BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58720.1
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950590 jgi|Araly1|950590|scaffold_802477.1 2348 0.0
Ahg951661 jgi|Araly1|951661|scaffold_101000002.1 477 1e-133
> Ahg950590 jgi|Araly1|950590|scaffold_802477.1
Length=1570
Score = 2348 bits (1271), Expect = 0.0
Identities = 1392/1451 (96%), Gaps = 5/1451 (0%)
Strand=Plus/Plus
Query 147 TCTATAATTGTACGATAATGAAGCAGAAGAACCAGCATAAGAAGAAGAAGAAGCGATCCT 206
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 TCTATAATCGTGCGATAATGAAGCAGAAGGGCCAGCATAAGAAGAAGAAGAAGCGATCCT 63
Query 207 GCGCCGCGAAACCTTCCGGTGATGGAACGACGTCGGACGGGAACAAAAAAGATGTGGAGG 266
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 GCGCCGCGAAATCTTCCGGTGATGGAACGGCGTCGGACGGGAACAAAAAAGATGTGGAGG 123
Query 267 AAGAGAGGAAGGACGGTGAAGGAAAGAGGGAGATAGAAAACGTTGGAAAAAATTTTATCG 326
| |||||||| ||||||||||| | || |||| ||||||| |||| |||||| ||||||
Sbjct 124 AGGAGAGGAAAGACGGTGAAGGTACGAAGGAGTTAGAAAAAGTTGAAAAAAAAATTATCG 183
Query 327 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAGG 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAAG 243
Query 387 AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTATCGGATCTGGTGGAAAGCGGTG 446
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 244 AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTGTCGGATCTGGTGGAAAGCGGGG 303
Query 447 ATGATCCGTCGACGAGTTCGGTGGCGAGTGGTTCTTCGGGTCAGGAAACAGCGTCTACCT 506
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 304 ATGATCCGTCGACGAGTTCGGTGGCGAGTGGTTCTTCGGGTCAGGAGACCGCGTCTACCT 363
Query 507 CTGAGTATGGGGCAGGGTCAAGTTCTAGCTGTAGCGAAGATTTGACTAGAGATAGATGGT 566
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 364 CTGAGTATGGGGCTGGTTCAAGCTCTAGCTGTAGCGAAGATTTGACTAGAGATAGATGGT 423
Query 567 TTAAGGGAAGCAAGCAGAGTAGAGTTATTGCTGCTACAGGGATGGTTTCTTCTGTGATTG 626
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTAAGGGAAACAAGCAGAGTAGAGTTATTGCTGCTACAGGGATGGTTTCTTCTGTGATTG 483
Query 627 CGAAGGATTACTTGAAGCCAAACCCTGTGCGAAAAGAGTTTCCTATGATGGAACGGTCTA 686
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 484 CTAAGGATTACTTGAAGCCAAACCCTGTGCGAAAAGAGTTTCCTATGATGGAAAGGTCTA 543
Query 687 AAGAGCTCTGTGGGAACGGGAAAAAAGCTGCGGATAGAGAGAAAGCTGAACAG-TTCTTA 745
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 544 AAGAGTTCTGTGGGAACGGGAAAAAAGCTGCGGATAGAGAGAAAGCTGAACAGTTTCTGA 603
Query 746 AGTTCAATGCTTGGAGATGATTGCGAGCTTAGCATGGCTGTTGTTAGAGATGTTTTGTGT 805
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 A-TTCAATGCTTGGAGATGATTGCGATCTTAGCATGGCTGTTGTTAGAGATGTTTTGTGT 662
Query 806 CAATGTGGCTATGATGTCGACATGGCTTTGAATGTCTTGCTTGACATGTCTTCTTCATCA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CAATGTGGCTATGATGTCGACATGGCTTTGAATGTCTTGCTTGACATGTCTTCTTCATCA 722
Query 866 ACTGATGATTCATTGAGTGGTAAATGTTTCGGCATAGGAGTCAGCGATAGTCTGGCAGAG 925
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct 723 ACTGATGATTCATTGAGTGGTAAATGTTTCGGCATAGGCGCCAGCGGTAGTCTGGCAGAG 782
Query 926 TCATCTTTTGATACTGATACTTCTGATTGTGAACTTTTCTGGGGTGGAGACTATAGTCAA 985
||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||
Sbjct 783 ACATCTTTTGATACTGATACTTCTGAAAGTGAACTTTTCTGGGGTGTAGA-TA--GTCAA 839
Query 986 AGGGACTACGCAAAAGCTCTCATGAGTTCTCAAGATCCTTTTGCAACTACCCAAGGAATT 1045
