BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58690.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917601 jgi|Araly1|917601|Al_scaffold_0008_2352 1703 0.0
> Ahg917601 jgi|Araly1|917601|Al_scaffold_0008_2352
Length=1647
Score = 1703 bits (922), Expect = 0.0
Identities = 1055/1117 (94%), Gaps = 17/1117 (2%)
Strand=Plus/Plus
Query 735 CCAGATCTTCAAGCCAAAGCAGCTGAGATGATGAAAGAGATATTCATGGATATGGTGTAT 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCAGATCTTCAAGCCAAAGCAGCTGAGATGATGAAAGAGATATTCATGGATATGGTGTAT 594
Query 795 TTTCCAGAGGCTGGTGGTTTAAAAGAGTTTCCTTCACCAGAAGATCTCAAGTACAAAATT 854
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 TTTCCCGAGGCTGGCGGTTTAAAAGAGTTCCCTTCACCAGAAGATCTCAAGTACAAAATT 654
Query 855 GTAATATCTACAAAGCCTCCTAAAGGTAGCTTAAGAAA-GGACAAGGATTCTGAGTCAGA 913
|||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||
Sbjct 655 GTAATATCTACAAAGCCTCCCAAAGGTAATTTAA-AAAGGGACAAGGATTCTGAGTCAGA 713
Query 914 TGCATCAGGAAAGGCGTCATCAGA-TGTTTC--A-G--C----AGACGATGAGAAGACTG 963
|| ||||||||||||||||||||| | |||| | | | |||||||| ||||||||
Sbjct 714 TGTATCAGGAAAGGCGTCATCAGACT-TTTCAGATGACCAAGTAGACGATGGGAAGACTG 772
Query 964 AGGAAGAAACAAGTGAGGCCAAAAATGAAGAGGATGGATTTGATCAAGAATCCAGCAACT 1023
|||||||||| || ||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 773 AGGAAGAAACCAGCGAGGCCAAAAATGAAAAGGAAGGATTAGATCAAGAATCCAGCAACT 832
Query 1024 TGGATTTCCTCACCTATAGTCGCCTAATAACGATTCCTTCTGGAAATGCTAAAAATGGAT 1083
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 833 TGGATTTCCTCACCTATAGCCGCCTGATAACGATTCCTTCTGGAAATGCTAAAAATGGAT 892
Query 1084 TAAAGGAAGCACTAACAATCGATAATGGTGGAGTTAGACGGCTGAGTTTGAGGGAGCAGA 1143
||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 893 TAAAGGAGGCACTTACGATCGATAATGGTGGAATTAGACGGCTGAGTTTGAGGGAGCAGA 952
Query 1144 AGTTCAAGAAAGCCACTGAAATGTATGGAACCGAAGTCATAAAATTCACACAGAAGAATC 1203
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 953 AGTTCAAGAAAGCCACTGAAATGTATGGAACCGAAGTCATGAAATTCACACAGAAGAATC 1012
Query 1204 TGTTGAGAATATATCCCAAGGCTACCCGAGTAAATTCCTCCAACTATAGGCCATACAACG 1263
||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 1013 TGTTGAGGATATATCCCAAGGCCACACGAGTAAATTCCTCCAACTATAGGCCCTACAACG 1072
Query 1264 GTTGGATGTACGGAGCTCAAATGGTCGCTTTCAACATGCAGGGCTATGGAAGAGCTCTTT 1323
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1073 GTTGGATGTACGGAGCTCAAATGGTTGCTTTCAACATGCAGGGCTATGGAAGAGCACTCT 1132
Query 1324 GGATGATGCATGGTATGTTTAG-GGGAAATGGTGGATGCGGGTACGTGAAAAAACCGGAC 1382
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 1133 GGATGATGCATGGTATGTTTAGAGGG-AATGGTGGATGCGGGTACGTGAAAAAACCAGAC 1191
Query 1383 TTTATGATGAACAATAATCTCAGTGGAGAAGTGTTCAACCCGAAAGCGAAGTTACCCATA 1442
||||| ||||| ||| |||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 1192 TTTATAATGAAAAATGGTCTCGGTGGAGAAGTGTTTGACCCAAAAGCGAAATTACCCATA 1251
Query 1443 AAGAAAACTCTAAAAGTGAAAGTATACATGGGCAAAGGATGGGACTCTGGTTTCCAGCGA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AAGAAAACTCTAAAAGTGAAAGTATACATGGGCAAAGGATGGGACTCTGGTTTCCAGCGA 1311
