCTAACTCTTCAGGAAAAGAAGCTGAAGTTCG 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTCGTGTGATTGAGCTTGATTTATGGCCTAACTCTTCAGGAAAAGAAGCTGAAGTTCG 539
Query 544 TCATGGAGGGACGTTAACGAGTCGTGAAGATCTGCAGAAATGTCTTAACGTGGTTAAGGA 603
||| || ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 540 TCACGGCGGGACATTAACGAGTTGTGAAGATCTGCAGAAATGTCTTAACGCGGTTAAGGA 599
Query 604 GAACGCGTTTCAGGTGTCTGCTTATCCTGTTGTGCTTACTTTAGAAGACCATTTAACTCC 663
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACGCTTTTCAGGTGTCTGCTTATCCTGTTGTGCTTACTTTAGAAGACCATTTAACTCC 659
Query 664 AATTCTTCAGAAGAAAGTCGCTAAGATGGTGAGTAAGACGTTTGGGGGATCATTGTTTCA 723
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 AAATCTTCAGAAGAAAGTCGCTAAGATGGTGAGTAAGACGTTTGGAGGATCATTGTTTCA 719
Query 724 ATGTACGGACGAA-ACTACAGAGTGTTTTCCTTCACCAGAATCACTCAAGAATAAGATCT 782
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 ATGTACGGACGAATA-TACAGAGTGTTTTCCTTCACCAGAATCACTCAAGAATAAGATTT 778
Query 783 TGATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTCAAAAGGTTCAACAA 842
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 779 TGATCTCTACAAAGCCACCAAAAGAGTATCTTCAGACCCAAGTCTCTCAAGGTTCAACAA 838
Query 843 CGGATGAATCCACTAGAGCTaaaaaaaTTTCGGATGCAGAAGAACAAGTTCAAGAAGAAG 902
|||||||||||| || ||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 839 CGGATGAATCCATTAAAGCTAAAAAAATTGCAGATGCAGAAGAACAGGTTCAAGAAGAAG 898
Query 903 ATGAGGAGAGTGTAGCGATTGAATACAGAGACTTAATCTCGATTCACGCTGGGAACCGCA 962
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 899 ATGAGGAGAGTGTAGCGATCGAATACAGAGACTTAATCTCGATTCACGCTGGAAACCGCA 958
Query 963 AAGGAGGGTTGAAGAATTGCTTGAATGGAGATCCTAACCGAGTCATACGGTTAAGCATGA 1022
||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 959 AAGGAGGATTGAAGAACTGCTTGAATGGAGATCCTAATCGAGTCATACGTTTAAGCATGA 1018
Query 1023 GTGAGCAGTGGCTTGAGACTCTGGCAAAAACCCGTGGACCCGATTTAGTAAAGTTCACGC 1082
|||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||||
Sbjct 1019 GTGAGCAGTGGCTTGAAACTTTGGCTAAAACCCGTGGATCTGATTTAGTAAAGTTCACGC 1078
Query 1083 AGCGGAATCTTTTGAGGATATTTCCCAAGACTACACGGTTTGACTCATCTAACTATGATC 1142
||||||||||| | ||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1079 AGCGGAATCTTCTCAGGATATTTCCCAAGACAACACGGTTCGACTCGTCTAACTATGATC 1138
Query 1143 CTCTCGTTGGGTGGATTCATGGGGCTCAAATGGTTGCCTTCAATATGCAAAGCCATGGGA 1202
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1139 CTCTCGTTGGATGGATTCATGGTGCTCAAATGGTTGCCTTCAATATGCAAAGTCATGGGA 1198
Query 1203 GGTATCTGTGGATGATGCAAGGAATGTTTAAAGCCAATGGTGGATGTGGCTATGTGAAAA 1262
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGTATTTATGGATGATGCAAGGATTGTTTAAAGCCAATGGTGGATGTGGCTATGTGAAAA 1258
Query 1263 AGCCTGATGTTTTGCTCTCCAATGGTCCTGAAGGTGAAATCTTTGACCCTTGTAGTCAAA 1322
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1259 AGCCTGATGTTTTGCTTTCCAATGGTCCTGGAGGTGAAATCTTTGACCCATGTAGTCAAA 1318
Query 1323 ACCTCCCGATCAAGACAACTCTTAAGGTGAAGATCTACACTGGAGAAGGATGGAATATGG 1382
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 ACCTCCCGATCAAGACTACTCTTAAGGTGAAGATCTACACTGGAGAAGGTTGGAATATGG 1378
