BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58680.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950586 jgi|Araly1|950586|scaffold_802473.1 1568 0.0
> Ahg950586 jgi|Araly1|950586|scaffold_802473.1
Length=1114
Score = 1568 bits (849), Expect = 0.0
Identities = 1040/1128 (92%), Gaps = 29/1128 (3%)
Strand=Plus/Plus
Query 13 ATCTCAT-AGACTCATAGCAATGGCGAATCACAACAG--T-TTCACTTACATGGACCATA 68
||||||| | | |||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 1 ATCTCATCATAGTCATAGCAATGGAGAATCACAAGAGTTTCTTCACTTACATGGACCATA 60
Query 69 GCTTCAGCGATAT-AAGTCTCAACTTTGATTCCTCTGCTTTCAGCGATTGTAACAGTGAC 127
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AATTCAGCGAT-TCAAGTCTCAACTTTGATTCCTCTGCTTTCAGCGATTGTAACAGCGAC 119
Query 128 ATATCCTGCGAGTTTCCAACAACTACCTCCGAGAGCCGTCAACGAAAACTCTTCCTCTCT 187
| |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 AGATCCGGCGAATTTCCAACAACTTCCTCCGAGAGCCGTCAACGAAAACTCTTCCTCTCT 179
Query 188 TGCGCCGTTGATAATTCCGATGACGTGA-TCAGAAATCTCATAACGCATCTTGAGTCA-- 244
|||||||||||||||||||| || ||| || || ||||||||| ||||||||||||
Sbjct 180 TGCGCCGTTGATAATTCCGACGATTTGATTC-GATGTCTCATAACACATCTTGAGTCATC 238
Query 245 -TCTTCTTCGATCGAGGAACAGAAGCAAGCTGCTATGGAGATTAGACTCTTATCAAAGAA 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCTTCTTCGATCGAGGAACAGAAGCAAGCTGCTATGGAGATTAGACTCTTATCAAAGAA 298
Query 304 CAAACCAGAG-AATCGTATCAAACTCGCTAAAGCCGGTGCTATTAAACCGTTGGTTTCTT 362
|||||||||| || |||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 299 CAAACCAGAGGAA-CGTAACAAAATCGCTAAAGCCGGTGCGATTAAACCGTTGGTTTCTT 357
Query 363 TAATCTCGTCTTCGGATCTTCAGCTTCAAGAGTATGGAGTCACTGCGGTGTTGAATCTAT 422
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 358 TGATCTCGTCTTCCGATCTTCAGCTTCAGGAGTATGGAGTCACTGCGGTTTTGAATCTAT 417
Query 423 CTCTCTGCGATGAGAACAAAGAGATGATTGTTTCTTCCGGTGCGGTTAAACCGCTCGTTA 482
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 418 CTATCTGCGATGAGAACAAAGAGATGATTATTTCTTCCGGTGCGATTAAACCGCTCGTTA 477
Query 483 ATGCGTTGAGATTAGGAACACCGACGACGAAAGAGAACGCTGCTTGTGCTCTGCTCCGGT 542
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 ATGCGTTGCGGTTAGGAACACCGACGACGAAAGAGAACGCTGCTTGTGCTCTGCTTCGGT 537
Query 543 TATCTCAAGTGGAGGAAAACAAAATCACGATTGGGAGATCAGGAGCGATTCCTTTACTAG 602
|||| ||| ||||||| ||||||||| |||| || ||||| |||||||||||||||||||
Sbjct 538 TATCGCAATTGGAGGATAACAAAATCGCGATCGGAAGATCTGGAGCGATTCCTTTACTAG 597
Query 603 TGAACCTTCTAGAAAATGGCGGATTCAGAGCGAAGAAAGACGCGTCGACGGCTTTATACT 662
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 598 TGAACCTTCTAGAAAATGGCGGATTCAGAGCAAAGAAAGACGCGTCGACGGCGTTGTACT 657
Query 663 CGTTGTGTTCGACGAACGAGAACAAAACCAGAGCTGTTGAATCTGGGATTATGAAGCCGT 722
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 658 CGTTGTGTTCGACGAACGAGAACAAAATCAGAGCTGTGGAATCTGGGATTATGAAGCCGT 717
Query 723 TAGTGGAGTTAATGATTGATTTTGAATCGGATATGGTTGATAAATCAGCGTTTGTTATGA 782
| |||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 718 TGGTGGAGTTGATGGCGGATTTTGAATCGGAGATGGTTGATAAATCGGCGTTTGTTATGA 777
Query 783 ATCTGTTAATGTCGGCGCCGGAATCGAAGCCGGCGGTTGTGGAAGAAGGAGGAGTTCCGG 842
|| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 778 ATTTGTTAATGTCGGTGCCGGAATCGAAGCCGGCGGTTGTTGAGGAAGGAGGAGTTCCGG 837
Query 843 TG-TTGGTTGAGATTGTTGAAGCGGGAACACAGAGACAGAAGGAGATAAGTGTGTCGATA 901
|| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 TGCTTG-TGGAGATTGTTGAAGCGGGAACACAGAGACAGAAGGAGATGAGTGTGTCGATA 896
Query 902 TTGTTGCAGCTTTGTGAGGAGAGTGTTGTGTATCGAACCATGGTGGCTCGTGAAGGAGCG 961
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTGTTGCAGCTTTGTGAAGAGAGTGTTGTGTATCGAACCATGGTGGCTCGTGAAGGAGCG 956
Query 962 GTTCCTCCGCTCGTGGCTTTATCGCAG-G--GTAGTGCGAGTCGTGGTGCTAAGGTAAAG 1018
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 957 GTTCCTCCGCTCGTGGCTTTATCGCAGAGTAGTAGTGCGAGTCGTGGTGCTAAGGTAAAG 1016
Query 1019 GCTGAGGCGTTGATAGAGCTTCTTAGGCAACCCAGacaacaacaacaacaacaacaacaC 1078
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1017 GCTGAGGCGTTGATAGAGCTTCTTAGGCAACCAAGACAACAACAACAACA-C-------- 1067
Query 1079 TTTGAATCTAACGACAACGAGAGATAACACTTT-AGTTTGGGCTTTTT 1125
|||||||| | |||||||||||||||||||||| | ||||||||||||
Sbjct 1068 TTTGAATCCACCGACAACGAGAGATAACACTTTGA-TTTGGGCTTTTT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5