Query 1503 ACATGTTTCAACACTTGGTCCTCTCCTAACTTCTACACAAGGGTGGGGATAACAGGAGTA 1562
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ACATGTTTCAACACTTGGTCTTCTCCTAACTTCTACACAAGGGTGGGGATAACAGGAGTA 1371
Query 1563 AGAGGTGATAAGGTAATGAAGAAAACAAAGAAAGAACAAAAGACATGGGAGCCATTCTGG 1622
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1372 AGAGCTGATAAGGTAATGAAGAAAACAAAGAAAGAAGAAAAGACATGGGAGCCATTCTGG 1431
Query 1623 AACGAGGAGTTTGAGTTTCAGCTAACAGTACCGGAGCTGGCGT-TGCTAAGAATAGAAGT 1681
|||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1432 GACGAGGAGTTTGAGTTTCAGCTAACAGTACCGGAGCTGGC-TCTGCTCAGAATAGAAGT 1490
Query 1682 TCACGACTACAACATGCCAGAGAAGGACGATTTCTCGGGTCAGACATGTTTGCCTGTGTC 1741
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TCACGACTACAACATGCCGGAGAAGGACGATTTCTCGGGTCAGACATGTTTGCCTGTGTC 1550
Query 1742 AGAGCTGAGACAAGGCATACGTTCTGTTCCTTTGTATGATCGCAAAGGCGAGAGACTAGT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AGAGCTGAGACAAGGCATACGTTCTGTTCCTTTGTATGATCGCAAAGGCGAGAGACTAGT 1610
Query 1802 TTCAGTTACACTTCTCATGCGGTTTCACTTTCTTTAA 1838
||||| ||||||||||||||||||||||||| |||||
Sbjct 1611 TTCAGCTACACTTCTCATGCGGTTTCACTTTGTTTAA 1647
Score = 817 bits (442), Expect = 0.0
Identities = 482/502 (96%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 102 ATGAAGAGAGATATGGGGAGTTACAAAATGGGTTTGTGTTGCAGTGACAAGCTCAGGATG 161
||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 1 ATGAAGAGAGAGATGGGGAGCTACAAAATGGGTTTGTGTTTCAGTGACAAGCTCGGGATG 60
Query 162 AACAGAGGAGCTCCACCTCAGGATGTGGTGACGGCGTTTGTAGAGTATACCGAGGGCAGG 221
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 AACAGAGGAGCTCCACCTCCGGATGTAGTGACTGCGTTTGTAGAGTATACCGAGGGCAGG 120
Query 222 AGCCACATGACGGCAGAGCAGCTATGTCGGTTCTTGGTTGAGGTGCAGGACGAGACTGAA 281
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AACCACATGACGGCAGAGCAGCTATGTCGGTTCTTGGTTGAGGCGCAGGACGAGACTGAG 180
Query 282 GTGTTGGTTTCAGATGCAGAGAAGATCATAGAAAGAATCACATGTGAAAGACATCATATC 341
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTGTTGGTTTCAGATGCAGAGAAGATCATTGAAAGAATCACATGTGAAAGACATCATATC 240
Query 342 ACTAAGTTCTTGAGGCATACGCTGAACCTCGATGATTTCTTCAGTTTCTTGTTCTCAGAT 401
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACTAAGTTCTTGAGGCATACGCTGAACCTTGATGATTTCTTCAGTTTCTTGTTCTCAGAT 300
Query 402 GATCTGAATCATCCAATTGATAGTAAGGTGCATCAAGACATGGCCTCTCCCTTGTCGCAC 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GATCTGAATCATCCAATTGATAGTAAGGTGCATCAAGACATGGCCTCTCCCTTGTCCCAC 360
Query 462 TATTTCATTTACACCAGCCATAATTCGTATCTGACTGGAAATCAGATCAACAGCGAATGC 521
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TATTTCATTTACACGAGCCATAATTCGTATCTGACTGGAAATCAGATCAACAGTGAATGC 420
Query 522 AGCGACGTACCTCTCATAAAGGCATTAAAGAGAGGTGTTCGAGCTCTTGAACTTGACATG 581
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 421 AGCGATGTACCTCTTATAAAGGCATTAAAGAGACGTGTTCGAGCTCTTGAACTTGACCTG 480
Query 582 TGGCCTAACTCTACTAAGGACG 603
|||||||| |||||||||||||
Sbjct 481 TGGCCTAAATCTACTAAGGACG 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5