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AGGGATTACGCAAAAGCTCTCATGAGTTCTGAAGATCCTTTTGCAACTACCCAAGGAATT 899
Query 1046 GATGAGCTTGGTCTTCCACAAAAAGTGTTGGAGTCTCTGTTCAACATTCGCCAGAATCCT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 GATGAGCTTGGTCTTCCACAAAAAGTGTTGGAGTCTCTGTTCAACATTCGCCAGAGTCCT 959
Query 1106 AAACATGAATCAAAGACAACGAGTTGGAGGAATGTGGCAAAGAAAATGCAGTCACTTGGC 1165
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAACATGAACCAAAGACAATGAGTTGGAGGAATGTGGCAAAGAAAATGCAGTCACTTGGC 1019
Query 1166 ATTGATGCTTCTTCATCTAGTGGGGAAGAGCCTCACCCTAATACGTTTGTGAAGGATGAC 1225
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1020 ATTGATGCTTCTTCATCTAGTGGGGATGAGCCTCAGCCTAATACGTTTGTGAAGGATGAC 1079
Query 1226 AGTTATCATGAACTTAGAAAAGGTGCAAATGACCAGTGGAATGTTACGAAGTCCTACTAT 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGTTATCATGAACTTAGAAAAGGTGCAAATGACCAGTGGAATGTTACGAAGTCCTACTAT 1139
Query 1286 CAAAAAGCTGCCGAAGCATATTCGAAAGGAGGGAGGGCTCATGCGGCTTACCTTTCTGAC 1345
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1140 CAAAAAGCTGCCGAAGCATATTCAAAAGGAGGGAGGGCTCATGCAGCTTACCTTTCTGAC 1199
Query 1346 AAGGGAAGAGTGGCATCTAAACAAGCTCAACGGGCTGATGAGAGGGCAAGCCAAGATATA 1405
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGGGGAGGGTGGCATCTAAATTAGCTCAACGGGCTGATGAGAGGGCAAGCCAAGATATA 1259
Query 1406 TTCGTTGCAAGAAACAAAGGTATAGAGAATGTGGTAACCATTGATCTGCATGGTCAGCAT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCGTTGCAAGAAACAAAGGTATAGAGAATGTGGTAACCATTGATCTGCATGGTCAGCAT 1319
Query 1466 GTTAAACCAGCAATGAAGCTACTGAAGCTACATCTCTTATTTGGATCATATGTTCCTTCC 1525
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 GTTAAACAAGCAATGAAGCTACTGAAGCTACATCTCTTATTTGGATCATATGTGCCTTCC 1379
Query 1526 ATTCAGACTCTACGAGTGATCACAGGATGTGGAGCTTCTGGGTTTGGGAAGTCTAAGGTG 1585
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 ATTCAGACACTACGAGTGATCACAGGATGTGGAGCTTCTGGGTTTGGAAAGTCTAAGGTG 1439
Query 1586 AAACAATCAGT 1596
|||||||||||
Sbjct 1440 AAACAATCAGT 1450
> Ahg951661 jgi|Araly1|951661|scaffold_101000002.1
Length=328
Score = 477 bits (258), Expect = 1e-133
Identities = 303/325 (93%), Gaps = 1/325 (0%)
Strand=Plus/Plus
Query 147 TCTATAATTGTACGATAATGAAGCAGAAGAACCAGCATAAGAAGAAGAAGAAGCGATCCT 206
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 TCTATAATCGTGCGATAATGAAGCAGAAGGGCCAGCATAAGAAGAAGAAGAAGCGATCCT 63
Query 207 GCGCCGCGAAACCTTCCGGTGATGGAACGACGTCGGACGGGAACAAAAAAGATGTGGAGG 266
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 GCGCCGCGAAATCTTCCGGTGATGGAACGGCGTCGGACGGGAACAAAAAAGATGTGGAGG 123
Query 267 AAGAGAGGAAGGACGGTGAAGGAAAGAGGGAGATAGAAAACGTTGGAAAAAATTTTATCG 326
| |||||||| ||||||||||| | || |||| ||||||| |||| |||||| ||||||
Sbjct 124 AGGAGAGGAAAGACGGTGAAGGTACGAAGGAGTTAGAAAAAGTTGAAAAAAAAATTATCG 183
Query 327 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAGG 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAAG 243
Query 387 AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTATCGGATCTGGTG-GAAAGCGGT 445
|||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||
Sbjct 244 AAGCAGGCGGAGATCTGAACAAAGCCGCAGAGATTTTGTCGGATCTGGTGCGCAAGCGGC 303
Query 446 GATGATCCGTCGACGAGTTCGGTGG 470
|||||||||||||||||||||||||
Sbjct 304 GATGATCCGTCGACGAGTTCGGTGG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75075872895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5