BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58782.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1 1334 0.0
Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1 632 1e-180
> Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1
Length=915
Score = 1334 bits (722), Expect = 0.0
Identities = 847/907 (93%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 22 tcttcacactctctacaatgttgtctatgctctggttccttctatctcttctctctcttc 81
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||
Sbjct 1 TCTTCACACTCTCTACAATGTTGTCTCTGCTCTGTTTCCTTCTGTCTCTTCTCTTTCTTC 60
Query 82 ttctACTTCCTTGTCTCCGACCTTGCTTTCCTGCTAAAGGATCTCTGAAAAACAAAAAGA 141
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 61 TTCTACTTCCTTGTCTCCGACCTTGCTTTTCTGCTAAAGGATCTCTGAAAGATAAAAAGA 120
Query 142 AGATTGACAAGGGAACTTATGTGGTCGGAGAGGAGGAGACACCTAAAGAGCTTCAG-AGA 200
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||
Sbjct 121 AGATTGACAAGGGAACTTATGTGGTCGGAGAGGAGGAGCCACCTAAAGGGCTTC-GAAGA 179
Query 201 GAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAACCGGAGATGGGCTAAACAG 260
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 180 GAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGAGATGGGCGAAACAG 239
Query 261 ACCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGGCTT-CTCGAGTTCGC 319
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 240 GCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG-TTAATAGAGTTCGC 298
Query 320 TGACCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACTGAGAA 379
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACTGAGAA 358
Query 380 TTGGGGAAGACACAAGATTGAAGTCAAATGCTTGATGTATTTGTTCCAACGTTACCTCAA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGGGGAAGACACAAGATTGAAGTCAAATGCTTGATGTATTTGTTCCAACGTTACCTCAA 418
Query 440 GTCAAAGATCCAATTTTTCCAGAGCAAGGAAATCCGAGTTTCTGTTATCGGGAATCTTGC 499
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCAAAGATCCAATTCTTCCAGAGCAAGGAAATCCGAGTTTCTGTTATCGGGAATCTTGC 478
Query 500 GAAGATCCCTGAGTCTCTCCTCCGAACAGTTCAC-GAGTTAGAGGAAGCTACAAAGAGTT 558
|||||| || || ||||||||| ||| | | ||| ||| ||||||| |||||||||||||
Sbjct 479 GAAGATTCCGGAATCTCTCCTCGGAATAAT-CACAGAGATAGAGGATGCTACAAAGAGTT 537
Query 559 ACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGATTCGACATCTTGGGTG 618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 ACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGATTCGACATCTTGCGTG 597
Query 619 CTTGCAAGAACATTGTGAAGAAATCAGAACAAGGTTTGATCCGAGAGGAAGACGTGGACG 678
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 598 CTTGCAAGAGCATTGTGAAGAAATCAGAACAAGGTTTGATCCGAGAGGAAGAAGTGGACG 657
Query 679 AGACGTTGTTCGAGAGAGAGCTTCAGACTCG-GTGTACCGAGTTCCCAAGTCCTGATCTC 737
|||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 658 AGACGTTGTTGGAGAGAGAGCTTCAGAC-CAAGTGTACAGAGTTCCCAAGTCCTGATCTC 716
Query 738 TTGATTAGGACTAGTGGGGAACAGAGGATTAGTAACTTCTTCTTGTGGCAGCTCGCTTAT 797
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 TTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTCGCTTAT 776
Query 798 ACCGAGTTTTTCTTTTCGCCTGTACTTTGGCCTGATTTCGATAAGCAGAAG-TTTATAGA 856
|||||| | ||||| || || || |||||||||||||| || ||| | ||| ||| ||||
Sbjct 777 ACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACAAGGATAAGCTTT-TAGA 835
