BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58700.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495993 jgi|Araly1|495993|fgenesh2_kg.8__1809__AT5G58700.1 3125 0.0
> Ahg495993 jgi|Araly1|495993|fgenesh2_kg.8__1809__AT5G58700.1
Length=1975
Score = 3125 bits (1692), Expect = 0.0
Identities = 1884/1976 (95%), Gaps = 15/1976 (1%)
Strand=Plus/Plus
Query 16 AACAAGACGACGATACATACAC----A-A-AC--ATGGAAGGaaaaaaaGAGATGGGTAG 67
|||||||||||||||||||||| | | || ||||| ||||||| ||||||||||||
Sbjct 1 AACAAGACGACGATACATACACATATACATACATATGGAGGGAAAAAGAGAGATGGGTAG 60
Query 68 TTACAAATTCTGTCTGATCTTCACAAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 127
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TTACAAATTCTGTCTGATCTTCACGAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGA 120
Query 128 AGACGTCAGAGATCTTTTCGAGAAATACACCGAAGGCGATGCTCATATGTCGCCGGAGCA 187
||||||||||| |||||||||||||| |||| || || ||||| ||||||||||||||
Sbjct 121 TGACGTCAGAGAGATTTTCGAGAAATACGCCGACGGTGAAGCTCACATGTCGCCGGAGCA 180
Query 188 GCTACAGAAGCTCATGACGGAGGAAGGAGGA-GA--AGGAGAAACAAGTCTAGAGGAAGC 244
|||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 181 GCTACAGAAGCTCATGGCGGAGGAAGGAGGAGGAGGAGGAGAAACAAGTCTGGAGGAAGC 240
Query 245 AGAGAGAATCGTTGACGAGGTTCTTCGCCGGAAACATCACATTGCAAAGTTCACCAGACG 304
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 241 GGAGAGAATCGTTGACGAGGTGCTTCGCCGGAGACATCACATTGCAAAGTTCACCAGAAG 300
Query 305 AAACCTTACTCTTGATGATTTCAATTATTACCTCTTTTCTACTGATCTTAATCCTCCTAT 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 AAACCTTACTCTTGATGATTTCAATTATTACCTGTTTTCTACTGATCTTAATCCTCCAAT 360
Query 365 CGCCGATCAGGTCCATCAAAACATGGATGCTCCATTGTCACATTACTTTATATTCACAGG 424
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 361 CGGCGATCAGGTCCATCAAAACATGGATGCTCCACTGTCACATTACTTTATATACACAGG 420
Query 425 CCACAATTCCTATTTAACTGGAAATCAGCTAAGTAGCAACTGCAGTGAACTTCCTATTGC 484
||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 CCATAATTCGTACTTAACTGGAAATCAGCTCAGTAGCAACTGCAGTGAACTTCCTATTGC 480
Query 485 AGATGCATTGAGACGAGGCGTGAGAGTTGTTGAGTTGGATCTTTGGCCACGTGGTACCGA 544
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 481 AGATGCATTGAGACGAGGCGTGAGAGTGGTTGAGTTGGATCTTTGGCCTCGTGGTACCGA 540
Query 545 TGATGTCTGCGTTAAACATGGAAGGACATTGACAAAGGAAGTGAAGTTGGGAAAATGTTT 604
||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 541 TGATGTCTGTGTTAAACATGGAAGGACCTTGACAAAAGAAGTGAAATTGGGGAAATGTTT 600
Query 605 GGAATCTATTAAAGCTAATGCCTTTGCTATTTCAAAGTATCCTGTTATTATTACTCTTGA 664
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GGAATCCATTAAAGCTAATGCCTTTGCTACTTCAAAGTATCCTGTTATTATTACTCTTGA 660
Query 665 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCTAAGATGATAACTCAGACATTTGG 724
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCCAAGATGATAACTCAGACATTTGG 720
Query 725 AGATATGTTGTATTACCATGATTCTCAAGGTTGTCAAGAATTTCCTTCACCGGAAGAGTT 784
||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 721 AGATATGTTGTATTACCATGATTCTGAAAGTTGTCAAGAATTTCCTTCACCTGAAGAGTT 780
Query 785 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATAC 844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 781 GAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATGC 840
Query 845 TAAGGAGAAAGATAATGGAGAAAAAGGTAAGGATTCGGATGAGGATGTATGGGGCAAAGA 904
||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 841 GAAGGAGAAAGATAGTGGAGAGAAAGGGAAGGATTCGGATGAGGATGTATGGGGAAAAGA 900
