BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58750.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496000 jgi|Araly1|496000|fgenesh2_kg.8__1816__AT5G58750.1 1860 0.0
> Ahg496000 jgi|Araly1|496000|fgenesh2_kg.8__1816__AT5G58750.1
Length=1299
Score = 1860 bits (1007), Expect = 0.0
Identities = 1192/1280 (93%), Gaps = 18/1280 (1%)
Strand=Plus/Plus
Query 69 ATCAAAGTCCATAACTCACTAATAATCACAATGGGGTCTGAAAATGGCAGCTTGATGAGA 128
||||||||||||||||| || ||| ||| ||||||||||||||||||||||||| || ||
Sbjct 25 ATCAAAGTCCATAACTCTCTCATAGTCAAAATGGGGTCTGAAAATGGCAGCTTGGTGGGA 84
Query 129 AGAAACGAAGTAGACGAGAATGTAGCGTTAATCTTTGGCGTCACCGGGCTTGTGGGTCGA 188
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 85 AGAAACGAAGTAGACGAGAATGTCGCGTTGATCTTTGGCGTCACCGGACTTGTGGGTCGA 144
Query 189 GAGATTGTTAAGACGCTATTAATGTCTAAACCAGGATGGAGAATCTACGGCGTAGCGCGT 248
||||||||||||| |||||||| ||| |||||| ||||||||||||| |||||||||||
Sbjct 145 GAGATTGTTAAGAGGCTATTAACGTCAAAACCAAGATGGAGAATCTATGGCGTAGCGCGA 204
Query 249 AACCCGGAGATCAATTCCATGACGAAGATGTACAACTTCATCTCCTGCGATCTGCTTAAC 308
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 205 AACCCGGAGATCAATTCCATGACGAAGATGTACAACTTCATCTCATGTGATCTGCTCAAC 264
Query 309 GCATCTGAGACTAAACAGAGGTTGTCTCCATTACAAGACATCGTGAGTCACGTGTTTTGG 368
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 265 GCATCTGAGACTAAACAGAGGTTGTTTCCATTACAAGACATCGTGAGTCACGTGTTTTGG 324
Query 369 GTCACGTGGTCTGGTGAGTTTCCATTGGATACCGACGAATGTTGCGTACAGAACAAGACG 428
||||||||||||||||||| |||| ||||||||||||| || ||||| ||||||||||||
Sbjct 325 GTCACGTGGTCTGGTGAGTATCCACTGGATACCGACGAGTGCTGCGTCCAGAACAAGACG 384
Query 429 ATGCTGATGAACGCTTTGGACGCGATTCTCCCAAACGCTAAGAGGTTAAAGCATTTCTCG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATGCTGATGAACGCTTTGGACGCGATTCTCCCAAACGCTAAGAGGTTAAAGCATTTCTCG 444
Query 489 CTTCAAACGGGGATGAAGCATTATGTGTCTTTGGTGGAAGAGACAATGGCTCGTGGAGAA 548
||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 445 CTTCAGACGGGGATGAAGCATTACGTGTCTTTGGTGGAAGAGACTCTGTTTCGTGGAGAA 504
Query 549 GGTTCGAGTTTGTATTATTACAGCGAGGAGTGTCCAAGAAAGAGCTCTGGGAAGAATTTC 608
||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 505 GGTTCCAGTTTGTGTTATTACACCGAGGAGTGTCCAAGAAAGAGCTCTGGGATGAATTTC 564
Query 609 TACTATGTTTTGGAGGACTTGCTGAAGGAGAAGATCACTCGTAGTTCCGTTGTTTGGTCG 668
||||||||| ||||||| ||||| ||||||||||| ||| |||||||||| |||||||||
Sbjct 565 TACTATGTTCTGGAGGATTTGCTAAAGGAGAAGATTACTGGTAGTTCCGTGGTTTGGTCG 624
Query 669 GTTCAAAGACCTGGTTTGCTAATGGGAAGCTCTTCAAGAACTCTGTACAACTTCATGGGA 728
|||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 625 GTTCAACGACCCGGTTTGTTAATGGGAAGCTCAACAAGAACTCTGTACAACTTCATGGGA 684
Query 729 AGTCTTTGTGTTTATGGAGCGATGTGTAAGTATTTGAATCTTCCTTTTGTGTTTGGAGGA 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AGTCTTTGTGTTTATGGAGCGATGTGTAAGTATTTGAATCTTCCTTTTGTGTTTGGAGGG 744
Query 789 ACAAGAGAATGTTGGGAAGAGAGTTACATAGATGGCTCTGATTCGAATTTAGTCGCGGAG 848
||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct 745 ACAAGAGAATGTTGGGAAGAGAGTTACATCGACGGCTCGGATTCAAATTTAGTCGCGGAA 804
Query 849 CAGCATATATTCGCTGCAACAAGTGGGAAAGTACGCGAGAAAGGGGAAGCTTTTAACGCC 908
|||||||| |||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 805 CAGCATATTTTCGCTGCAAGTAGCGGGAAAGTACGCGAGAAAGGTGAAGCCTTTAACGCC 864
Query 909 ATTAATGGAGTAGGGTTTACTTGGAAGGAGATTTGGCCGGAAATAGGGAAGAAACTTGGT 968
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATTAATGGAGTAGGTTTTACTTGGAAGGAGATTTGGCCGGAAATAGGGAAGAAACTTGGA 924
Query 969 GTACAAGTTAACGAAACAACCATGTTTGATGAAGGTTTCTGGTTTGGGAGAGAGATGGTT 1028
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 925 GTACAAGTTAACGAAACAACCATGTTTGATGAAGGTTTCTGGTTTGGTAGAGAGATGGCT 984
Query 1029 GAGAGAAAACATGTGTGGGATGAGATTGTTGTGAAGGAGAAGCTTGTT-AGGACAGAGAT 1087
||||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||
Sbjct 985 GAGAGAAAACATGTGTGGGATGAGATTGTGGTGAAGGAGAAGCTTGTTCAG-ACAAAGAT 1043
Query 1088 TGAGGATTTGGCGAATTGGTATTTCTTGGATGCTCTGTTTAGATGTCCGTTTAAGCTTCT 1147
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGAGGATTTGGCGAATTGGTTTTTCTTGGATGCTCTGTTTAGATGTCCGTTTAAGCTTCT 1103
Query 1148 TGGGAAAAGAGAAAAAGTAGATAGGTTTGGGTTTAAGAGGAAATATAGAACCCTAGATTC 1207
|||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGGGAAGAGGGAGAAAGTAGATAAGTTTGGGTTTAAGAGGAAATATAGAACCCTAGATTC 1163
Query 1208 GGTTTTGTATTGGATTGATGTGATGAGAGATGAAAAACTCATTCCTTTGTAACACATGT- 1266
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1164 GATTTTGTATTGGATTGATGTGATGAGAGATGAAAAACTCATTCCTTTGTAACATATGTA 1223
Query 1267 TGT-A--CATTAGCAA--T-G---T--AGATCACGGTATATATGTACTTGATCAATAATC 1315
||| | ||||||||| | | | |||||||||||| |||||||||||||||||
Sbjct 1224 TGTTATACATTAGCAAAATAGCAATGTAGATCACGGTAT----GTACTTGATCAATAATC 1279
Query 1316 CTCATGTAAGTTTTGTTTGT 1335
||||||||||||||||||||
Sbjct 1280 CTCATGTAAGTTTTGTTTGT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5