BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58730.1
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495998 jgi|Araly1|495998|fgenesh2_kg.8__1814__AT5G58730.1 1945 0.0
Ahg497572 jgi|Araly1|497572|fgenesh2_kg.1010__1__AT5G58730.1 784 0.0
> Ahg495998 jgi|Araly1|495998|fgenesh2_kg.8__1814__AT5G58730.1
Length=1391
Score = 1945 bits (1053), Expect = 0.0
Identities = 1254/1347 (93%), Gaps = 30/1347 (2%)
Strand=Plus/Plus
Query 1 ACGTTACGTATTAGCTTATAGCC---ATTAGTTTTGtctcttcttcttcttctcgttggt 57
||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||
Sbjct 1 ACGTTACGTATTAGCTTATAGCCATTATTAGTTTTGTCTCTTCTAC-TAGT-TCGTTGGT 58
Query 58 cggcttcttcgtcttactaattccatgattcttcttcttccttctgcttcactttctCGA 117
|| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 59 CGTCTTCTTCGTCTTAGTAATTCCATGA---TTCTTCTTCCTTCTGCTTCACCTTCCCGA 115
Query 118 TGATCCTCTGCACCAGCCGCGATCATGACGTTGAATCCTCCTCCGTCGCAGCAAACGTCT 177
||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 116 TGACCCTCTGCACAAGCCGCGATCATGACGCTAAATCCTCCTCCGTCGCAGCAAACGCCT 175
Query 178 CACTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGAAATTATTGCCACGAC 237
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 176 CAGTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGGAATTACTGCCACGAC 235
Query 238 GTTTTAATCCAAAACGGATCCGTCGTAGCTGAAACTCTCGGCGGCGCCGCCTCTTTCATA 297
||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 236 GTTCTGATCCAAAACGGATCCGTCGTAGCTGAAACACTCGGCGGCGCCGCCTCTTTCATC 295
Query 298 TCTAATGTCTTAGATTCTTCCTCTGTCTCCTGCGATTTGGTCTCCAAAGTAGGACACGAC 357
||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 296 TCTAATGTCCTAGATTCTTCCTCTGTATCCTGCGAATTGGTCTCCAAAGTCGGACACGAC 355
Query 358 TTCAGATACGAGGTCACCCACTCTCCGATCGTGGCTCCGGAGAAGGAAACAACAGTTTTC 417
|||||||||||||| | |||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 356 TTCAGATACGAGGTTATCCACTCTCCGATCGTGGCTCCGGACAAAGAAACCACAATTTTC 415
Query 418 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCATGCTGATCGGGTGTTGAAAAGA 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 416 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCACGCTGATCGGGTGTTGAAACGG 475
Query 478 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTT-GATTTCGG 536
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 476 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAG-TTTCGATTTCGG 534
Query 537 AATGGCCGTTGGAGTCGGCGGCGAGATTTTACCGGAGACGCTTGAGAAAATGGTGGAGAT 596
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GATGGCTGTTGGAGTCGGTGGCGAGATTTTACCGGAGACGCTTGAGAAAATGGTGGAGAT 594
Query 597 CTGTGACGTTGTTGCTGTGGATATTCAAGCTTTGATTAGGGTTTTTGATCCTGTTGACGG 656
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 595 CTGCGACGTTGTTGCTGTGGATATTCAAGCTCTGATTAGGGTTTTTGATCCCGTTGATGG 654
Query 657 AGCTGTGAAGCTTGTTGATTTGAAAGAAAGTGGATTTTATCACATCTTGCATCGAATTGG 716
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 AGCTGTGAAGCTTGTTGATTTGAAAGAAAGTGGATTTTTTCACATCTTGCATCGAATTGG 714