Query 905 GCCAGAAGACCTTATTTCTACGCAATCTGATCTTGACAAGGTGACAAGCAGTGTAAATGA 964
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 901 GCCAGAAGACCTTATTTCTACGCAGTCTGATCTTGAGAAGGTCACAAGCAGTGTAAATGA 960
Query 965 TCTCAATCAAGATGATGAAGAAAGGGGGTCTTGTGAGTCTGATACGTCATGCCAATTACA 1024
||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 961 TCTCAGTCAAGATGAGGAAGAAAGAGGGTCTTGTGAGTCTGACACGTCATGCCAATTACA 1020
Query 1025 AGCACCAGAATACAAGCGTCTTATCGCTATCCATGCCGGGAAGCCAAAAGGCGGTTTACG 1084
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1021 AGCACCAGAATACAAGCGTCTTATTGCTATCCATGCTGGGAAGCCAAAAGGCGGTTTACG 1080
Query 1085 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACT 1140
Query 1145 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCT 1200
Query 1205 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTG 1260
Query 1265 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCATTGTGGCT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1261 GATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCTTTGTGGCT 1320
Query 1325 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCT 1380
Query 1385 TATGGATGCAAGTCCTAATGGACAAGATTTTTACCCCAAAGATAATTCGTCTCCAAAGAA 1444
|||||||||| || |||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1381 TATGGATGCAGGTTCTAATGGACAAGGTTTTTATCCCAAAGATAATTCGTGTCCAAAGAA 1440
Query 1445 AACTTTAAAGGTGAAAGTC-TGTATGGGAGATGGATGGCTCCTAGACTTCaaaaaaaCTC 1503
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AACTTTAAAGGTGAAAGTCCT-TATGGGAGATGGATGGCTCCTAGACTTCAAAAAAACTC 1499
Query 1504 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCTGGAGCACCTG 1563
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1500 ACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCCGGAGCACCTG 1559
Query 1564 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCTATTTGGAATA 1623
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 TTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCCATTTGGAATA 1619
Query 1624 AGGAGTTCACATTCCCTTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTTCATG 1683
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1620 AGGAGTTCATATTCCCGTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTCCATG 1679
Query 1684 AGCACGACGTGAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTTTCAGAGA 1743
|||| ||| | ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1680 AGCATGACATAAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTGTCCGAGA 1739
Query 1744 TAAGACAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1803
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TAAGGCAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCA 1799
Query 1804 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGACGCCATTTTTGGTGCGTGTATCCATC 1863
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1800 CACGGCTTCTTATGCGCTTCGAGTTTGTCTGAGATGCCATTTTTGGTGCGTGTATCCATC 1859
Query 1864 TAGATTTATATCTTCTTACTTTATTCGATATGCTGTGT-TTTATGTGTCTTATGCTTCTT 1922
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1860 TAGATTTATATCTTCTTACTTTATTCGGTATGTTGTGTGTTTATGTGTCTTATGCTTCTT 1919
Query 1923 CATTGATGAATAAAATTTGATCTTT-ACATGAGAAATATATAGATCTTCTGAAATT 1977
|||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1920 CATTGAGGAATAAAATTTGATCTTTTACATGATAAATATATAGATCTTCCGAAATT 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5