BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58760.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496001 jgi|Araly1|496001|fgenesh2_kg.8__1817__AT5G58760.1 3014 0.0
> Ahg496001 jgi|Araly1|496001|fgenesh2_kg.8__1817__AT5G58760.1
Length=1999
Score = 3014 bits (1632), Expect = 0.0
Identities = 1888/2009 (94%), Gaps = 28/2009 (1%)
Strand=Plus/Plus
Query 17 ATCAAACCCAAAAAGAAACAAAACTGTTTGATTCGTACTCTCTTCC-TTTTGTCGGGTCG 75
||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 1 ATCGAACCCAAAAAGAAACAAAACAGTTTGATTCGTATTCTCTTCCTTTTTGTCGGGTCG 60
Query 76 TGAGATTTTTACCGAAAATGAGTTCAACGAGGAGCAGA-AGAAAAAGGGACCCAGAAATC 134
||||| |||||||||||||| ||| |||||||| || | ||||||| |||||||||||||
Sbjct 61 TGAGAATTTTACCGAAAATGGGTTTAACGAGGAACA-ATAGAAAAACGGACCCAGAAATC 119
Query 135 GTCATCGCTAGAGATACAGATTCCGAGTTAAGTTCGTCagaagaagaagaagaagaggaa 194
|||||||||||||||||||||||||||||||||||||| | | ||||| | | |||
Sbjct 120 ATCATCGCTAGAGATACAGATTCCGAGTTAAGTTCGTCATCATCATCAGAAG-A-A-GAA 176
Query 195 gaTAATTACCCTTTCTCGGAGTCGGAGGAGGAAGATGAAGCGGTTAAAAATGGAGGGAAA 254
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATAATTACCCTTTGTCGGAGTCGGAGGAGGAAGATGAAGCGGTTAAAAATGGAGGGAAA 236
Query 255 ATTGAATTGGAGAAGAATAAAGCCAAAGGGAAAGCACCCATTACCGTTAAGCTTATTAAG 314
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTGAATTGGAGAAGAATAAAGCGAAAGGGAAAGCACCCATTACCGTTAAGCTTATTAAG 296
Query 315 AAAGTTTGCAAAGTTTGTAAACAGCCTGGCCATGAAGCTGGATTTAAAGGAGCAACGTAT 374
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 297 AAAGTTTGCAAAGTTTGTAAACAGCCTGGTCATGAAGCTGGATTCAAAGGAGCAACTTAT 356
Query 375 ATCGATTGTCCTATGAAGCCTTGCTTCTTGTGTAAAATGCCTGGCCACACCACAATGTCC 434
||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct 357 ATCGATTGTCCTATGAAACCTTGCTTCTTATGCAAAATGCCTGGCCACACCACGATGTCC 416
Query 435 TGTCCTCATAGAGTGGTTACTGACCACGGAATACTCCCAACTTCTCATAGGAATACAAAG 494
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 417 TGTCCTCATAGAGTGGTTACTGACCATGGAATACTCCCAACTTCTCATAGGAACACAAAG 476
Query 495 AACCCTATTGACTTTGTGTTCAAGCGCCAACTCCAACCGAGAATTCCTCCTATTAAACCA 554
|| ||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 477 AATCCTATTGACTTTGTGTTCAAGCGCCAACTCCAACCAAGAATTCCCCCAATCAAACCA 536
Query 555 AAATATGTGATCCCGGATCAAGTTCATTGTGCAGTTATTAGATACCACAGCAGACGTGTT 614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 AAATATGTGATCCCGGATCAAGTTCATTGTGCAGTTATTCGATACCACAGCAGACGTGTT 596
Query 615 ACATGTTTGGAGTTCCATCCAACAAAGAACAACATTCTTCTCTCTGGAGATAAGAAAGGG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACATGTTTGGAGTTCCATCCAACAAAGAACAACATTCTTCTCTCTGGAGATAAGAAAGGG 656
Query 675 CAAATTGGAGTCTGGGATTTTGGAAAAGTGTATGAGAAGAATGTGTATGGAAACATACAT 734
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 657 CAAATCGGAGTCTGGGATTTTGCAAAAGTGTATGAGAAGAATGTGTATGGAAACATACAC 716
Query 735 TCTGTTCAAGTTAATAATATGCGGTTTAGTCCCACAAATGATGACATGGTTTATTCTGCA 794
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 TCTATTCAAGTTAATAATATGCGGTTTAGTCCCACAAATGATGATATGGTTTATTCTGCA 776
Query 795 TCCTCTGATGGAACAATTGGTTATACTGACCTGGAAACTGGAACTTCATCAACTTTGCTG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCCTCTGATGGAACAATTGGTTATACTGACCTGGAAACTGGAACTTCATCAACTTTGCTG 836
Query 855 AATCTCAACCCTGATGGATGGCAGGGCGCAAACAGTTGGAAAATGCTGTACGGTATGGAT 914
||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 837 AATATCAACCCCGATGGATGGCAGGGCCCAAACAATTGGAAAATGCTGTACGGTATGGAT 896
Query 915 ATAAACTCGGAGAAAGGTGTAGTGCTTGCTGCTGATAATTTTGGGTTTCTTCACATGATC 974
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 ATAAACTCGGAGAAAGGTGTAGTGCTAGCTGCTGATAATTTTGGGTTTCTTCACATGATC 956
Query 975 GATCATCGTACCAATAACAGTACGGGTGAGCCTATTCTGATACACAAGCAAGGAAGCAAA 1034
