BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58710.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495994 jgi|Araly1|495994|fgenesh2_kg.8__1810__AT5G58710.1 1066 0.0
> Ahg495994 jgi|Araly1|495994|fgenesh2_kg.8__1810__AT5G58710.1
Length=710
Score = 1066 bits (577), Expect = 0.0
Identities = 670/715 (94%), Gaps = 6/715 (1%)
Strand=Plus/Plus
Query 20 aaaaaaaaaGGGACTGTGGAGAA-ACACTTTAGCACGGTGCGACAAGATGGCGAGCTCAG 78
||||||||||||||||| ||||| | || | ||||||||| |||||||||||||||
Sbjct 1 AAAAAAAAAGGGACTGTAGAGAAGAAAC---A--ACGGTGCGAGGAGATGGCGAGCTCAG 55
Query 79 TGACGCTGCTTCTATGGAGTCTTCTTCTTCTCGGTACACTAAGCGCTATTCAGGCCAAAA 138
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 56 TGACGCTGCTTCTATGGAGTCTTCTTCTTCTCGGAACCCTAAGCGCTATTCAGGCCAAAA 115
Query 139 AGTCTAAGGAAAACTTAAAGGAGATCACACACAAGGTTTATTTTGATGTTGAAATTGATG 198
||||||| |||||| | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 116 AGTCTAAAGAAAACGTGAAGGAGATCACACACAAGGTTTATTTCGATGTCGAAATTGATG 175
Query 199 GGAAAGCAGCTGGTCGTATTGTCATGGGTCTATTTGGCAAGACAGTCCCCAAAACTGTAG 258
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 176 GGAAAGCAGCCGGTCGTATTGTCATGGGTCTATTTGGCAAGACAGTCCCCAAAACTGTCG 235
Query 259 AGAATTTCCGAGCTTTATGCACTGGGGAGAAAGGAATAGGTAAGAATGGGAAGGCGCTCC 318
|||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 236 AGAATTTCCGAGCTCTATGCACAGGGGAGAAAGGGATAGGTAAGAAAGGGAAGGCTCTCC 295
Query 319 ATTACAAGGGGAGTTCATTTCATAGGATCATACCAAGCTTTATGCTCCAAGGAGGCGATT 378
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 296 ATTACAAGGGGAGTTCATTCCACAGGATCATACCAAGCTTTATGCTTCAAGGAGGCGATT 355
Query 379 TTACACATGGAAATGGAATGGGAGGAGAATCTATCTATGGTGAGAAGTTTGCTGATGAGA 438
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 TTACACATGGAAATGGAATGGGAGGAGAATCTATCTATGGTGAGACGTTTGCTGATGAGA 415
Query 439 ACTTCAAACTCAAGCATACTGGTCCAGGGTTCTTATCAATGGCAAATGCCGGTCAAGATA 498
||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
Sbjct 416 ACTTCAAACTCAAGCATACTGGTCCTGGGTTCCTATCAATGGCAAACGCCGGTCAAGACA 475
Query 499 CCAACGGATCACAGTTTTTCATCACAACTGTAACAACCAGCTGGTTGGATGGGCGACATG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 CCAACGGATCACAGTTTTTCATCACAACTGTAACAACCAGCTGGTTGGATGGGCGGCATG 535
Query 559 TGGTATTCGGGAAGGTAGTGACAGGAATGGATGTGGTGTACAAAGTCGAAGCTGAAGGAA 618
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 536 TGGTATTCGGGAAGGTAGTGACGGGAATGGACGTGGTGTACAAAATCGAAGCTGAAGGAA 595
Query 619 ATCAGAGTGGAACTCCTAAGAGTAAAGTGGTGATTGTAGACAGTGGTGAGCTTCCCCTGT 678
|||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||
Sbjct 596 ATCAGAGTGGAACTCCTAAGAGTAAAGTAGTGATCGTGGACAGTGGTGAACTTCCTCTGT 655
Query 679 AACTCAACAACTCTAGTTTTCTCCATCTGATCATCCATTGATGTGAGCTCTAGTG 733
|||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 656 AACTCAGCAACTCAAGTTTTCTCCAACTGATCCTCCATTGATGTGAGCTCTAGTG 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5