BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58740.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495999 jgi|Araly1|495999|fgenesh2_kg.8__1815__AT5G58740.1 970 0.0
> Ahg495999 jgi|Araly1|495999|fgenesh2_kg.8__1815__AT5G58740.1
Length=656
Score = 970 bits (525), Expect = 0.0
Identities = 624/670 (93%), Gaps = 14/670 (2%)
Strand=Plus/Plus
Query 33 AACTACTATCAACGGTGATCGATTTCGCCGGGAACGGAGAAGAAAACCCTAGATATGGCG 92
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTACAATCAACGGTGATCGATTTCGCCGGGAACGGAGAAGAAAACCCTAGATATGGCG 60
Query 93 GAGAAGCTTGCGCCAGAGAAGAGACACGATTTCATTCACAATGGTCAAAAGGTATTTGAG 152
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||
Sbjct 61 GAGAAGCTTGCGCCAGAGAAGCGACATGATTTCATTCACAACGGTCAAAAGGTGTTTGAT 120
Query 153 TGGGATCAAACCCTGGAAGAAGTGAACATGTACATAACTTTGCCGCCAAATGTTCATCCA 212
|||||||||||| | ||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 121 TGGGATCAAACCTTAGAAGAAGTGAACATGTACATAACTTTGCCTCCCAATGTTCCTCCA 180
Query 213 AAGTCATTCCACTGCAAAATCCAGTCGAAACATATCGAAGTTGGCATCAAAGGCAACCCT 272
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGCTTTCCACTGCAAAATCCAGTCGAAACATATCGAAGTTGGCATCAAAGGCAACCCT 240
Query 273 CCCTATCTCAATCACGATCTTAGTGCTCCTGTGAAGACTGATTGCTCGTTCTGGACTCTA 332
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CCTTATCTCAATCATGATCTTAGTGCTCCTGTGAAGACAGATTGCTCGTTCTGGACTCTA 300
Query 333 GAGGATGATATAATGCACATTACCCTGCAGAAGAGGGAGAAAGGGCAAACATGGGCATCA 392
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GAGGATGATATAATGCACATTACCCTGCAGAAGAGGGAGAAAGGGCAGACATGGGCATCG 360
Query 393 CCGATTCTGGGACAGGGTCAGTTAGATCCTTACGCCACTGATCTTGAGCAGAAGCGGCTC 452
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CCGATTCTGGGACAGGGTCAGTTGGATCCTTACGCCACTGATCTTGAGCAGAAGCGGCTC 420
Query 453 ATGCTCCAGAGGTTTCAAGAAGAGAACCCGGGATTCGACTTCTCGCAAGCTCAGTTCTCG 512
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 421 ATGCTCCAGAGGTTTCAAGAAGAGAACCCAGGATTCGACTTTTCGCAAGCTCAGTTCACG 480
Query 513 GGTAATTGTCCAGATCCAAGGAGCTTCATGGGCGGTATTCGTTCTGACTAAATAAATAAT 572
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 481 GGTAATTGTCCAGATCCAAGGAGCTTCATGGGGGGTATTCGTTCTGACTAAATA--TAGT 538
Query 573 AGTCCCACTCTTGTTGCTATAATAGTATGTCCATTATAACAAACTCAAAAGTCACCATGA 632
||||||| ||||||||||| ||||||||||| ||||| | |||||||||||| | |
Sbjct 539 CCTCCCACTATTGTTGCTATAGTAGTATGTCCAATATAA-A--CTCAAAAGTCAC--T-A 592
Query 633 CTTAAACAAAATGTCTCATGTCTCATAAATAAACCCCCTGACTCTCTGTTTCTATAACTC 692
| ||| | ||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 593 C--AAA-A---TGTCTCATGGCTCATAAATAAACGCCCTGAGTCTCTGTTTCTATAACTC 646
Query 693 GTAATGGCAA 702
||||||||||
Sbjct 647 GTAATGGCAA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5