Query 717 ATTCTTGAAAGCTTCGTCAGACGAAGCTCTTTTCATGGATGTTGAACAAATGAAGCACTT 776
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 ATTCTTGAAAGCTTCATCAGACGAAGCTCTTTTCATGGATGTTGAACAAATGAAGCAATT 774
Query 777 GTGTTGTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAGGATTTATCATAAGGATGATGA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTGTTGTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAGGATTTATCATAAGGATGATGA 834
Query 837 AATGACGGTTCCTCCGTTCTTGGCGAAGCAGGTGGATCCTACCGGTGCCGGAGACAGCTT 896
| ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 835 AGCGACGGTTACTCCGTTCTTGGCGAAGCAGGTGGATCCTACCGGCGCCGGAGATAGCTT 894
Query 897 TCTCGGAGGTTTGATTGTTGGGCTTGTTGAAGGTTTGACTGTTCCTGATGCTGCATTGTT 956
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 TCTCGGAGGTTTGGTTGTTGGGCTTGTAGAAGGTTTGACTGTTCCTGATGCTGCATTGTT 954
Query 957 AGGGAACCTCTTTGGTTCCATCACTGTAGAGCATATTGGTCAGCCAAAGTTCGATTTGAT 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 955 AGGGAACCTCTTTGGTTCCATCACTGTAGAGCATATTGGTCAGCCAAAATTCGATTTGAT 1014
Query 1017 GATGCTTCAGAAAGTCAAGGATGAGGTACAGAGAAGGAAGAAGCAGTGTAACATATCTAG 1076
||||||||||| |||| ||||||||||||||| |||||||||||| |||||| | |||||
Sbjct 1015 GATGCTTCAGAGAGTCCAGGATGAGGTACAGAAAAGGAAGAAGCAATGTAACCTCTCTAG 1074
Query 1077 CAGCCATAACAACGATCACAACGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATG 1136
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAGCCATAAAAATGATCACAATGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATG 1134
Query 1137 CGTAGACTCTCAACTTCAACCAAAGTTATTGGTCAATGGTCACTC-T-TG-----TGA-T 1188
||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
Sbjct 1135 CGTAGACTCTCAACTTCAACCAAAGTTATTGGTCAATGGTCACTCCTGTGACAGGTGAAT 1194
Query 1189 GATCGGTCCCTGTGAATACGAATCTTGAATCACCttttttttACTAACAAAGCTCTTCTG 1248
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1195 GATCGGTCCCGGTGAATACGAATCTTGAATCAC-T-------ACTAACAAAGCTCTTCTG 1246
Query 1249 AGTTGTGTAAGCTTGCTTCAACACGTTGATGAATTTTGGAAATTTTAATGTATAAAACGC 1308
|||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1247 AGTTGTGTAAGCTT-C--CA-CACGTTGATGAATTTTGGAAATTTTAGTGTATAAAACGC 1302
Query 1309 GTTGACCAGCGTCTTCAAACGCTCTTT 1335
| |||||| ||||||||||||||||||
Sbjct 1303 GATGACCATCGTCTTCAAACGCTCTTT 1329
> Ahg497572 jgi|Araly1|497572|fgenesh2_kg.1010__1__AT5G58730.1
Length=968
Score = 784 bits (424), Expect = 0.0
Identities = 514/557 (92%), Gaps = 8/557 (1%)
Strand=Plus/Plus
Query 1 ACGTTACGTATTAGCTTATAGCC---ATTAGTTTTGtctcttcttcttcttctcgttggt 57
||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||
Sbjct 1 ACGTTACGTATTAGCTTATAGCCATTATTAGTTTTGTCTCTTCTAC-TAGT-TCGTTGGT 58
Query 58 cggcttcttcgtcttactaattccatgattcttcttcttccttctgcttcactttctCGA 117
|| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 59 CGTCTTCTTCGTCTTAGTAATTCCATGA---TTCTTCTTCCTTCTGCTTCACCTTCCCGA 115
Query 118 TGATCCTCTGCACCAGCCGCGATCATGACGTTGAATCCTCCTCCGTCGCAGCAAACGTCT 177
||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 116 TGACCCTCTGCACAAGCCGCGATCATGACGCTAAATCCTCCTCCGTCGCAGCAAACGCCT 175