Query 1383 ACTTTCCTTTAGATCACTTTGACCGATACTCTCCTCCTGATTTCTACGCAAAGG------ 1436
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1379 ATTTTCCTTTAGATCACTTTGATCGATACTCTCCTCCTGATTTCTATGCAAAGGCAAGAG 1438
Query 1437 TCGGAATCGCAGGGGTTCCATTGGACACAGCAAGTTACAGAACAGAAATAGATAAAGACG 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1439 TCGGAATCGCAGGGGTTCCATTGGACACAGCAAGTTACAGAACAGAAATAGATACAGACG 1498
Query 1497 AATGGTTTCCAATTTGGGACAAGGAGTTTGAGTTCCCATTACGTGTTCCTGAGTTATCTC 1556
|||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 1499 AATGGTTTCCGATTTGGGACAAGGAGTTCGAGTTCCCATTGCGTGTTCCTGAGTTAGCTA 1558
Query 1557 TTCTGTGTATCACAGTCAAAGATTACGACAGTAACACTCAGAACGATTTCGCTGGCCAGA 1616
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTCTGTGTATCACAGTCAAAGACTACGACAGTAACACTCAGAACGATTTCGCTGGCCAGA 1618
Query 1617 CATGTTTTCCGTTGTCGGAGGTAAGGCCAGGTATTCGTGCCGTTCGGCTCCACGATCGTG 1676
||||| ||||| |||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct 1619 CATGTCTTCCGCTGTCGGAGGTCAGGCCGGGTATTCGTGCCGTCCGGCTCCATGATCGTG 1678
Query 1677 CCGGAGAGGTCTACAAGCACGTGAGACTGCTCATGCGGTTTGTCTTGGAGCCTCGTTAG 1735
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CCGGGGAGGTCTACAAGCATGTGAGACTGCTCATGCGGTTTGTCTTGGAGCCTCGTTAG 1737
> Ahg897308 jgi|Araly1|897308|Al_scaffold_0005_1274
Length=516
Score = 438 bits (237), Expect = 6e-122
Identities = 291/318 (92%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 875 GATGCAGAAGAACAAGTTCAAGAAGAAGATGAGGAGAGTGTAGCGATTGAATACAGAGAC 934
||||||||||||| ||||||||| |||||| |||||||| |||||| ||||||||||||
Sbjct 94 GATGCAGAAGAACTGGTTCAAGAAAAAGATGTGGAGAGTGCAGCGATCGAATACAGAGAC 153
Query 935 TTAATCTCGATTCACGCTGGGAACCGCAAAGGAGGGTTGAAGAATTGCTTGAATGGAGAT 994
||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct 154 TTAATCTCGATTCACGCTGGGAACCACAAAGGAGGATTGAAGAACTGCTTAAATGGAGAT 213
Query 995 CCTAACCGAGTCATACGGTTAAGCATGAGTGAGCAGTGGCTTGAGACTCTGGCAAAAACC 1054
|||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 214 CCTAACCGAGACATACGGTTAAGCATCAGTGAGCAGTGGCTTGAGACTTTGGCTAAAACT 273
Query 1055 CGTGGACCCGATTTAGTAAAGTTCACGCAGCGGAATCTTTTGAGGATATTTCCCAAGACT 1114
|||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 274 CGTGGACCTGATTTAGTAAAGTTCACGCAGTGGAATCTTTTGAGGATATATCCCAAGACA 333
Query 1115 ACACGGTTTGACTCATCTAACTATGATCCTCTCGTTGGGTGGATTCATGGGGCTCAAATG 1174
|||||||| ||||| | ||||||||||||||||||||| | ||||||||| ||||||| |
Sbjct 334 ACACGGTTCGACTCGTATAACTATGATCCTCTCGTTGGATCGATTCATGGTGCTCAAACG 393
Query 1175 GTTGCCTTCAATATGCAA 1192
|||| |||||||||||||
Sbjct 394 GTTGTCTTCAATATGCAA 411
Score = 93.5 bits (50), Expect = 5e-18
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 770 AAGAATAAGATCTTGATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC 828
|||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAGATTACGATCTTAATCTCAACAAAGCCACCAAAAGAGTATCTTCAGACCCAAATCTC 71
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73704624075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5