Query 857 GGCCCTGGTTTCGTATCAGCGCAGGGATAGACGATTTGGCTCCCGGCTTTGATCCACATT 916
||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 836 CGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGGTTTGATCCACATT 895
Query 917 TGATCCT 923
|||||||
Sbjct 896 TGATCCT 902
> Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1
Length=928
Score = 632 bits (342), Expect = 1e-180
Identities = 617/748 (82%), Gaps = 26/748 (3%)
Strand=Plus/Plus
Query 189 GAGCTTCAGAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAACCGGAGA 248
||||| || |||||| |||||||||| ||||| ||| | ||| |||| ||||||||||||
Sbjct 190 GAGCTACAAAGAGAGTTGATGCCGAGGCACGTAGCATTCATATTGGATGGAAACCGGAGA 249
Query 249 TGGGCTAAACAGACCGGATTGTTGACGTC-ACAAGGCTACGAGGCTGGAGCTAAACGGCT 307
||||| |||| | |||||||| |||| | ||||||| ||||||| ||||||||||||||
Sbjct 250 TGGGCCAAACGGGCCGGATTGACGACG-CAACAAGGCCACGAGGCAGGAGCTAAACGGCT 308
Query 308 TCTCGAGTTCGCTGACCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTT 367
| | || |||| || ||||||||| | | ||||| |||| ||||||||||||| |||
Sbjct 309 TGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGGGATTCATACAGTCTCAGCTTTTGTTTT 368
Query 368 CTCCACTGAGAATTGGGGAAGACACAAGATTGAAG-TCA-AATGCTTGATGTATTTGTTC 425
|||||| ||||||||||||||| |||||||||||| | | || ||| |||| |||| ||
Sbjct 369 CTCCACAGAGAATTGGGGAAGAGACAAGATTGAAGTTGATAA--CTTAATGTCTTTGATC 426
Query 426 CAACGTTACCTCAAGTCAAAGATCCAATTTTTCCAGAGCA-AGGAAATCCGAGTTTCTGT 484
|||| |||| |||||| | |||||||| ||||| || | |||||| || ||||||||
Sbjct 427 CAACACTACCGCAAGTCCGACATCCAATTCTTCCATAG-ATCGGAAATTCGCGTTTCTGT 485
Query 485 TATCGGGAATCTTGCGAAGATCCCTGAGTC-TCTCCTCCGAACAGTTCACGAGTTAGAGG 543
||||||||||| | || ||| |||| | |||||||| || | | || ||| ||||||
Sbjct 486 TATCGGGAATCAAACAAATATCTCTGA-ACATCTCCTCCAAAAACTCCATGAGATAGAGG 544
Query 544 AAGCTAC-AAAGAGTTACAAGAAGAAGCATCTCATCTTGGCCATAGATTACAGCGGGAGA 602
||||||| |||| | |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 545 AAGCTACGAAAG-GCTACAAGAATAAGCATCTCATCGTGGCAATAGATTACAGCGGGAGA 603
Query 603 TTCGACATCTTGGGTGCTTGCAAGA-ACATTGTGAAGAAATCAGA-ACAAGGTTTGATCC 660
||||| ||| || |||||||||| | |||||||||||||||| | |||| |||||||
Sbjct 604 TTCGATATCATGCACGCTTGCAAGAGTC-TTGTGAAGAAATCAGAGA-AAGGGTTGATCC 661
Query 661 GAGAGGAAGACGTGGACGAGACGTTG-TTCGAGAGAGAGCT-TCAGACTCGGTGTACCGA 718
|||||||||| || |||||| | ||| || ||||| ||||| | ||| |||| ||
Sbjct 662 GAGAGGAAGATGTAGACGAGGCATTGATT-GAGAGGGAGCTAT-TGACGAATTGTAGTGA 719
Query 719 GTTCCCAAGTCCTGATCTCTTGATTAGGACTAGTGGGGAACAGAGGATTAGTAACTTCTT 778
||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 720 CTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTT 779
Query 779 CTTGTGGCAGCTCGCTTATACCGAGTTTTTCTTT-TCGCCTGTACTTT-GGCCTGATTTC 836
||||||||| || |||||||||||| | || ||| ||||| || |||| ||||||||||
Sbjct 780 CTTGTGGCAACTTGCTTATACCGAGCTCTT-TTTCTCGCCGGT-CTTTTGGCCTGATTTT 837
Query 837 GATAAGCAGAAGTTTATAGAGGCCCTGGTTTCGTATCAGCGCAGGGATAGACGATTTGGC 896
|||||| | ||| || ||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 838 GATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGC 897
Query 897 TCCCG-GCTTTGATCCACATTTGATCCT 923
| || | |||||||||||||| |||||
Sbjct 898 TGTCGTG-TTTGATCCACATTTCATCCT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5