Query 178 CACTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGAAATTATTGCCACGAC 237
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 176 CAGTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGGAATTACTGCCACGAC 235
Query 238 GTTTTAATCCAAAACGGATCCGTCGTAGCTGAAACTCTCGGCGGCGCCGCCTCTTTCATA 297
||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 236 GTTCTGATCCAAAACGGATCCGTCGTAGCTGAAACACTCGGCGGCGCCGCCTCTTTCATC 295
Query 298 TCTAATGTCTTAGATTCTTCCTCTGTCTCCTGCGATTTGGTCTCCAAAGTAGGACACGAC 357
||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 296 TCTAATGTCCTAGATTCTTCCTCTGTATCCTGCGAATTGGTCTCCAAAGTCGGACACGAC 355
Query 358 TTCAGATACGAGGTCACCCACTCTCCGATCGTGGCTCCGGAGAAGGAAACAACAGTTTTC 417
|||||||||||||| | |||||||||||||||||||||||| || ||||| ||| |||||
Sbjct 356 TTCAGATACGAGGTTATCCACTCTCCGATCGTGGCTCCGGACAAAGAAACCACAATTTTC 415
Query 418 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCATGCTGATCGGGTGTTGAAAAGA 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 416 GAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCACGCTGATCGGGTGTTGAAACGG 475
Query 478 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTTGATTTCGGA 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 GTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTCGATTTCGGG 535
Query 538 ATGGCCGTTGGAGTCGG 554
||||| |||||||||||
Sbjct 536 ATGGCTGTTGGAGTCGG 552
Score = 392 bits (212), Expect = 3e-108
Identities = 284/315 (90%), Gaps = 20/315 (6%)
Strand=Plus/Plus
Query 1029 AGTCAAGGATGAGGTACAGAGAAGGAAGAAGCAGTGTAACATATCTAGCAGCCATAACAA 1088
|||||||||||||||||||| |||||||||||| |||||| | |||||||||||||| ||
Sbjct 604 AGTCAAGGATGAGGTACAGAAAAGGAAGAAGCAATGTAACCTCTCTAGCAGCCATAAAAA 663
Query 1089 CGATCACAACGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATGCGTAGACTCTCA 1148
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TGATCACAATGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATGCGTAGACTCTCA 723
Query 1149 ACTTCAACCAAAGTTATTGGTCAATGGTCACTC-T-TG-----TGA-TGATCGGTCCCTG 1200
||||||||||||||||||||||||||||||||| | || ||| ||||||||||| |
Sbjct 724 ACTTCAACCAAAGTTATTGGTCAATGGTCACTCCTGTGACAGGTGAATGATCGGTCCCGG 783
Query 1201 TGAATACGAATCTTGAATCACCttttttttACTAACAAAGCTCTTCTGAGTTGTGTAAGC 1260
||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 784 TGAATACGAATCTTGAATCAC-T-------ACTAACAAAGCTCTTCTGAGTTGTGTAAGC 835
Query 1261 TTGCTTCAACACGTTGATGAATTTTGGAAATTTTAATGTATAAAACGCGTTGACCAGCGT 1320
|| | || |||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 836 TT-C--CA-CACGTTGATGAATTTTGGAAATTTTAGTGTATAAAACGCGATGACCATCGT 891
Query 1321 CTTCAAACGCTCTTT 1335
|||||||||||||||
Sbjct 892 CTTCAAACGCTCTTT 906
Score = 56.5 bits (30), Expect = 5e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 782 GTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAG 815
|||||||||||||||||||||||||||||| |||
Sbjct 552 GTGTGGTGGTGACTAATGGTGAAAAAGGGT-TAG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5