|| ||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||
Sbjct 957 GACCATCGTACCAATAACGGAACAGGTGAGCCAATTTTGATACACAAGCAAGGAAGCAAA 1016
Query 1035 GTTTGT-GGCCTCGACTGCAACCCTGTCCAGCCTGAGCTTCTTCTCAGTTGTGGGAACGA 1093
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 GTT-GTTGGCCTCGACTGCAACCCAGTCCAGCCTGAGCTTCTTCTCAGTTGTGGGAACGA 1075
Query 1094 TCATTTTGCGCGAATCTGGGATATGCGTAAACTACAACCTAAAGCTTCTCTTCATGATCT 1153
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 TCATTTTGCACGAATATGGGATATGCGTAAACTACAACCTAAAGCTTCTCTTAATGATCT 1135
Query 1154 TGCACACAAACGAGTAGTCAACTCTGCTTACTTCTCTCCATCATCAGGCACGAAAATCCT 1213
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 TGCACACAAACGAGTAGTCAACTCTGCTTATTTCTCTCCATCATCAGGCACGAAAATCCT 1195
Query 1214 CACGACGTGTCAGGACAACCGTATTCGAATATGGGACTCTATCTTCGGGAACTTAGATTT 1273
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1196 AACGACCTGTCAGGACAACCGTATTCGAATATGGGACTCTATCTTCGGGAACTTGGATTT 1255
Query 1274 GCCAAGCCGAGAGATTGTTCATAGTAATGATTTCAATCGGCATTTGACACCATTCAAAGC 1333
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1256 GCCAAGCCGAGAGATTGTTCATAGCAATGATTTCAATCGGCATTTGACGCCATTCAAAGC 1315
Query 1334 TGAATGGGACCCTAAGGATACCTCGGAGTCACTCATCGTGATTGGTCGTTACATCAGTGA 1393
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1316 TGAATGGGATCCTAAGGATACCTCGGAGTCACTCATTGTGGTTGGTCGTTACATCAGTGA 1375
Query 1394 AAACTACAACGGAACTGCTCTTCACCCAATAGATTTCATTGATGCAAGCAATGGACAATT 1453
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAACTACAATGGAACTGCTCTTCACCCAATAGATTTCATTGATGCAAGCAATGGACAATT 1435
Query 1454 GGTTGCAGAGGTTATGGATCCAAACATCACAACTATTACTCCAGTCAACAAGTTGCATCC 1513
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1436 GGTTGCAGAGGTTATGGATCCTAACATCACAACTATTACGCCAGTCAACAAGTTGCATCC 1495
Query 1514 TCGCGATGATGTTTTAGCTTCAGGAAGTTCAAGGTCGCTGTTCATTTGGAGGCCACAGGA 1573
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1496 GCGCGATGATGTTTTAGCTTCAGGAAGTTCAAGGTCTCTGTTTATTTGGCGGCCACAGGA 1555
Query 1574 TAATACAGAGATGGTTGAGGAGAAGAAGGATAAGAAGATTATCATATGTTATGGTGACAG 1633
||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||
Sbjct 1556 TAAAACAGAGATGGTTGAGGAGAAGAAGGATAAAAAGATTATCGTATGTTCTGGCGACAG 1615
Query 1634 CAAGAAGAAAGGAAAGAAGCAAAAGCGTGGCAGCGATGATGAAGACGATGAAGATGACAT 1693
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1616 CAAGAAGAAAGGAAAGAAGCAAAAGCGTGGCAGCGATGATGAAGACGACGAAGATGACAT 1675
Query 1694 ATTTAGCTCTaaaggcaaaaacataaaagtcaataagtatcaagcaaaaacaaccaag-- 1751
||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct 1676 GTTTAGCTCTAAAGGCAAAAACATTAAAGTCAACAAGTCTCAAGCAAAAACAACCAAGTC 1735
Query 1752 -a-----a-gacaaaaacTTAATATGAGTGAAGAAGGTCGTTATGTATAACTAACTT--A 1802
| | ||||||||||||| || ||| |||||||| |||||||||||||||||| |
Sbjct 1736 TACTCGGAAGACAAAAACTTAAGATTAGTAAAGAAGGTTGTTATGTATAACTAACTTTTA 1795
Query 1803 CTCTGTTTTTGTAGGTTTTCTTGTACAGAGTCTGTTTTAGTAGCATC--CCCTGttttgc 1860
|||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1796 CTCTGTATTTGTAGGTTTTCTAGTACAGAGTCTGTTTTAGTAGCATATACCCTGTTTTGC 1855
Query 1861 ctttggc-ggcaattttgcttcttttttcttttgggggcgcatgatcggcttttgTATGG 1919
||||||| ||||||||||||| || ||| |||||||||| ||||||||| |||||||||
Sbjct 1856 CTTTGGCTGGCAATTTTGCTT-TTCTTT-TTTTGGGGGC--ATGATCGGCATTTGTATGG 1911
Query 1920 CATTTTCTTGAAATCCTTTTTGGTG-ATTCTTAAGTATGAATTGTAGTAAGTATGTGGAA 1978
|||||||||||| |||||||||||| || || |||||||||||| |||||| ||||||||
Sbjct 1912 CATTTTCTTGAATTCCTTTTTGGTGTAT-CTAAAGTATGAATTGCAGTAAGAATGTGGAA 1970
Query 1979 TGGATCAATCTTGAATCTTCTCTTCAGTT 2007
| ||||||||| |||||||||||||||||
Sbjct 1971 TAGATCAATCTCGAATCTTCTCTTCAGTT 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5